Wall clock time and date at job start Tue Mar 31 2020 22:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47190 * 2 1 4 4 N 1.46496 * 109.47092 * 120.00837 * 2 1 3 5 5 C 1.36935 * 120.00141 * 274.99374 * 4 2 1 6 6 H 1.08005 * 119.99896 * 0.02562 * 5 4 2 7 7 C 1.38811 * 120.00299 * 179.97438 * 5 4 2 8 8 N 1.31619 * 119.99840 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99837 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47105 * 90.00426 * 9 7 5 11 11 H 1.48507 * 109.46669 * 210.00502 * 9 7 5 12 12 H 1.48498 * 109.47076 * 329.99914 * 9 7 5 13 13 C 1.53005 * 109.46567 * 240.00858 * 2 1 3 14 14 C 1.53039 * 109.46464 * 60.00029 * 13 2 1 15 15 C 1.53185 * 109.31343 * 181.38531 * 14 13 2 16 16 N 1.46924 * 108.77553 * 305.36439 * 15 14 13 17 17 C 1.34783 * 120.63219 * 233.58721 * 16 15 14 18 18 O 1.21283 * 119.99942 * 359.97438 * 17 16 15 19 19 C 1.50701 * 120.00084 * 179.97438 * 17 16 15 20 20 N 1.46504 * 109.46849 * 179.97438 * 19 17 16 21 21 C 1.46382 * 119.32630 * 90.00690 * 20 19 17 22 22 C 1.53234 * 109.15308 * 150.91555 * 21 20 19 23 23 C 1.53241 * 108.56338 * 55.48274 * 22 21 20 24 24 N 1.46386 * 109.15100 * 304.51407 * 23 22 21 25 25 C 1.34131 * 119.33136 * 269.98031 * 20 19 17 26 26 O 1.21588 * 118.70257 * 0.62187 * 25 20 19 27 27 C 1.46928 * 118.74134 * 53.86099 * 16 15 14 28 28 C 1.53046 * 109.45427 * 180.02562 * 13 2 1 29 29 H 1.09001 * 109.47000 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47060 * 299.99211 * 1 2 3 31 31 H 1.08999 * 109.47238 * 59.99493 * 1 2 3 32 32 H 0.97005 * 119.99924 * 95.00093 * 4 2 1 33 33 H 0.96999 * 119.99736 * 180.02562 * 8 7 5 34 34 H 1.09003 * 109.45732 * 300.02124 * 13 2 1 35 35 H 1.09001 * 109.49396 * 61.42963 * 14 13 2 36 36 H 1.09002 * 109.52127 * 301.35158 * 14 13 2 37 37 H 1.09002 * 109.58678 * 185.57956 * 15 14 13 38 38 H 1.08997 * 109.70749 * 65.22074 * 15 14 13 39 39 H 1.09004 * 109.46743 * 60.00656 * 19 17 16 40 40 H 1.08992 * 109.47307 * 299.99917 * 19 17 16 41 41 H 1.09001 * 109.52715 * 31.01228 * 21 20 19 42 42 H 1.08999 * 109.57415 * 270.84933 * 21 20 19 43 43 H 1.08997 * 109.62696 * 295.75503 * 22 21 20 44 44 H 1.09002 * 109.77305 * 175.28743 * 22 21 20 45 45 H 1.09004 * 109.52724 * 184.61977 * 23 22 21 46 46 H 1.09000 * 109.58485 * 64.45116 * 23 22 21 47 47 H 0.96998 * 119.33215 * 208.78279 * 24 23 22 48 48 H 1.08995 * 109.58359 * 65.92896 * 27 16 15 49 49 H 1.09001 * 109.59095 * 186.35336 * 27 16 15 50 50 H 1.08994 * 109.49888 * 298.56109 * 28 13 2 51 51 H 1.08997 * 109.49767 * 58.63386 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6908 1.1960 5 6 2.1493 -0.0078 2.3757 6 1 1.8921 1.0400 2.4244 7 6 2.6114 -0.6624 3.5091 8 7 2.9243 -1.9395 3.4499 9 14 2.7893 0.2692 5.1185 10 1 1.5213 0.1779 5.8860 11 1 3.8937 -0.3243 5.9144 12 1 3.0945 1.6944 4.8343 13 6 2.0399 -0.7211 -1.2494 14 6 1.5296 0.0007 -2.4987 15 6 2.0133 -0.7439 -3.7470 16 7 3.4750 -0.8768 -3.6817 17 6 4.2490 -0.4581 -4.7027 18 8 3.7399 0.0335 -5.6876 19 6 5.7470 -0.6008 -4.6204 20 7 6.3554 -0.0766 -5.8457 21 6 6.7341 1.3359 -5.9106 22 6 7.9214 1.4947 -6.8661 23 6 7.5390 0.8949 -8.2234 24 7 7.1167 -0.4938 -8.0329 25 6 6.5547 -0.9008 -6.8849 26 8 6.2119 -2.0629 -6.7827 27 6 4.0768 -1.4804 -2.4849 28 6 3.5704 -0.7215 -1.2488 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 2.2491 -1.6320 1.1523 33 1 3.2470 -2.3970 4.2420 34 1 1.6761 -1.7486 -1.2495 35 1 1.9136 1.0207 -2.5118 36 1 0.4399 0.0222 -2.4874 37 1 1.7371 -0.1806 -4.6384 38 1 1.5578 -1.7334 -3.7844 39 1 6.0060 -1.6537 -4.5082 40 1 6.1186 -0.0416 -3.7618 41 1 7.0172 1.6833 -4.9170 42 1 5.8916 1.9234 -6.2756 43 1 8.7875 0.9688 -6.4645 44 1 8.1587 2.5517 -6.9870 45 1 8.4002 0.9253 -8.8909 46 1 6.7204 1.4681 -8.6586 47 1 7.2422 -1.1316 -8.7529 48 1 3.7860 -2.5288 -2.4189 49 1 5.1625 -1.4032 -2.5432 50 1 3.9345 0.3055 -1.2742 51 1 3.9337 -1.2143 -0.3470 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753273815.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:03 Heat of formation + Delta-G solvation = -74.053629 kcal Electronic energy + Delta-G solvation = -30494.918442 eV Core-core repulsion = 26428.349207 eV Total energy + Delta-G solvation = -4066.569235 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.94287 -40.92594 -39.12311 -37.49614 -36.85902 -35.88412 -34.62358 -32.68683 -32.06849 -31.92140 -30.19929 -28.98597 -26.69672 -26.38402 -25.42619 -24.18996 -23.68381 -22.46014 -21.16992 -20.48833 -19.58934 -19.10966 -18.61996 -18.45010 -18.11797 -17.00114 -16.80705 -16.54741 -16.31927 -15.76135 -15.60896 -15.44673 -15.27956 -15.02321 -14.90447 -14.70066 -14.65518 -14.29925 -14.18590 -13.94622 -13.60419 -13.40830 -13.22873 -12.96975 -12.84074 -12.78021 -12.72355 -12.33366 -12.28500 -12.21579 -12.15907 -12.08940 -11.80650 -11.49564 -11.35396 -11.23529 -11.17419 -11.06109 -10.84220 -10.17356 -9.64962 -9.61416 -8.92161 -7.88366 -5.14413 1.49403 1.50197 1.50860 1.57146 1.58070 2.00743 2.21238 2.60048 2.87194 3.45384 3.49251 3.77941 3.79112 3.83408 3.91136 3.95775 4.02183 4.17514 4.25468 4.29127 4.32671 4.41614 4.44978 4.49402 4.58393 4.61734 4.67618 4.76099 4.80303 4.82070 4.83097 4.89341 4.96177 5.07902 5.09232 5.16396 5.20086 5.25137 5.30183 5.39599 5.50236 5.54618 5.58504 5.65486 5.71263 6.08055 6.34521 6.38336 6.75827 7.11711 7.41119 7.50152 8.19249 8.42398 9.34890 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018051 B = 0.002350 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.800412 B =11914.533322 C =12576.313969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.174 3.826 3 H 0.038 0.962 4 N -0.731 5.731 5 C -0.229 4.229 6 H 0.070 0.930 7 C -0.075 4.075 8 N -0.967 5.967 9 Si 0.963 3.037 10 H -0.293 1.293 11 H -0.297 1.297 12 H -0.271 1.271 13 C -0.081 4.081 14 C -0.113 4.113 15 C 0.114 3.886 16 N -0.606 5.606 17 C 0.497 3.503 18 O -0.580 6.580 19 C 0.112 3.888 20 N -0.607 5.607 21 C 0.103 3.897 22 C -0.144 4.144 23 C 0.103 3.897 24 N -0.732 5.732 25 C 0.704 3.296 26 O -0.649 6.649 27 C 0.110 3.890 28 C -0.114 4.114 29 H 0.041 0.959 30 H 0.030 0.970 31 H 0.072 0.928 32 H 0.373 0.627 33 H 0.249 0.751 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.111 0.889 40 H 0.143 0.857 41 H 0.104 0.896 42 H 0.057 0.943 43 H 0.079 0.921 44 H 0.129 0.871 45 H 0.114 0.886 46 H 0.066 0.934 47 H 0.417 0.583 48 H 0.076 0.924 49 H 0.105 0.895 50 H 0.061 0.939 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.541 8.356 -23.192 26.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.066 3.934 3 H 0.056 0.944 4 N -0.371 5.371 5 C -0.361 4.361 6 H 0.088 0.912 7 C -0.267 4.267 8 N -0.619 5.619 9 Si 0.794 3.206 10 H -0.221 1.221 11 H -0.224 1.224 12 H -0.196 1.196 13 C -0.101 4.101 14 C -0.151 4.151 15 C -0.008 4.008 16 N -0.339 5.339 17 C 0.285 3.715 18 O -0.460 6.460 19 C -0.015 4.015 20 N -0.342 5.342 21 C -0.019 4.019 22 C -0.182 4.182 23 C -0.020 4.020 24 N -0.389 5.389 25 C 0.404 3.596 26 O -0.532 6.532 27 C -0.012 4.012 28 C -0.153 4.153 29 H 0.060 0.940 30 H 0.049 0.951 31 H 0.091 0.909 32 H 0.205 0.795 33 H 0.057 0.943 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.129 0.871 40 H 0.161 0.839 41 H 0.122 0.878 42 H 0.076 0.924 43 H 0.098 0.902 44 H 0.147 0.853 45 H 0.132 0.868 46 H 0.084 0.916 47 H 0.255 0.745 48 H 0.094 0.906 49 H 0.124 0.876 50 H 0.080 0.920 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.112 8.356 -23.408 26.833 hybrid contribution -0.248 -0.451 1.038 1.158 sum 9.864 7.905 -22.370 25.695 Atomic orbital electron populations 1.22377 0.98305 1.00704 1.00482 1.20422 0.92321 0.94830 0.85840 0.94434 1.42572 1.78244 1.10263 1.06019 1.19535 1.34171 0.93922 0.88455 0.91206 1.25405 1.03503 0.96811 1.00953 1.69793 1.52999 1.09977 1.29112 0.85283 0.76655 0.78152 0.80557 1.22051 1.22396 1.19627 1.21259 0.95521 0.99493 0.93785 1.21881 1.01772 0.98978 0.92502 1.21585 0.79418 1.00998 0.98847 1.48257 1.07297 1.60398 1.17953 1.21675 0.91078 0.76817 0.81972 1.90628 1.76039 1.46637 1.32684 1.21382 0.88273 1.03664 0.88183 1.46466 1.63415 1.10926 1.13383 1.21899 0.97688 0.79384 1.02909 1.22221 0.97081 1.04847 0.94006 1.21832 1.01289 0.80255 0.98656 1.44954 1.65316 1.13771 1.14869 1.15704 0.78220 0.84083 0.81545 1.90905 1.59868 1.19399 1.83049 1.22021 0.99207 0.97186 0.82766 1.21833 0.95522 1.00751 0.97158 0.93996 0.95077 0.90944 0.79457 0.94257 0.91715 0.91902 0.89208 0.90340 0.90991 0.87122 0.83940 0.87750 0.92432 0.90183 0.85281 0.86769 0.91605 0.74527 0.90580 0.87637 0.92015 0.91529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.36 9.14 71.98 0.66 -4.70 16 2 C 0.17 6.36 2.47 44.99 0.11 6.47 16 3 H 0.04 1.43 8.08 -2.39 -0.02 1.41 16 4 N -0.73 -34.55 4.41 -322.93 -1.42 -35.98 16 5 C -0.23 -12.20 9.93 84.03 0.83 -11.37 16 6 H 0.07 3.64 7.83 -2.91 -0.02 3.62 16 7 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 8 N -0.97 -57.53 13.06 21.65 0.28 -57.25 16 9 Si 0.96 45.34 29.55 68.60 2.03 47.36 16 10 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 11 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 13 C -0.08 -2.37 1.79 -10.76 -0.02 -2.39 16 14 C -0.11 -2.74 5.04 30.67 0.15 -2.59 16 15 C 0.11 2.83 6.43 86.36 0.56 3.39 16 16 N -0.61 -15.20 2.97 -818.06 -2.43 -17.63 16 17 C 0.50 13.67 7.76 87.66 0.68 14.35 16 18 O -0.58 -20.19 15.84 -3.04 -0.05 -20.24 16 19 C 0.11 2.38 4.18 85.63 0.36 2.74 16 20 N -0.61 -12.95 2.30 -845.67 -1.95 -14.90 16 21 C 0.10 1.36 6.55 86.48 0.57 1.92 16 22 C -0.14 -0.98 6.20 30.75 0.19 -0.79 16 23 C 0.10 0.87 7.21 86.48 0.62 1.50 16 24 N -0.73 -12.64 5.59 -479.83 -2.68 -15.32 16 25 C 0.70 18.28 8.18 179.45 1.47 19.74 16 26 O -0.65 -22.83 16.50 -3.99 -0.07 -22.90 16 27 C 0.11 2.48 6.37 86.51 0.55 3.03 16 28 C -0.11 -3.19 5.24 30.82 0.16 -3.03 16 29 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.07 1.94 6.40 -2.39 -0.02 1.92 16 32 H 0.37 19.00 7.58 -92.70 -0.70 18.30 16 33 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 34 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.09 1.97 6.36 -2.39 -0.02 1.95 16 37 H 0.08 2.12 7.01 -2.39 -0.02 2.11 16 38 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.11 2.50 7.10 -2.38 -0.02 2.49 16 40 H 0.14 1.96 7.42 -2.39 -0.02 1.94 16 41 H 0.10 0.93 7.87 -2.39 -0.02 0.91 16 42 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.13 0.12 8.14 -2.39 -0.02 0.10 16 45 H 0.11 0.29 8.14 -2.38 -0.02 0.27 16 46 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.42 6.34 8.88 -92.71 -0.82 5.51 16 48 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 49 H 0.11 1.83 5.93 -2.39 -0.01 1.82 16 50 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 51 H 0.07 2.25 7.40 -2.39 -0.02 2.24 16 Total: -1.00 -79.20 397.39 0.49 -78.71 By element: Atomic # 1 Polarization: 34.15 SS G_CDS: -0.58 Total: 33.57 kcal Atomic # 6 Polarization: 17.22 SS G_CDS: 7.36 Total: 24.58 kcal Atomic # 7 Polarization: -132.88 SS G_CDS: -8.19 Total: -141.08 kcal Atomic # 8 Polarization: -43.03 SS G_CDS: -0.11 Total: -43.14 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -79.20 0.49 -78.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753273815.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.653 kcal (2) G-P(sol) polarization free energy of solvation -79.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds