Wall clock time and date at job start Tue Mar 31 2020 22:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47527 * 2 1 4 4 C 1.52995 * 109.47379 * 239.99589 * 2 1 3 5 5 C 1.50694 * 109.47561 * 174.99807 * 4 2 1 6 6 O 1.21286 * 120.00056 * 0.02562 * 5 4 2 7 7 N 1.34772 * 120.00519 * 179.97438 * 5 4 2 8 8 C 1.47485 * 125.65949 * 0.02562 * 7 5 4 9 9 C 1.55023 * 104.90047 * 204.01413 * 8 7 5 10 10 C 1.54532 * 101.52696 * 323.61571 * 9 8 7 11 11 C 1.47189 * 125.66574 * 180.02562 * 7 5 4 12 12 C 1.52274 * 110.16174 * 276.40325 * 10 9 8 13 13 C 1.53315 * 109.41301 * 297.17163 * 12 10 9 14 14 N 1.46926 * 108.70949 * 306.48991 * 13 12 10 15 15 C 1.36938 * 120.56186 * 234.20842 * 14 13 12 16 16 H 1.08001 * 120.00170 * 27.94449 * 15 14 13 17 17 C 1.38813 * 119.99728 * 207.94703 * 15 14 13 18 18 N 1.31619 * 120.00190 * 17.45056 * 17 15 14 19 19 Si 1.86802 * 119.99783 * 197.44222 * 17 15 14 20 20 H 1.48503 * 109.46922 * 60.00401 * 19 17 15 21 21 H 1.48497 * 109.47004 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47254 * 300.00404 * 19 17 15 23 23 C 1.46935 * 118.87300 * 54.22920 * 14 13 12 24 24 C 1.52275 * 110.15920 * 153.27960 * 10 9 8 25 25 N 1.46503 * 109.47122 * 119.99783 * 2 1 3 26 26 C 1.34774 * 119.99858 * 275.00114 * 25 2 1 27 27 N 1.34781 * 119.99601 * 179.97438 * 26 25 2 28 28 O 1.21585 * 120.00365 * 0.02562 * 26 25 2 29 29 H 1.09003 * 109.46890 * 60.00148 * 1 2 3 30 30 H 1.09005 * 109.47044 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47170 * 299.99733 * 1 2 3 32 32 H 1.09005 * 109.47010 * 55.00057 * 4 2 1 33 33 H 1.08996 * 109.47603 * 295.00425 * 4 2 1 34 34 H 1.08999 * 110.35363 * 85.16060 * 8 7 5 35 35 H 1.08998 * 110.35334 * 322.86992 * 8 7 5 36 36 H 1.08996 * 111.01738 * 205.55190 * 9 8 7 37 37 H 1.09002 * 111.01637 * 81.67238 * 9 8 7 38 38 H 1.08990 * 109.90735 * 59.13501 * 11 7 5 39 39 H 1.08999 * 110.05867 * 297.95768 * 11 7 5 40 40 H 1.08999 * 109.48235 * 57.15458 * 12 10 9 41 41 H 1.09000 * 109.48232 * 177.18994 * 12 10 9 42 42 H 1.09004 * 109.59963 * 186.72016 * 13 12 10 43 43 H 1.09001 * 109.59887 * 66.25523 * 13 12 10 44 44 H 0.97002 * 119.99750 * 179.97438 * 18 17 15 45 45 H 1.09009 * 109.59387 * 185.99799 * 23 14 13 46 46 H 1.09004 * 109.73101 * 65.60965 * 23 14 13 47 47 H 1.09006 * 109.48151 * 182.80096 * 24 10 9 48 48 H 1.08998 * 109.48259 * 302.82031 * 24 10 9 49 49 H 0.97004 * 120.00194 * 94.99890 * 25 2 1 50 50 H 0.97000 * 119.99973 * 0.02562 * 27 26 25 51 51 H 0.96998 * 119.99705 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5419 -0.6150 -1.3127 6 8 4.1451 -0.0211 -0.4441 7 7 4.2150 -1.1806 -2.3341 8 6 3.6108 -1.9291 -3.4522 9 6 4.7408 -2.8570 -3.9673 10 6 5.9839 -1.9558 -3.7932 11 6 5.6749 -1.1540 -2.5191 12 6 6.1305 -1.0267 -4.9907 13 6 6.3598 -1.8599 -6.2571 14 7 7.4942 -2.7648 -6.0270 15 6 8.5600 -2.7777 -6.8867 16 1 8.8168 -1.8877 -7.4420 17 6 9.3104 -3.9349 -7.0443 18 7 8.8222 -5.0939 -6.6562 19 14 11.0131 -3.8470 -7.8076 20 1 11.8801 -2.9667 -6.9837 21 1 11.6012 -5.2094 -7.8638 22 1 10.9114 -3.2952 -9.1825 23 6 7.4655 -3.6558 -4.8590 24 6 7.2293 -2.8108 -3.6018 25 7 2.0183 -0.6906 1.1962 26 6 2.1470 -0.0182 2.3571 27 7 2.5958 -0.6537 3.4577 28 8 1.8574 1.1614 2.4118 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6054 -0.2618 -2.1369 33 1 1.7517 -1.7715 -1.2055 34 1 3.2939 -1.2447 -4.2391 35 1 2.7658 -2.5204 -3.0997 36 1 4.5881 -3.1141 -5.0155 37 1 4.8197 -3.7545 -3.3539 38 1 6.1661 -1.6148 -1.6622 39 1 6.0184 -0.1260 -2.6351 40 1 5.2226 -0.4345 -5.1047 41 1 6.9805 -0.3626 -4.8338 42 1 6.5834 -1.1987 -7.0944 43 1 5.4658 -2.4432 -6.4778 44 1 9.3465 -5.9025 -6.7667 45 1 8.4182 -4.1787 -4.7745 46 1 6.6591 -4.3809 -4.9691 47 1 8.0908 -2.1652 -3.4306 48 1 7.0909 -3.4675 -2.7429 49 1 2.2490 -1.6318 1.1527 50 1 2.8265 -1.5948 3.4142 51 1 2.6888 -0.1697 4.2932 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754560348.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:05 Heat of formation + Delta-G solvation = -76.822021 kcal Electronic energy + Delta-G solvation = -30564.488548 eV Core-core repulsion = 26497.799266 eV Total energy + Delta-G solvation = -4066.689282 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.63034 -40.87220 -39.75328 -37.42262 -36.60836 -34.75773 -34.68052 -32.77752 -31.85516 -31.56292 -30.49903 -29.53028 -27.94732 -25.69938 -24.32652 -23.69643 -23.31880 -22.45099 -21.66275 -20.33321 -19.64211 -19.20792 -18.49506 -18.13938 -17.68070 -17.17519 -16.81530 -16.56109 -16.15792 -15.98315 -15.71647 -15.52332 -15.19009 -15.02098 -14.92869 -14.60222 -14.36067 -14.09034 -13.78953 -13.70952 -13.54880 -13.24623 -13.14342 -12.99925 -12.86118 -12.77474 -12.56170 -12.50458 -12.31738 -12.05375 -11.96933 -11.87829 -11.73088 -11.40128 -11.38279 -11.12718 -11.05628 -10.79280 -10.66330 -10.47487 -9.90086 -9.59739 -8.62104 -7.85542 -5.28685 1.46653 1.49083 1.55145 1.69124 2.01840 2.03884 2.30123 2.52423 3.27292 3.44015 3.65396 3.66651 3.73059 3.76941 3.83749 3.86729 4.22541 4.29221 4.33268 4.44879 4.45938 4.56684 4.64252 4.67579 4.70454 4.71912 4.79943 4.80053 4.86433 4.91388 4.96843 5.05865 5.09947 5.14711 5.22698 5.31362 5.34317 5.38590 5.43270 5.47026 5.58462 5.64621 5.68457 5.83125 5.92933 6.07747 6.42404 6.61694 7.15051 7.18847 7.22322 7.73109 7.91751 8.41124 9.19911 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.028293 B = 0.002193 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.421195 B =12764.809686 C =13121.124375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.173 3.827 3 H 0.053 0.947 4 C -0.133 4.133 5 C 0.516 3.484 6 O -0.583 6.583 7 N -0.614 5.614 8 C 0.104 3.896 9 C -0.120 4.120 10 C -0.052 4.052 11 C 0.125 3.875 12 C -0.106 4.106 13 C 0.144 3.856 14 N -0.610 5.610 15 C -0.261 4.261 16 H 0.061 0.939 17 C -0.048 4.048 18 N -0.930 5.930 19 Si 0.959 3.041 20 H -0.283 1.283 21 H -0.294 1.294 22 H -0.276 1.276 23 C 0.183 3.817 24 C -0.115 4.115 25 N -0.720 5.720 26 C 0.701 3.299 27 N -0.853 5.853 28 O -0.650 6.650 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.039 0.961 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.086 0.914 35 H 0.111 0.889 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.050 0.950 40 H 0.080 0.920 41 H 0.044 0.956 42 H 0.047 0.953 43 H 0.031 0.969 44 H 0.249 0.751 45 H 0.047 0.953 46 H 0.010 0.990 47 H 0.040 0.960 48 H 0.065 0.935 49 H 0.406 0.594 50 H 0.411 0.589 51 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.978 2.889 12.857 23.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.067 3.933 3 H 0.072 0.928 4 C -0.173 4.173 5 C 0.307 3.693 6 O -0.463 6.463 7 N -0.348 5.348 8 C -0.018 4.018 9 C -0.158 4.158 10 C -0.053 4.053 11 C 0.001 3.999 12 C -0.145 4.145 13 C 0.019 3.981 14 N -0.333 5.333 15 C -0.392 4.392 16 H 0.079 0.921 17 C -0.243 4.243 18 N -0.577 5.577 19 Si 0.788 3.212 20 H -0.210 1.210 21 H -0.220 1.220 22 H -0.202 1.202 23 C 0.057 3.943 24 C -0.154 4.154 25 N -0.376 5.376 26 C 0.399 3.601 27 N -0.422 5.422 28 O -0.533 6.533 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.058 0.942 32 H 0.155 0.845 33 H 0.152 0.848 34 H 0.104 0.896 35 H 0.129 0.871 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.099 0.901 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.049 0.951 44 H 0.058 0.942 45 H 0.065 0.935 46 H 0.028 0.972 47 H 0.059 0.941 48 H 0.084 0.916 49 H 0.241 0.759 50 H 0.242 0.758 51 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -18.923 4.049 13.202 23.426 hybrid contribution 1.995 -0.718 -0.130 2.125 sum -16.928 3.331 13.072 21.645 Atomic orbital electron populations 1.22125 0.92952 1.03534 1.02590 1.20530 0.94495 0.95998 0.82314 0.92825 1.22080 0.89183 1.05708 1.00287 1.21034 0.91230 0.77490 0.79561 1.90753 1.71458 1.44203 1.39853 1.48711 1.07181 1.54269 1.24596 1.22600 0.96620 0.94188 0.88356 1.22815 0.92977 0.97476 1.02552 1.20831 0.95745 0.95273 0.93437 1.21789 0.81612 0.99352 0.97098 1.21768 1.00982 0.97017 0.94755 1.21099 0.89692 0.91861 0.95482 1.44284 1.18530 1.44647 1.25877 1.19427 1.05501 0.94714 1.19526 0.92104 1.25678 1.02735 0.94750 1.01182 1.70146 1.37175 0.97487 1.52851 0.85463 0.80920 0.76181 0.78625 1.20950 1.21999 1.20183 1.20546 0.99105 0.90432 0.84199 1.21911 0.96512 0.98337 0.98659 1.44889 1.70690 1.13711 1.08298 1.16200 0.77707 0.84425 0.81805 1.42796 1.72460 1.15560 1.11361 1.90901 1.59926 1.16789 1.85664 0.89638 0.90055 0.94178 0.84475 0.84755 0.89629 0.87052 0.89744 0.90694 0.92800 0.93110 0.90142 0.93737 0.93430 0.95092 0.94161 0.93484 0.97170 0.94114 0.91626 0.75865 0.75843 0.75048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.48 71.98 0.68 -1.17 16 2 C 0.17 2.93 2.13 44.99 0.10 3.03 16 3 H 0.05 1.40 7.39 -2.39 -0.02 1.38 16 4 C -0.13 -1.51 4.25 29.84 0.13 -1.39 16 5 C 0.52 11.24 7.71 87.66 0.68 11.92 16 6 O -0.58 -18.65 15.68 -3.05 -0.05 -18.70 16 7 N -0.61 -12.88 3.33 -812.28 -2.71 -15.58 16 8 C 0.10 1.56 6.37 86.88 0.55 2.12 16 9 C -0.12 -2.71 4.92 31.81 0.16 -2.55 16 10 C -0.05 -1.47 0.55 -51.91 -0.03 -1.50 16 11 C 0.12 3.35 6.05 86.48 0.52 3.87 16 12 C -0.11 -3.21 4.74 30.46 0.14 -3.06 16 13 C 0.14 5.39 6.18 86.40 0.53 5.93 16 14 N -0.61 -28.99 2.98 -698.58 -2.08 -31.08 16 15 C -0.26 -14.04 9.58 84.03 0.80 -13.24 16 16 H 0.06 3.23 7.89 -2.91 -0.02 3.21 16 17 C -0.05 -2.62 4.90 84.86 0.42 -2.20 16 18 N -0.93 -53.47 11.20 21.65 0.24 -53.23 16 19 Si 0.96 44.38 29.59 68.60 2.03 46.41 16 20 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 21 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 23 C 0.18 8.23 5.03 86.40 0.43 8.67 16 24 C -0.11 -4.04 4.72 30.46 0.14 -3.89 16 25 N -0.72 -12.55 4.22 -457.82 -1.93 -14.48 16 26 C 0.70 16.42 8.80 179.05 1.58 18.00 16 27 N -0.85 -12.20 8.88 -184.74 -1.64 -13.84 16 28 O -0.65 -21.98 16.84 -3.98 -0.07 -22.04 16 29 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.14 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.13 0.62 7.85 -2.39 -0.02 0.60 16 34 H 0.09 1.11 7.74 -2.39 -0.02 1.09 16 35 H 0.11 0.89 7.48 -2.39 -0.02 0.88 16 36 H 0.08 2.10 6.08 -2.39 -0.01 2.08 16 37 H 0.07 1.69 8.01 -2.39 -0.02 1.67 16 38 H 0.05 1.56 7.78 -2.39 -0.02 1.55 16 39 H 0.05 1.50 7.83 -2.39 -0.02 1.49 16 40 H 0.08 1.98 7.47 -2.39 -0.02 1.96 16 41 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.05 1.81 7.93 -2.38 -0.02 1.79 16 43 H 0.03 1.11 6.47 -2.39 -0.02 1.09 16 44 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 45 H 0.05 2.49 6.02 -2.38 -0.01 2.47 16 46 H 0.01 0.47 7.56 -2.38 -0.02 0.45 16 47 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 48 H 0.07 2.08 8.11 -2.39 -0.02 2.06 16 49 H 0.41 4.69 8.62 -92.71 -0.80 3.90 16 50 H 0.41 3.12 8.84 -92.71 -0.82 2.30 16 51 H 0.42 5.30 8.93 -92.71 -0.83 4.47 16 Total: -1.00 -80.47 394.63 -0.85 -81.32 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -1.48 Total: 16.69 kcal Atomic # 6 Polarization: 17.68 SS G_CDS: 6.84 Total: 24.52 kcal Atomic # 7 Polarization: -120.09 SS G_CDS: -8.12 Total: -128.21 kcal Atomic # 8 Polarization: -40.63 SS G_CDS: -0.11 Total: -40.74 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -80.47 -0.85 -81.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754560348.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.502 kcal (2) G-P(sol) polarization free energy of solvation -80.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds