Wall clock time and date at job start Tue Mar 31 2020 21:49:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08999 * 110.06392 * 2 1
4 4 C 1.54000 * 109.91329 * 238.79533 * 2 1 3
5 5 H 1.08998 * 110.30403 * 120.40869 * 4 2 1
6 6 C 1.50703 * 110.31008 * 358.34223 * 4 2 1
7 7 O 1.21282 * 119.99907 * 269.71097 * 6 4 2
8 8 N 1.34776 * 120.00164 * 89.70938 * 6 4 2
9 9 C 1.46502 * 119.99840 * 5.02939 * 8 6 4
10 10 C 1.46506 * 119.99746 * 185.03390 * 8 6 4
11 11 C 1.53512 * 114.16877 * 120.00035 * 10 8 6
12 12 N 1.47483 * 87.93236 * 87.61848 * 11 10 8
13 13 C 1.46903 * 110.99917 * 138.70058 * 12 11 10
14 14 C 1.50702 * 109.47268 * 170.00215 * 13 12 11
15 15 O 1.21298 * 119.99606 * 359.97438 * 14 13 12
16 16 N 1.34771 * 119.99982 * 180.02562 * 14 13 12
17 17 C 1.37100 * 119.99843 * 179.97438 * 16 14 13
18 18 H 1.08003 * 119.99950 * 359.97438 * 17 16 14
19 19 C 1.38948 * 120.00333 * 180.02562 * 17 16 14
20 20 N 1.31418 * 119.99752 * 359.97438 * 19 17 16
21 21 Si 1.86799 * 120.00429 * 179.97438 * 19 17 16
22 22 H 1.48498 * 109.46950 * 179.97438 * 21 19 17
23 23 H 1.48504 * 109.46991 * 300.00027 * 21 19 17
24 24 H 1.48504 * 109.47078 * 59.99663 * 21 19 17
25 25 C 1.47482 * 87.83592 * 27.01072 * 12 11 10
26 26 C 1.54593 * 105.13868 * 239.42325 * 4 2 1
27 27 C 1.54936 * 102.92122 * 338.04097 * 26 4 2
28 28 N 1.47898 * 109.91667 * 121.20973 * 2 1 3
29 29 C 1.46896 * 111.00037 * 265.19312 * 28 2 1
30 30 H 1.09004 * 109.47521 * 183.08379 * 1 2 3
31 31 H 1.09004 * 109.47016 * 303.08091 * 1 2 3
32 32 H 1.08998 * 109.47598 * 63.07744 * 1 2 3
33 33 H 1.09000 * 109.46994 * 275.16606 * 9 8 6
34 34 H 1.08994 * 109.47382 * 35.17194 * 9 8 6
35 35 H 1.09000 * 109.46469 * 155.17560 * 9 8 6
36 36 H 1.08994 * 113.37971 * 346.91810 * 10 8 6
37 37 H 1.08999 * 113.48012 * 332.85212 * 11 10 8
38 38 H 1.09007 * 113.47128 * 202.38411 * 11 10 8
39 39 H 1.08998 * 109.46832 * 49.99988 * 13 12 11
40 40 H 1.08995 * 109.46924 * 289.99812 * 13 12 11
41 41 H 0.96993 * 120.00032 * 0.02562 * 16 14 13
42 42 H 0.97005 * 119.99727 * 0.02562 * 20 19 17
43 43 H 1.08998 * 113.47993 * 87.75513 * 25 12 11
44 44 H 1.09005 * 113.47377 * 218.22806 * 25 12 11
45 45 H 1.08994 * 110.72489 * 96.40586 * 26 4 2
46 46 H 1.09003 * 110.71776 * 219.68720 * 26 4 2
47 47 H 1.08991 * 110.67322 * 278.98016 * 27 26 4
48 48 H 1.09003 * 110.80746 * 155.91409 * 27 26 4
49 49 H 1.09001 * 109.47460 * 59.99930 * 29 28 2
50 50 H 1.08999 * 109.47402 * 180.02562 * 29 28 2
51 51 H 1.09007 * 109.46884 * 300.00359 * 29 28 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9039 1.0238 0.0000
4 6 2.0545 -0.7502 -1.2384
5 1 2.6698 -0.0890 -1.8486
6 6 0.9044 -1.2892 -2.0495
7 8 0.4736 -2.4008 -1.8265
8 7 0.3545 -0.5361 -3.0225
9 6 0.9435 0.7605 -3.3664
10 6 -0.8323 -1.0140 -3.7364
11 6 -2.0550 -0.0946 -3.6090
12 7 -1.5528 0.6467 -4.7809
13 6 -2.6509 0.9998 -5.6906
14 6 -2.1464 1.9575 -6.7392
15 8 -0.9862 2.3114 -6.7293
16 7 -2.9845 2.4214 -7.6872
17 6 -2.5256 3.2930 -8.6408
18 1 -1.4926 3.6082 -8.6320
19 6 -3.3896 3.7718 -9.6179
20 7 -4.6467 3.3887 -9.6283
21 14 -2.7646 4.9600 -10.9167
22 1 -3.8748 5.3172 -11.8361
23 1 -2.2518 6.1883 -10.2582
24 1 -1.6701 4.3186 -11.6887
25 6 -0.8881 -0.5970 -5.2127
26 6 2.9057 -1.9118 -0.6763
27 6 3.2681 -1.4186 0.7470
28 7 2.0338 -0.7205 1.1893
29 6 2.3212 0.2121 2.2872
30 1 -0.3634 -1.0262 0.0553
31 1 -0.3633 0.5609 0.8611
32 1 -0.3634 0.4653 -0.9162
33 1 0.5545 1.5258 -2.6948
34 1 2.0274 0.7054 -3.2655
35 1 0.6867 1.0149 -4.3947
36 1 -1.0465 -2.0684 -3.5619
37 1 -2.0614 0.4950 -2.6923
38 1 -3.0017 -0.6037 -3.7902
39 1 -3.4543 1.4711 -5.1245
40 1 -3.0271 0.0978 -6.1733
41 1 -3.9124 2.1392 -7.6944
42 1 -4.9714 2.7720 -8.9536
43 1 -1.5233 -1.2401 -5.8218
44 1 0.0946 -0.4331 -5.6550
45 1 2.3213 -2.8305 -0.6291
46 1 3.8051 -2.0558 -1.2752
47 1 4.1096 -0.7269 0.7120
48 1 3.4903 -2.2599 1.4035
49 1 1.4096 0.7434 2.5607
50 1 2.6905 -0.3439 3.1490
51 1 3.0772 0.9289 1.9665
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001754575824.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:49:06
Heat of formation + Delta-G solvation = -3.520191 kcal
Electronic energy + Delta-G solvation = -30493.121792 eV
Core-core repulsion = 26429.611116 eV
Total energy + Delta-G solvation = -4063.510676 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 4.88 seconds
Orbital eigenvalues (eV)
-41.24635 -40.06155 -38.29902 -37.74634 -34.97153 -34.24050 -32.64965 -31.66828
-31.17152 -30.01227 -27.11417 -26.96418 -26.00177 -25.23474 -25.14676 -23.66360
-22.31978 -21.23468 -19.75086 -19.69052 -18.41545 -17.93571 -17.54027 -16.53546
-16.47157 -16.26833 -15.67423 -15.60001 -15.28302 -14.86732 -14.81033 -14.36327
-14.12153 -13.75655 -13.70295 -13.45340 -13.18916 -13.11104 -12.91646 -12.57506
-12.47905 -12.46730 -12.16777 -12.03503 -11.90903 -11.62513 -11.52923 -11.44107
-11.26255 -11.15078 -11.02688 -10.97920 -10.91527 -10.77892 -10.22181 -9.87451
-9.82154 -9.54914 -8.90092 -8.80508 -8.67732 -8.28755 -8.04414 -6.76342
-3.89587 2.46250 2.80238 3.29607 3.33341 3.53650 3.59163 3.82205
3.92223 4.15807 4.21368 4.28461 4.37917 4.50560 4.73520 4.79480
4.85548 4.88778 4.93051 5.02626 5.08369 5.13734 5.14979 5.25132
5.29000 5.34828 5.35677 5.43588 5.47868 5.52562 5.53428 5.54528
5.57276 5.60556 5.70418 5.73755 5.75083 5.86300 5.95773 5.99355
6.07279 6.15163 6.38157 6.49635 6.54850 6.68004 7.00165 7.33580
7.78988 8.06688 8.07326 8.59301 8.79504 9.46705 9.87814 10.67060
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.025836 B = 0.002106 C = 0.002066
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1083.515962 B =13290.854108 C =13548.020699
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C 0.082 3.918
3 H 0.061 0.939
4 C -0.121 4.121
5 H 0.098 0.902
6 C 0.534 3.466
7 O -0.539 6.539
8 N -0.588 5.588
9 C 0.074 3.926
10 C 0.117 3.883
11 C -0.017 4.017
12 N -0.437 5.437
13 C 0.007 3.993
14 C 0.450 3.550
15 O -0.571 6.571
16 N -0.579 5.579
17 C -0.381 4.381
18 H 0.098 0.902
19 C -0.011 4.011
20 N -0.902 5.902
21 Si 1.091 2.909
22 H -0.279 1.279
23 H -0.284 1.284
24 H -0.284 1.284
25 C -0.007 4.007
26 C -0.113 4.113
27 C 0.036 3.964
28 N -0.516 5.516
29 C 0.016 3.984
30 H 0.071 0.929
31 H 0.056 0.944
32 H 0.065 0.935
33 H 0.056 0.944
34 H 0.060 0.940
35 H 0.105 0.895
36 H 0.113 0.887
37 H 0.087 0.913
38 H 0.077 0.923
39 H 0.087 0.913
40 H 0.060 0.940
41 H 0.375 0.625
42 H 0.261 0.739
43 H 0.079 0.921
44 H 0.092 0.908
45 H 0.096 0.904
46 H 0.075 0.925
47 H 0.045 0.955
48 H 0.085 0.915
49 H 0.069 0.931
50 H 0.070 0.930
51 H 0.028 0.972
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.232 -9.094 19.918 24.609
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.026 4.026
3 H 0.079 0.921
4 C -0.143 4.143
5 H 0.116 0.884
6 C 0.323 3.677
7 O -0.416 6.416
8 N -0.320 5.320
9 C -0.068 4.068
10 C 0.011 3.989
11 C -0.148 4.148
12 N -0.159 5.159
13 C -0.125 4.125
14 C 0.235 3.765
15 O -0.453 6.453
16 N -0.217 5.217
17 C -0.510 4.510
18 H 0.116 0.884
19 C -0.213 4.213
20 N -0.541 5.541
21 Si 0.917 3.083
22 H -0.204 1.204
23 H -0.210 1.210
24 H -0.210 1.210
25 C -0.136 4.136
26 C -0.151 4.151
27 C -0.092 4.092
28 N -0.240 5.240
29 C -0.133 4.133
30 H 0.090 0.910
31 H 0.075 0.925
32 H 0.084 0.916
33 H 0.075 0.925
34 H 0.078 0.922
35 H 0.124 0.876
36 H 0.131 0.869
37 H 0.105 0.895
38 H 0.095 0.905
39 H 0.105 0.895
40 H 0.078 0.922
41 H 0.207 0.793
42 H 0.072 0.928
43 H 0.097 0.903
44 H 0.111 0.889
45 H 0.115 0.885
46 H 0.093 0.907
47 H 0.064 0.936
48 H 0.104 0.896
49 H 0.088 0.912
50 H 0.089 0.911
51 H 0.046 0.954
Dipole moment (debyes) X Y Z Total
from point charges 11.321 -8.233 18.943 23.553
hybrid contribution -0.168 -0.866 0.869 1.238
sum 11.153 -9.099 19.812 24.489
Atomic orbital electron populations
1.21970 0.93469 1.03393 1.01893 1.22195 0.96875 0.95484 0.88078
0.92145 1.22333 0.96147 0.99184 0.96624 0.88358 1.20180 0.83633
0.84733 0.79183 1.90664 1.63302 1.19679 1.67914 1.47433 1.28391
1.20381 1.35745 1.21992 0.96776 0.83266 1.04778 1.22024 0.85532
0.98818 0.92501 1.24353 0.97255 0.96056 0.97117 1.68856 1.18555
1.24515 1.03961 1.22514 0.94721 0.99484 0.95790 1.19572 0.87101
0.85800 0.84009 1.90509 1.17682 1.61687 1.75448 1.41953 1.10937
1.42277 1.26562 1.20506 0.99539 1.23347 1.07611 0.88394 1.26504
0.93980 1.00716 1.00088 1.70909 1.14815 1.32576 1.35802 0.83135
0.75262 0.75026 0.74871 1.20423 1.21012 1.21044 1.24302 1.02193
0.91463 0.95680 1.22522 0.99180 0.98657 0.94717 1.23240 0.91159
0.98522 0.96242 1.64710 1.26625 1.26312 1.06355 1.22526 1.00701
0.95225 0.94819 0.91021 0.92467 0.91630 0.92535 0.92165 0.87608
0.86900 0.89492 0.90484 0.89469 0.92217 0.79256 0.92811 0.90292
0.88938 0.88546 0.90662 0.93637 0.89638 0.91237 0.91138 0.95360
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.55 8.36 37.16 0.31 -1.24 16
2 C 0.08 0.77 3.09 -66.64 -0.21 0.57 16
3 H 0.06 0.51 7.73 -51.93 -0.40 0.11 16
4 C -0.12 -1.17 2.79 -90.41 -0.25 -1.42 16
5 H 0.10 0.81 6.05 -51.93 -0.31 0.49 16
6 C 0.53 6.51 4.62 -10.98 -0.05 6.46 16
7 O -0.54 -8.17 14.63 5.56 0.08 -8.09 16
8 N -0.59 -6.93 2.42 -173.61 -0.42 -7.36 16
9 C 0.07 0.84 9.05 59.85 0.54 1.38 16
10 C 0.12 1.41 4.68 -67.71 -0.32 1.10 16
11 C -0.02 -0.21 7.31 -7.54 -0.06 -0.26 16
12 N -0.44 -6.62 4.29 -246.08 -1.06 -7.68 16
13 C 0.01 0.12 5.30 -4.97 -0.03 0.09 16
14 C 0.45 10.39 7.85 -10.99 -0.09 10.30 16
15 O -0.57 -15.18 16.01 5.54 0.09 -15.09 16
16 N -0.58 -14.39 5.28 -10.96 -0.06 -14.45 16
17 C -0.38 -10.62 9.68 -14.93 -0.14 -10.77 16
18 H 0.10 2.89 7.16 -52.48 -0.38 2.52 16
19 C -0.01 -0.29 5.50 -17.47 -0.10 -0.38 16
20 N -0.90 -25.17 13.68 55.50 0.76 -24.41 16
21 Si 1.09 24.15 29.92 -169.99 -5.09 19.07 16
22 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16
23 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16
24 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16
25 C -0.01 -0.09 6.72 -7.54 -0.05 -0.14 16
26 C -0.11 -1.01 6.55 -24.87 -0.16 -1.18 16
27 C 0.04 0.28 6.56 -1.90 -0.01 0.27 16
28 N -0.52 -4.75 5.18 -230.79 -1.20 -5.94 16
29 C 0.02 0.11 9.40 60.06 0.56 0.68 16
30 H 0.07 0.90 7.20 -51.93 -0.37 0.53 16
31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16
32 H 0.06 0.70 6.27 -51.93 -0.33 0.38 16
33 H 0.06 0.62 7.71 -51.93 -0.40 0.22 16
34 H 0.06 0.55 6.19 -51.93 -0.32 0.23 16
35 H 0.11 1.50 5.50 -51.93 -0.29 1.22 16
36 H 0.11 1.39 7.27 -51.93 -0.38 1.01 16
37 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16
38 H 0.08 0.81 7.91 -51.93 -0.41 0.40 16
39 H 0.09 1.34 8.08 -51.93 -0.42 0.92 16
40 H 0.06 0.89 7.30 -51.93 -0.38 0.51 16
41 H 0.37 8.61 6.73 -40.82 -0.27 8.33 16
42 H 0.26 6.98 6.78 -40.82 -0.28 6.71 16
43 H 0.08 0.99 7.42 -51.93 -0.39 0.60 16
44 H 0.09 1.37 7.34 -51.93 -0.38 0.99 16
45 H 0.10 1.08 6.84 -51.93 -0.36 0.73 16
46 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16
47 H 0.05 0.31 7.96 -51.93 -0.41 -0.10 16
48 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16
49 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16
50 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16
51 H 0.03 0.18 8.00 -51.93 -0.42 -0.23 16
LS Contribution 394.50 15.07 5.95 5.95
Total: -1.00 -33.69 394.50 -9.20 -42.90
By element:
Atomic # 1 Polarization: 17.87 SS G_CDS: -8.22 Total: 9.66 kcal
Atomic # 6 Polarization: 5.50 SS G_CDS: -0.04 Total: 5.45 kcal
Atomic # 7 Polarization: -57.86 SS G_CDS: -1.97 Total: -59.83 kcal
Atomic # 8 Polarization: -23.36 SS G_CDS: 0.17 Total: -23.19 kcal
Atomic # 14 Polarization: 24.15 SS G_CDS: -5.09 Total: 19.07 kcal
Total LS contribution 5.95 Total: 5.95 kcal
Total: -33.69 -9.20 -42.90 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001754575824.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 39.377 kcal
(2) G-P(sol) polarization free energy of solvation -33.693 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.684 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.204 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.897 kcal
(6) G-S(sol) free energy of system = (1) + (5) -3.520 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 4.89 seconds