Wall clock time and date at job start Tue Mar 31 2020 21:49:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08999 * 110.06392 * 2 1
4 4 C 1.54000 * 109.91329 * 238.79533 * 2 1 3
5 5 H 1.08998 * 110.30403 * 120.40869 * 4 2 1
6 6 C 1.50703 * 110.31008 * 358.34223 * 4 2 1
7 7 O 1.21282 * 119.99907 * 269.71097 * 6 4 2
8 8 N 1.34776 * 120.00164 * 89.70938 * 6 4 2
9 9 C 1.46502 * 119.99840 * 5.02939 * 8 6 4
10 10 C 1.46506 * 119.99746 * 185.03390 * 8 6 4
11 11 C 1.53512 * 114.16877 * 120.00035 * 10 8 6
12 12 N 1.47483 * 87.93236 * 87.61848 * 11 10 8
13 13 C 1.46903 * 110.99917 * 138.70058 * 12 11 10
14 14 C 1.50702 * 109.47268 * 170.00215 * 13 12 11
15 15 O 1.21298 * 119.99606 * 359.97438 * 14 13 12
16 16 N 1.34771 * 119.99982 * 180.02562 * 14 13 12
17 17 C 1.37100 * 119.99843 * 179.97438 * 16 14 13
18 18 H 1.08003 * 119.99950 * 359.97438 * 17 16 14
19 19 C 1.38948 * 120.00333 * 180.02562 * 17 16 14
20 20 N 1.31418 * 119.99752 * 359.97438 * 19 17 16
21 21 Si 1.86799 * 120.00429 * 179.97438 * 19 17 16
22 22 H 1.48498 * 109.46950 * 179.97438 * 21 19 17
23 23 H 1.48504 * 109.46991 * 300.00027 * 21 19 17
24 24 H 1.48504 * 109.47078 * 59.99663 * 21 19 17
25 25 C 1.47482 * 87.83592 * 27.01072 * 12 11 10
26 26 C 1.54593 * 105.13868 * 239.42325 * 4 2 1
27 27 C 1.54936 * 102.92122 * 338.04097 * 26 4 2
28 28 N 1.47898 * 109.91667 * 121.20973 * 2 1 3
29 29 C 1.46896 * 111.00037 * 265.19312 * 28 2 1
30 30 H 1.09004 * 109.47521 * 183.08379 * 1 2 3
31 31 H 1.09004 * 109.47016 * 303.08091 * 1 2 3
32 32 H 1.08998 * 109.47598 * 63.07744 * 1 2 3
33 33 H 1.09000 * 109.46994 * 275.16606 * 9 8 6
34 34 H 1.08994 * 109.47382 * 35.17194 * 9 8 6
35 35 H 1.09000 * 109.46469 * 155.17560 * 9 8 6
36 36 H 1.08994 * 113.37971 * 346.91810 * 10 8 6
37 37 H 1.08999 * 113.48012 * 332.85212 * 11 10 8
38 38 H 1.09007 * 113.47128 * 202.38411 * 11 10 8
39 39 H 1.08998 * 109.46832 * 49.99988 * 13 12 11
40 40 H 1.08995 * 109.46924 * 289.99812 * 13 12 11
41 41 H 0.96993 * 120.00032 * 0.02562 * 16 14 13
42 42 H 0.97005 * 119.99727 * 0.02562 * 20 19 17
43 43 H 1.08998 * 113.47993 * 87.75513 * 25 12 11
44 44 H 1.09005 * 113.47377 * 218.22806 * 25 12 11
45 45 H 1.08994 * 110.72489 * 96.40586 * 26 4 2
46 46 H 1.09003 * 110.71776 * 219.68720 * 26 4 2
47 47 H 1.08991 * 110.67322 * 278.98016 * 27 26 4
48 48 H 1.09003 * 110.80746 * 155.91409 * 27 26 4
49 49 H 1.09001 * 109.47460 * 59.99930 * 29 28 2
50 50 H 1.08999 * 109.47402 * 180.02562 * 29 28 2
51 51 H 1.09007 * 109.46884 * 300.00359 * 29 28 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9039 1.0238 0.0000
4 6 2.0545 -0.7502 -1.2384
5 1 2.6698 -0.0890 -1.8486
6 6 0.9044 -1.2892 -2.0495
7 8 0.4736 -2.4008 -1.8265
8 7 0.3545 -0.5361 -3.0225
9 6 0.9435 0.7605 -3.3664
10 6 -0.8323 -1.0140 -3.7364
11 6 -2.0550 -0.0946 -3.6090
12 7 -1.5528 0.6467 -4.7809
13 6 -2.6509 0.9998 -5.6906
14 6 -2.1464 1.9575 -6.7392
15 8 -0.9862 2.3114 -6.7293
16 7 -2.9845 2.4214 -7.6872
17 6 -2.5256 3.2930 -8.6408
18 1 -1.4926 3.6082 -8.6320
19 6 -3.3896 3.7718 -9.6179
20 7 -4.6467 3.3887 -9.6283
21 14 -2.7646 4.9600 -10.9167
22 1 -3.8748 5.3172 -11.8361
23 1 -2.2518 6.1883 -10.2582
24 1 -1.6701 4.3186 -11.6887
25 6 -0.8881 -0.5970 -5.2127
26 6 2.9057 -1.9118 -0.6763
27 6 3.2681 -1.4186 0.7470
28 7 2.0338 -0.7205 1.1893
29 6 2.3212 0.2121 2.2872
30 1 -0.3634 -1.0262 0.0553
31 1 -0.3633 0.5609 0.8611
32 1 -0.3634 0.4653 -0.9162
33 1 0.5545 1.5258 -2.6948
34 1 2.0274 0.7054 -3.2655
35 1 0.6867 1.0149 -4.3947
36 1 -1.0465 -2.0684 -3.5619
37 1 -2.0614 0.4950 -2.6923
38 1 -3.0017 -0.6037 -3.7902
39 1 -3.4543 1.4711 -5.1245
40 1 -3.0271 0.0978 -6.1733
41 1 -3.9124 2.1392 -7.6944
42 1 -4.9714 2.7720 -8.9536
43 1 -1.5233 -1.2401 -5.8218
44 1 0.0946 -0.4331 -5.6550
45 1 2.3213 -2.8305 -0.6291
46 1 3.8051 -2.0558 -1.2752
47 1 4.1096 -0.7269 0.7120
48 1 3.4903 -2.2599 1.4035
49 1 1.4096 0.7434 2.5607
50 1 2.6905 -0.3439 3.1490
51 1 3.0772 0.9289 1.9665
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001754575824.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:49:02
Heat of formation + Delta-G solvation = -28.737326 kcal
Electronic energy + Delta-G solvation = -30494.215289 eV
Core-core repulsion = 26429.611116 eV
Total energy + Delta-G solvation = -4064.604173 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 4.78 seconds
Orbital eigenvalues (eV)
-42.23217 -41.07295 -39.85049 -38.86736 -36.36666 -35.91137 -33.41792 -33.12172
-32.39614 -31.30838 -28.17129 -27.75760 -27.13211 -26.69388 -25.87331 -25.15581
-23.23898 -21.93418 -21.48179 -20.63665 -19.95843 -19.35653 -18.51786 -18.08934
-17.38707 -17.30840 -16.96166 -16.56146 -16.37168 -16.14704 -15.83414 -15.58013
-15.44795 -15.20421 -14.91595 -14.53707 -14.44557 -13.95331 -13.79890 -13.62107
-13.43232 -13.35127 -13.31824 -13.13905 -12.95526 -12.85614 -12.70546 -12.61708
-12.29142 -12.12884 -12.12114 -11.94185 -11.92434 -11.89797 -11.86395 -11.63589
-11.49704 -10.81584 -10.42143 -10.08974 -9.80354 -9.64876 -9.42090 -8.91249
-6.05008 1.52197 1.53176 1.54293 1.82165 1.87526 2.03329 2.39976
2.72967 2.96443 3.16846 3.25971 3.32021 3.42935 3.53248 3.70266
3.76724 4.02572 4.05803 4.14087 4.19847 4.27729 4.30255 4.34897
4.40712 4.41281 4.43539 4.47915 4.48918 4.55397 4.64431 4.70948
4.75886 4.77372 4.78956 4.81814 4.96477 5.00101 5.02304 5.12683
5.22406 5.23569 5.29075 5.54042 5.60093 5.86781 5.89251 5.98060
6.08125 6.39172 6.59543 6.77347 7.12310 7.46751 7.96267 8.56518
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.025836 B = 0.002106 C = 0.002066
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1083.515962 B =13290.854108 C =13548.020699
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C 0.084 3.916
3 H 0.075 0.925
4 C -0.120 4.120
5 H 0.117 0.883
6 C 0.534 3.466
7 O -0.572 6.572
8 N -0.587 5.587
9 C 0.081 3.919
10 C 0.122 3.878
11 C -0.006 4.006
12 N -0.459 5.459
13 C 0.020 3.980
14 C 0.449 3.551
15 O -0.609 6.609
16 N -0.591 5.591
17 C -0.406 4.406
18 H 0.073 0.927
19 C -0.045 4.045
20 N -0.919 5.919
21 Si 1.133 2.867
22 H -0.274 1.274
23 H -0.273 1.273
24 H -0.273 1.273
25 C -0.006 4.006
26 C -0.112 4.112
27 C 0.040 3.960
28 N -0.536 5.536
29 C 0.016 3.984
30 H 0.045 0.955
31 H 0.063 0.937
32 H 0.060 0.940
33 H 0.061 0.939
34 H 0.083 0.917
35 H 0.077 0.923
36 H 0.114 0.886
37 H 0.089 0.911
38 H 0.100 0.900
39 H 0.108 0.892
40 H 0.085 0.915
41 H 0.383 0.617
42 H 0.259 0.741
43 H 0.092 0.908
44 H 0.074 0.926
45 H 0.069 0.931
46 H 0.092 0.908
47 H 0.063 0.937
48 H 0.090 0.910
49 H 0.068 0.932
50 H 0.078 0.922
51 H 0.038 0.962
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.839 -8.938 20.962 25.680
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.025 4.025
3 H 0.093 0.907
4 C -0.142 4.142
5 H 0.135 0.865
6 C 0.324 3.676
7 O -0.452 6.452
8 N -0.318 5.318
9 C -0.062 4.062
10 C 0.017 3.983
11 C -0.136 4.136
12 N -0.181 5.181
13 C -0.112 4.112
14 C 0.236 3.764
15 O -0.494 6.494
16 N -0.231 5.231
17 C -0.536 4.536
18 H 0.091 0.909
19 C -0.243 4.243
20 N -0.558 5.558
21 Si 0.953 3.047
22 H -0.199 1.199
23 H -0.198 1.198
24 H -0.198 1.198
25 C -0.136 4.136
26 C -0.150 4.150
27 C -0.087 4.087
28 N -0.261 5.261
29 C -0.132 4.132
30 H 0.064 0.936
31 H 0.082 0.918
32 H 0.079 0.921
33 H 0.079 0.921
34 H 0.101 0.899
35 H 0.095 0.905
36 H 0.132 0.868
37 H 0.107 0.893
38 H 0.118 0.882
39 H 0.126 0.874
40 H 0.103 0.897
41 H 0.217 0.783
42 H 0.070 0.930
43 H 0.110 0.890
44 H 0.092 0.908
45 H 0.088 0.912
46 H 0.110 0.890
47 H 0.081 0.919
48 H 0.108 0.892
49 H 0.087 0.913
50 H 0.096 0.904
51 H 0.056 0.944
Dipole moment (debyes) X Y Z Total
from point charges 11.919 -8.089 20.014 24.659
hybrid contribution -0.322 -0.977 0.629 1.205
sum 11.598 -9.066 20.643 25.354
Atomic orbital electron populations
1.21873 0.94519 1.01652 1.01924 1.22184 0.96019 0.96158 0.88098
0.90721 1.22412 0.95365 0.99742 0.96666 0.86506 1.20612 0.83843
0.84165 0.78946 1.90650 1.64464 1.21185 1.68867 1.47501 1.28260
1.20458 1.35598 1.21927 0.98218 0.83032 1.02977 1.21949 0.85956
0.98918 0.91514 1.24368 0.98029 0.95453 0.95746 1.68843 1.18568
1.25970 1.04748 1.22410 0.95436 0.98820 0.94540 1.20732 0.86335
0.85280 0.84014 1.90483 1.19523 1.62959 1.76396 1.42024 1.11653
1.42566 1.26878 1.20481 0.98774 1.24984 1.09325 0.90940 1.27795
0.93589 1.01468 1.01423 1.70978 1.15329 1.33289 1.36246 0.82640
0.75273 0.73778 0.73053 1.19865 1.19819 1.19843 1.24327 1.01458
0.91129 0.96691 1.22504 0.99297 0.97264 0.95957 1.23252 0.91172
0.98918 0.95374 1.64685 1.27627 1.27103 1.06704 1.22555 1.01004
0.95197 0.94433 0.93612 0.91761 0.92126 0.92085 0.89861 0.90469
0.86834 0.89257 0.88214 0.87427 0.89720 0.78283 0.93040 0.88994
0.90786 0.91184 0.88977 0.91929 0.89179 0.91324 0.90352 0.94387
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.81 8.36 71.98 0.60 -2.21 16
2 C 0.08 1.43 3.09 45.06 0.14 1.57 16
3 H 0.07 1.07 7.73 -2.39 -0.02 1.05 16
4 C -0.12 -2.13 2.79 -10.66 -0.03 -2.16 16
5 H 0.12 1.61 6.05 -2.39 -0.01 1.60 16
6 C 0.53 12.65 4.62 87.66 0.41 13.05 16
7 O -0.57 -17.41 14.63 -3.04 -0.04 -17.46 16
8 N -0.59 -13.36 2.42 -821.58 -1.99 -15.35 16
9 C 0.08 1.74 9.05 127.77 1.16 2.90 16
10 C 0.12 2.84 4.68 45.45 0.21 3.06 16
11 C -0.01 -0.14 7.31 83.58 0.61 0.47 16
12 N -0.46 -13.37 4.29 -932.45 -4.00 -17.37 16
13 C 0.02 0.63 5.30 85.56 0.45 1.08 16
14 C 0.45 20.73 7.85 87.66 0.69 21.42 16
15 O -0.61 -32.97 16.01 -3.09 -0.05 -33.02 16
16 N -0.59 -29.62 5.28 -306.98 -1.62 -31.24 16
17 C -0.41 -23.03 9.68 84.04 0.81 -22.22 16
18 H 0.07 4.41 7.16 -2.91 -0.02 4.39 16
19 C -0.04 -2.43 5.50 84.92 0.47 -1.96 16
20 N -0.92 -51.14 13.68 21.66 0.30 -50.84 16
21 Si 1.13 48.32 29.92 68.60 2.05 50.37 16
22 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16
23 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16
24 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16
25 C -0.01 -0.17 6.72 83.58 0.56 0.39 16
26 C -0.11 -1.87 6.55 31.80 0.21 -1.66 16
27 C 0.04 0.55 6.56 86.65 0.57 1.12 16
28 N -0.54 -8.96 5.18 -884.08 -4.58 -13.54 16
29 C 0.02 0.20 9.40 127.69 1.20 1.40 16
30 H 0.04 1.14 7.20 -2.38 -0.02 1.13 16
31 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16
32 H 0.06 1.23 6.27 -2.39 -0.01 1.22 16
33 H 0.06 1.26 7.71 -2.39 -0.02 1.24 16
34 H 0.08 1.38 6.19 -2.39 -0.01 1.36 16
35 H 0.08 2.19 5.50 -2.39 -0.01 2.18 16
36 H 0.11 2.69 7.27 -2.39 -0.02 2.67 16
37 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16
38 H 0.10 1.79 7.91 -2.38 -0.02 1.77 16
39 H 0.11 3.03 8.08 -2.39 -0.02 3.01 16
40 H 0.08 2.31 7.30 -2.39 -0.02 2.29 16
41 H 0.38 17.62 6.73 -92.71 -0.62 17.00 16
42 H 0.26 13.89 6.78 -92.70 -0.63 13.27 16
43 H 0.09 2.16 7.42 -2.39 -0.02 2.14 16
44 H 0.07 2.22 7.34 -2.38 -0.02 2.20 16
45 H 0.07 1.57 6.84 -2.39 -0.02 1.55 16
46 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16
47 H 0.06 0.66 7.96 -2.39 -0.02 0.64 16
48 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16
49 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16
50 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16
51 H 0.04 0.39 8.00 -2.38 -0.02 0.37 16
Total: -1.00 -74.08 394.50 -1.43 -75.51
By element:
Atomic # 1 Polarization: 36.23 SS G_CDS: 0.46 Total: 36.69 kcal
Atomic # 6 Polarization: 8.20 SS G_CDS: 8.06 Total: 16.25 kcal
Atomic # 7 Polarization: -116.45 SS G_CDS: -11.90 Total: -128.35 kcal
Atomic # 8 Polarization: -50.38 SS G_CDS: -0.09 Total: -50.47 kcal
Atomic # 14 Polarization: 48.32 SS G_CDS: 2.05 Total: 50.37 kcal
Total: -74.08 -1.43 -75.51 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001754575824.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 46.770 kcal
(2) G-P(sol) polarization free energy of solvation -74.080 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.310 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.427 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.507 kcal
(6) G-S(sol) free energy of system = (1) + (5) -28.737 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 4.78 seconds