Wall clock time and date at job start Tue Mar 31 2020 22:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47546 * 2 1 4 4 C 1.53002 * 109.46985 * 240.00232 * 2 1 3 5 5 C 1.50700 * 109.47104 * 65.00128 * 4 2 1 6 6 N 1.34778 * 119.99570 * 180.02562 * 5 4 2 7 7 O 1.21277 * 119.99981 * 359.97438 * 5 4 2 8 8 C 1.50697 * 109.47182 * 120.00079 * 2 1 3 9 9 O 1.21282 * 119.99859 * 92.65192 * 8 2 1 10 10 N 1.34773 * 120.00366 * 272.65418 * 8 2 1 11 11 C 1.47081 * 120.88243 * 184.28460 * 10 8 2 12 12 C 1.53237 * 108.51856 * 231.20435 * 11 10 8 13 13 N 1.46902 * 109.34570 * 306.17052 * 12 11 10 14 14 C 1.46895 * 111.00194 * 187.25180 * 13 12 11 15 15 H 1.09001 * 110.64337 * 293.55974 * 14 13 12 16 16 C 1.55162 * 110.71936 * 56.69867 * 14 13 12 17 17 C 1.54905 * 101.58199 * 153.86223 * 16 14 13 18 18 N 1.47424 * 104.83359 * 322.99171 * 17 16 14 19 19 C 1.36945 * 125.64807 * 204.09163 * 18 17 16 20 20 H 1.08002 * 119.99480 * 176.87486 * 19 18 17 21 21 C 1.38805 * 120.00157 * 356.87159 * 19 18 17 22 22 N 1.31620 * 120.00077 * 320.60135 * 21 19 18 23 23 Si 1.86798 * 120.00075 * 140.60142 * 21 19 18 24 24 H 1.48503 * 109.47087 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47195 * 240.00288 * 23 21 19 26 26 H 1.48503 * 109.47271 * 120.00258 * 23 21 19 27 27 C 1.47022 * 108.70322 * 24.35390 * 18 17 16 28 28 C 1.46902 * 111.26398 * 63.10579 * 13 12 11 29 29 C 1.47077 * 120.87949 * 4.30834 * 10 8 2 30 30 H 1.09004 * 109.46902 * 304.47765 * 1 2 3 31 31 H 1.09005 * 109.47199 * 64.46927 * 1 2 3 32 32 H 1.08998 * 109.47496 * 184.46928 * 1 2 3 33 33 H 1.08998 * 109.47000 * 185.00037 * 4 2 1 34 34 H 1.09002 * 109.46987 * 305.00291 * 4 2 1 35 35 H 0.96995 * 120.00682 * 359.97438 * 6 5 4 36 36 H 0.97000 * 119.99688 * 180.02562 * 6 5 4 37 37 H 1.08997 * 109.62621 * 111.49629 * 11 10 8 38 38 H 1.08990 * 109.62889 * 350.91488 * 11 10 8 39 39 H 1.09002 * 109.49396 * 186.20960 * 12 11 10 40 40 H 1.09000 * 109.51531 * 66.14888 * 12 11 10 41 41 H 1.09007 * 111.00122 * 35.78967 * 16 14 13 42 42 H 1.08995 * 111.03914 * 271.95119 * 16 14 13 43 43 H 1.09001 * 110.36886 * 204.15539 * 17 16 14 44 44 H 1.09000 * 110.36689 * 81.82924 * 17 16 14 45 45 H 0.97004 * 119.99589 * 359.32619 * 22 21 19 46 46 H 1.09000 * 109.87865 * 118.13021 * 27 18 17 47 47 H 1.08993 * 109.88343 * 239.29698 * 27 18 17 48 48 H 1.09000 * 109.49506 * 56.85705 * 28 13 12 49 49 H 1.08998 * 109.48719 * 176.94098 * 28 13 12 50 50 H 1.09000 * 109.62861 * 248.50052 * 29 10 8 51 51 H 1.09007 * 109.62783 * 9.08056 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6413 0.0572 -2.4766 6 7 1.9844 -0.3918 -3.7002 7 8 1.0109 1.0870 -2.3633 8 6 2.0323 -0.7104 1.2304 9 8 2.2803 -1.8968 1.1869 10 7 2.2060 -0.0275 2.3792 11 6 2.7830 -0.6790 3.5650 12 6 1.8597 -0.4199 4.7602 13 7 1.6315 1.0250 4.8947 14 6 0.8932 1.3289 6.1277 15 1 -0.1187 0.9267 6.0787 16 6 1.6442 0.7758 7.3678 17 6 1.1452 1.7274 8.4836 18 7 1.0409 3.0473 7.8352 19 6 1.0950 4.2571 8.4747 20 1 1.0592 5.1723 7.9024 21 6 1.1957 4.3070 9.8582 22 7 0.5187 3.4550 10.5985 23 14 2.2922 5.5834 10.6694 24 1 2.9403 6.4154 9.6240 25 1 3.3358 4.8995 11.4745 26 1 1.4725 6.4495 11.5544 27 6 0.8630 2.8496 6.3893 28 6 0.9376 1.5665 3.7186 29 6 1.8231 1.3890 2.4806 30 1 -0.3633 0.5818 0.8472 31 1 -0.3634 0.4429 -0.9274 32 1 -0.3634 -1.0245 0.0801 33 1 3.1262 -0.7994 -1.2056 34 1 1.6052 -1.7198 -1.2953 35 1 2.4882 -1.2157 -3.7909 36 1 1.7281 0.1093 -4.4901 37 1 3.7698 -0.2628 3.7676 38 1 2.8637 -1.7517 3.3904 39 1 2.3258 -0.8007 5.6691 40 1 0.9072 -0.9254 4.6008 41 1 2.7236 0.8568 7.2390 42 1 1.3536 -0.2543 7.5739 43 1 1.8644 1.7625 9.3019 44 1 0.1697 1.4058 8.8482 45 1 -0.0583 2.7985 10.1775 46 1 -0.0950 3.2630 6.0738 47 1 1.6748 3.3334 5.8463 48 1 -0.0020 1.0335 3.5732 49 1 0.7351 2.6265 3.8720 50 1 2.7177 2.0039 2.5791 51 1 1.2694 1.6833 1.5890 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754662644.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:10 Heat of formation + Delta-G solvation = -38.569638 kcal Electronic energy + Delta-G solvation = -30343.783016 eV Core-core repulsion = 26278.752482 eV Total energy + Delta-G solvation = -4065.030534 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.85028 -39.79857 -38.71867 -36.83968 -34.72360 -34.25025 -34.12365 -32.11318 -31.39061 -29.27335 -28.36219 -28.12181 -26.16874 -24.36744 -24.20810 -23.21296 -21.64443 -20.63994 -20.04416 -19.76673 -18.84671 -18.15502 -17.54207 -17.48773 -16.81030 -16.03113 -15.81660 -15.59693 -15.46374 -14.94591 -14.81869 -14.53780 -14.31012 -13.88415 -13.76516 -13.59790 -13.30641 -13.19600 -12.96231 -12.79057 -12.51331 -12.28368 -12.21686 -11.82828 -11.63079 -11.60375 -11.43662 -11.36751 -11.26801 -10.73138 -10.54722 -10.37519 -10.34880 -10.31171 -10.15146 -10.13008 -10.00750 -9.81667 -9.69157 -8.92569 -8.23821 -8.19321 -6.95230 -6.22295 -2.97794 2.19899 2.37123 2.64672 3.16036 3.55182 3.58160 3.73087 3.85120 4.10191 4.33132 4.53939 4.61707 4.64068 4.75828 4.80769 4.96688 5.00965 5.08175 5.17275 5.21493 5.23254 5.26631 5.28252 5.38243 5.45199 5.51965 5.59958 5.62133 5.67751 5.69847 5.72735 5.76433 5.89689 5.97350 6.07530 6.25360 6.29689 6.31722 6.35258 6.54991 6.59397 6.83602 6.96336 7.04637 7.11933 7.15566 7.32044 7.80621 7.83376 7.92103 8.51781 9.00917 9.86734 10.43107 11.17916 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.024993 B = 0.002132 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.030570 B =13130.171560 C =13697.250130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 H 0.102 0.898 4 C -0.126 4.126 5 C 0.519 3.481 6 N -0.857 5.857 7 O -0.539 6.539 8 C 0.521 3.479 9 O -0.548 6.548 10 N -0.609 5.609 11 C 0.117 3.883 12 C 0.041 3.959 13 N -0.525 5.525 14 C 0.073 3.927 15 H 0.044 0.956 16 C -0.126 4.126 17 C 0.144 3.856 18 N -0.602 5.602 19 C -0.352 4.352 20 H 0.070 0.930 21 C -0.020 4.020 22 N -0.903 5.903 23 Si 1.058 2.942 24 H -0.292 1.292 25 H -0.290 1.290 26 H -0.296 1.296 27 C 0.151 3.849 28 C 0.040 3.960 29 C 0.108 3.892 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.057 0.943 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.402 0.598 36 H 0.401 0.599 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.034 0.966 41 H 0.076 0.924 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.018 0.982 45 H 0.269 0.731 46 H 0.016 0.984 47 H 0.039 0.961 48 H 0.036 0.964 49 H 0.093 0.907 50 H 0.081 0.919 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.847 -11.528 -26.263 28.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 H 0.120 0.880 4 C -0.166 4.166 5 C 0.304 3.696 6 N -0.421 5.421 7 O -0.416 6.416 8 C 0.310 3.690 9 O -0.426 6.426 10 N -0.342 5.342 11 C -0.006 4.006 12 C -0.087 4.087 13 N -0.250 5.250 14 C -0.036 4.036 15 H 0.062 0.938 16 C -0.165 4.165 17 C 0.018 3.982 18 N -0.329 5.329 19 C -0.478 4.478 20 H 0.088 0.912 21 C -0.222 4.222 22 N -0.543 5.543 23 Si 0.888 3.112 24 H -0.218 1.218 25 H -0.217 1.217 26 H -0.224 1.224 27 C 0.024 3.976 28 C -0.089 4.089 29 C -0.015 4.015 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.076 0.924 33 H 0.116 0.884 34 H 0.124 0.876 35 H 0.231 0.769 36 H 0.232 0.768 37 H 0.095 0.905 38 H 0.112 0.888 39 H 0.109 0.891 40 H 0.053 0.947 41 H 0.094 0.906 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.036 0.964 45 H 0.080 0.920 46 H 0.033 0.967 47 H 0.057 0.943 48 H 0.054 0.946 49 H 0.111 0.889 50 H 0.099 0.901 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.578 -10.606 -24.473 27.062 hybrid contribution -1.283 -1.087 -1.859 2.507 sum 3.295 -11.693 -26.332 29.000 Atomic orbital electron populations 1.21891 0.91892 1.02493 1.04256 1.21026 0.98670 1.00794 0.91178 0.88010 1.21477 1.03438 1.00569 0.91112 1.20646 0.78399 0.85299 0.85252 1.43890 1.60263 1.29611 1.08312 1.90738 1.39567 1.24547 1.86704 1.20582 0.77039 0.87062 0.84351 1.90671 1.51948 1.15196 1.84766 1.48195 1.62237 1.12050 1.11734 1.21748 0.96715 0.98980 0.83137 1.22467 0.98710 0.88824 0.98732 1.61983 1.48561 1.12650 1.01800 1.22674 0.94475 0.97924 0.88482 0.93846 1.22889 1.00601 0.98043 0.94927 1.21504 0.97826 0.84879 0.94017 1.44545 1.85965 1.01759 1.00673 1.19640 1.52784 0.83412 0.91980 0.91182 1.25615 1.00406 1.03781 0.92448 1.70797 1.23790 1.21699 1.38020 0.83653 0.77072 0.75351 0.75116 1.21806 1.21684 1.22401 1.21183 0.97758 0.91222 0.87404 1.22471 0.94825 1.01626 0.89983 1.22002 0.99909 0.81143 0.98459 0.91992 0.89516 0.92439 0.88358 0.87591 0.76926 0.76796 0.90516 0.88824 0.89061 0.94739 0.90568 0.92266 0.92557 0.96406 0.92034 0.96659 0.94346 0.94584 0.88861 0.90096 0.89042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 8.79 37.16 0.33 -0.99 16 2 C -0.09 -0.84 1.51 -91.77 -0.14 -0.98 16 3 H 0.10 0.88 6.45 -51.93 -0.33 0.54 16 4 C -0.13 -0.88 4.65 -27.88 -0.13 -1.01 16 5 C 0.52 3.87 7.78 -10.98 -0.09 3.78 16 6 N -0.86 -3.28 8.87 31.22 0.28 -3.00 16 7 O -0.54 -6.03 14.82 5.56 0.08 -5.94 16 8 C 0.52 5.83 6.79 -10.99 -0.07 5.75 16 9 O -0.55 -7.59 15.68 5.56 0.09 -7.50 16 10 N -0.61 -6.67 3.01 -172.47 -0.52 -7.19 16 11 C 0.12 1.31 6.61 -3.60 -0.02 1.29 16 12 C 0.04 0.51 5.43 -3.70 -0.02 0.49 16 13 N -0.52 -7.34 4.45 -224.14 -1.00 -8.34 16 14 C 0.07 1.23 2.64 -65.87 -0.17 1.06 16 15 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 16 C -0.13 -2.25 5.18 -24.58 -0.13 -2.38 16 17 C 0.14 3.35 5.29 -2.53 -0.01 3.33 16 18 N -0.60 -15.41 3.38 -170.07 -0.57 -15.98 16 19 C -0.35 -10.06 9.95 -15.06 -0.15 -10.21 16 20 H 0.07 2.02 8.05 -52.49 -0.42 1.59 16 21 C -0.02 -0.57 4.86 -17.43 -0.08 -0.66 16 22 N -0.90 -27.37 12.84 55.49 0.71 -26.65 16 23 Si 1.06 25.66 30.05 -169.99 -5.11 20.56 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.30 -7.12 7.11 56.52 0.40 -6.72 16 27 C 0.15 3.14 5.80 -3.06 -0.02 3.12 16 28 C 0.04 0.48 5.50 -3.70 -0.02 0.46 16 29 C 0.11 1.07 6.27 -3.60 -0.02 1.05 16 30 H 0.06 0.54 7.30 -51.93 -0.38 0.16 16 31 H 0.09 0.83 5.88 -51.93 -0.31 0.52 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.11 0.71 8.02 -51.93 -0.42 0.29 16 35 H 0.40 0.45 8.83 -40.82 -0.36 0.09 16 36 H 0.40 1.25 8.93 -40.82 -0.36 0.88 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.09 1.08 7.04 -51.93 -0.37 0.71 16 39 H 0.09 1.09 6.67 -51.93 -0.35 0.75 16 40 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 42 H 0.06 0.92 7.94 -51.93 -0.41 0.50 16 43 H 0.06 1.44 7.48 -51.93 -0.39 1.06 16 44 H 0.02 0.44 7.25 -51.93 -0.38 0.07 16 45 H 0.27 8.16 6.40 -40.82 -0.26 7.90 16 46 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.04 0.81 7.93 -51.93 -0.41 0.40 16 48 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 49 H 0.09 1.15 7.05 -51.93 -0.37 0.78 16 50 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 51 H 0.09 0.76 4.93 -51.93 -0.26 0.50 16 LS Contribution 390.91 15.07 5.89 5.89 Total: -1.00 -35.41 390.91 -9.27 -44.69 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -8.37 Total: -0.64 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -0.76 Total: 4.11 kcal Atomic # 7 Polarization: -60.06 SS G_CDS: -1.10 Total: -61.16 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.17 Total: -13.44 kcal Atomic # 14 Polarization: 25.66 SS G_CDS: -5.11 Total: 20.56 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.41 -9.27 -44.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754662644.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.116 kcal (2) G-P(sol) polarization free energy of solvation -35.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds