Wall clock time and date at job start Tue Mar 31 2020 22:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47546 * 2 1 4 4 C 1.53002 * 109.46985 * 240.00232 * 2 1 3 5 5 C 1.50700 * 109.47104 * 65.00128 * 4 2 1 6 6 N 1.34778 * 119.99570 * 180.02562 * 5 4 2 7 7 O 1.21277 * 119.99981 * 359.97438 * 5 4 2 8 8 C 1.50697 * 109.47182 * 120.00079 * 2 1 3 9 9 O 1.21282 * 119.99859 * 92.65192 * 8 2 1 10 10 N 1.34773 * 120.00366 * 272.65418 * 8 2 1 11 11 C 1.47081 * 120.88243 * 184.28460 * 10 8 2 12 12 C 1.53237 * 108.51856 * 231.20435 * 11 10 8 13 13 N 1.46902 * 109.34570 * 306.17052 * 12 11 10 14 14 C 1.46895 * 111.00194 * 187.25180 * 13 12 11 15 15 H 1.09001 * 110.64337 * 293.55974 * 14 13 12 16 16 C 1.55162 * 110.71936 * 56.69867 * 14 13 12 17 17 C 1.54905 * 101.58199 * 153.86223 * 16 14 13 18 18 N 1.47424 * 104.83359 * 322.99171 * 17 16 14 19 19 C 1.36945 * 125.64807 * 204.09163 * 18 17 16 20 20 H 1.08002 * 119.99480 * 176.87486 * 19 18 17 21 21 C 1.38805 * 120.00157 * 356.87159 * 19 18 17 22 22 N 1.31620 * 120.00077 * 320.60135 * 21 19 18 23 23 Si 1.86798 * 120.00075 * 140.60142 * 21 19 18 24 24 H 1.48503 * 109.47087 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47195 * 240.00288 * 23 21 19 26 26 H 1.48503 * 109.47271 * 120.00258 * 23 21 19 27 27 C 1.47022 * 108.70322 * 24.35390 * 18 17 16 28 28 C 1.46902 * 111.26398 * 63.10579 * 13 12 11 29 29 C 1.47077 * 120.87949 * 4.30834 * 10 8 2 30 30 H 1.09004 * 109.46902 * 304.47765 * 1 2 3 31 31 H 1.09005 * 109.47199 * 64.46927 * 1 2 3 32 32 H 1.08998 * 109.47496 * 184.46928 * 1 2 3 33 33 H 1.08998 * 109.47000 * 185.00037 * 4 2 1 34 34 H 1.09002 * 109.46987 * 305.00291 * 4 2 1 35 35 H 0.96995 * 120.00682 * 359.97438 * 6 5 4 36 36 H 0.97000 * 119.99688 * 180.02562 * 6 5 4 37 37 H 1.08997 * 109.62621 * 111.49629 * 11 10 8 38 38 H 1.08990 * 109.62889 * 350.91488 * 11 10 8 39 39 H 1.09002 * 109.49396 * 186.20960 * 12 11 10 40 40 H 1.09000 * 109.51531 * 66.14888 * 12 11 10 41 41 H 1.09007 * 111.00122 * 35.78967 * 16 14 13 42 42 H 1.08995 * 111.03914 * 271.95119 * 16 14 13 43 43 H 1.09001 * 110.36886 * 204.15539 * 17 16 14 44 44 H 1.09000 * 110.36689 * 81.82924 * 17 16 14 45 45 H 0.97004 * 119.99589 * 359.32619 * 22 21 19 46 46 H 1.09000 * 109.87865 * 118.13021 * 27 18 17 47 47 H 1.08993 * 109.88343 * 239.29698 * 27 18 17 48 48 H 1.09000 * 109.49506 * 56.85705 * 28 13 12 49 49 H 1.08998 * 109.48719 * 176.94098 * 28 13 12 50 50 H 1.09000 * 109.62861 * 248.50052 * 29 10 8 51 51 H 1.09007 * 109.62783 * 9.08056 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6413 0.0572 -2.4766 6 7 1.9844 -0.3918 -3.7002 7 8 1.0109 1.0870 -2.3633 8 6 2.0323 -0.7104 1.2304 9 8 2.2803 -1.8968 1.1869 10 7 2.2060 -0.0275 2.3792 11 6 2.7830 -0.6790 3.5650 12 6 1.8597 -0.4199 4.7602 13 7 1.6315 1.0250 4.8947 14 6 0.8932 1.3289 6.1277 15 1 -0.1187 0.9267 6.0787 16 6 1.6442 0.7758 7.3678 17 6 1.1452 1.7274 8.4836 18 7 1.0409 3.0473 7.8352 19 6 1.0950 4.2571 8.4747 20 1 1.0592 5.1723 7.9024 21 6 1.1957 4.3070 9.8582 22 7 0.5187 3.4550 10.5985 23 14 2.2922 5.5834 10.6694 24 1 2.9403 6.4154 9.6240 25 1 3.3358 4.8995 11.4745 26 1 1.4725 6.4495 11.5544 27 6 0.8630 2.8496 6.3893 28 6 0.9376 1.5665 3.7186 29 6 1.8231 1.3890 2.4806 30 1 -0.3633 0.5818 0.8472 31 1 -0.3634 0.4429 -0.9274 32 1 -0.3634 -1.0245 0.0801 33 1 3.1262 -0.7994 -1.2056 34 1 1.6052 -1.7198 -1.2953 35 1 2.4882 -1.2157 -3.7909 36 1 1.7281 0.1093 -4.4901 37 1 3.7698 -0.2628 3.7676 38 1 2.8637 -1.7517 3.3904 39 1 2.3258 -0.8007 5.6691 40 1 0.9072 -0.9254 4.6008 41 1 2.7236 0.8568 7.2390 42 1 1.3536 -0.2543 7.5739 43 1 1.8644 1.7625 9.3019 44 1 0.1697 1.4058 8.8482 45 1 -0.0583 2.7985 10.1775 46 1 -0.0950 3.2630 6.0738 47 1 1.6748 3.3334 5.8463 48 1 -0.0020 1.0335 3.5732 49 1 0.7351 2.6265 3.8720 50 1 2.7177 2.0039 2.5791 51 1 1.2694 1.6833 1.5890 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754662644.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:09 Heat of formation + Delta-G solvation = -65.797970 kcal Electronic energy + Delta-G solvation = -30344.963725 eV Core-core repulsion = 26278.752482 eV Total energy + Delta-G solvation = -4066.211243 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.68620 -40.57466 -39.91459 -38.22017 -35.81132 -35.25369 -34.62465 -33.90645 -32.34097 -31.00606 -29.61816 -28.91599 -27.52680 -25.96432 -25.27313 -24.28725 -22.52438 -21.90202 -21.41485 -21.02306 -19.70007 -19.59751 -18.86860 -18.01693 -17.61174 -17.08156 -16.67399 -16.56456 -16.42848 -16.22335 -15.99365 -15.70946 -15.47752 -15.21835 -14.95681 -14.83379 -14.68022 -14.45688 -14.05915 -13.85789 -13.66638 -13.40894 -13.30378 -13.00402 -12.70377 -12.63915 -12.61569 -12.37875 -12.31289 -12.23550 -12.08661 -11.91473 -11.86967 -11.83393 -11.73777 -11.63324 -11.03913 -10.74125 -10.54373 -10.35981 -9.86984 -9.33688 -9.04040 -8.49742 -5.19810 1.50776 1.58175 1.64987 1.65168 1.83631 1.84248 2.56767 2.65339 2.77205 3.09666 3.40363 3.54961 3.59655 3.66013 3.85337 3.90720 3.94319 4.00610 4.12964 4.16491 4.20122 4.24870 4.33764 4.36602 4.42368 4.50983 4.59502 4.63050 4.65856 4.69794 4.81125 4.81639 4.86991 4.89611 4.91033 4.99710 5.00333 5.04269 5.09651 5.26070 5.29786 5.39379 5.69102 5.94039 5.96987 6.02522 6.29094 6.33963 6.47371 6.85991 7.05326 7.37100 7.73151 8.31883 8.91551 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.024993 B = 0.002132 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.030570 B =13130.171560 C =13697.250130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.092 4.092 3 H 0.106 0.894 4 C -0.121 4.121 5 C 0.519 3.481 6 N -0.839 5.839 7 O -0.581 6.581 8 C 0.523 3.477 9 O -0.575 6.575 10 N -0.611 5.611 11 C 0.121 3.879 12 C 0.045 3.955 13 N -0.528 5.528 14 C 0.091 3.909 15 H 0.045 0.955 16 C -0.107 4.107 17 C 0.145 3.855 18 N -0.625 5.625 19 C -0.362 4.362 20 H 0.062 0.938 21 C -0.072 4.072 22 N -0.929 5.929 23 Si 1.112 2.888 24 H -0.274 1.274 25 H -0.286 1.286 26 H -0.291 1.291 27 C 0.150 3.850 28 C 0.039 3.961 29 C 0.115 3.885 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.417 0.583 36 H 0.408 0.592 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.032 0.968 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.024 0.976 44 H 0.000 1.000 45 H 0.255 0.745 46 H 0.010 0.990 47 H 0.039 0.961 48 H 0.037 0.963 49 H 0.089 0.911 50 H 0.086 0.914 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.065 -12.089 -28.206 31.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.113 4.113 3 H 0.124 0.876 4 C -0.162 4.162 5 C 0.304 3.696 6 N -0.403 5.403 7 O -0.461 6.461 8 C 0.312 3.688 9 O -0.455 6.455 10 N -0.343 5.343 11 C -0.002 4.002 12 C -0.083 4.083 13 N -0.253 5.253 14 C -0.018 4.018 15 H 0.063 0.937 16 C -0.146 4.146 17 C 0.019 3.981 18 N -0.353 5.353 19 C -0.490 4.490 20 H 0.080 0.920 21 C -0.269 4.269 22 N -0.571 5.571 23 Si 0.937 3.063 24 H -0.199 1.199 25 H -0.213 1.213 26 H -0.218 1.218 27 C 0.024 3.976 28 C -0.090 4.090 29 C -0.008 4.008 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.249 0.751 36 H 0.239 0.761 37 H 0.101 0.899 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.050 0.950 41 H 0.098 0.902 42 H 0.107 0.893 43 H 0.043 0.957 44 H 0.018 0.982 45 H 0.065 0.935 46 H 0.028 0.972 47 H 0.057 0.943 48 H 0.055 0.945 49 H 0.107 0.893 50 H 0.104 0.896 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.813 -11.198 -26.483 29.335 hybrid contribution -1.694 -0.941 -1.342 2.357 sum 4.119 -12.138 -27.825 30.636 Atomic orbital electron populations 1.21823 0.91955 1.02211 1.03957 1.21021 0.98488 1.00944 0.90875 0.87573 1.21449 1.04156 1.00375 0.90182 1.20691 0.77954 0.84731 0.86173 1.43743 1.59150 1.29906 1.07465 1.90725 1.41684 1.26352 1.87330 1.20926 0.76334 0.86711 0.84800 1.90659 1.53191 1.16423 1.85220 1.48277 1.61956 1.12381 1.11698 1.21686 0.96668 0.99031 0.82800 1.22486 0.98867 0.87387 0.99575 1.61938 1.48126 1.14034 1.01192 1.22351 0.94849 0.94821 0.89735 0.93704 1.22742 1.00699 0.98179 0.92948 1.21450 0.96233 0.85425 0.94998 1.44839 1.85985 1.01737 1.02755 1.19865 1.52167 0.84563 0.92376 0.92007 1.26984 1.00885 1.05583 0.93485 1.70922 1.25268 1.22809 1.38088 0.82927 0.75232 0.73392 0.74749 1.19938 1.21277 1.21828 1.21278 0.97188 0.94241 0.84845 1.22532 0.95260 1.01250 0.89951 1.22011 0.99964 0.80686 0.98116 0.91948 0.90052 0.92736 0.87138 0.87116 0.75147 0.76090 0.89950 0.88944 0.88489 0.95002 0.90183 0.89261 0.95726 0.98200 0.93527 0.97235 0.94334 0.94487 0.89289 0.89556 0.87194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 8.79 71.98 0.63 -1.70 16 2 C -0.09 -1.46 1.51 -11.54 -0.02 -1.47 16 3 H 0.11 1.61 6.45 -2.39 -0.02 1.60 16 4 C -0.12 -1.47 4.65 29.85 0.14 -1.33 16 5 C 0.52 6.86 7.78 87.66 0.68 7.54 16 6 N -0.84 -4.65 8.87 -173.53 -1.54 -6.19 16 7 O -0.58 -12.36 14.82 -3.02 -0.04 -12.40 16 8 C 0.52 10.69 6.79 87.66 0.59 11.29 16 9 O -0.58 -14.96 15.68 -3.03 -0.05 -15.01 16 10 N -0.61 -12.06 3.01 -817.96 -2.46 -14.52 16 11 C 0.12 2.45 6.61 86.35 0.57 3.03 16 12 C 0.05 1.00 5.43 86.38 0.47 1.47 16 13 N -0.53 -13.74 4.45 -863.05 -3.84 -17.58 16 14 C 0.09 2.98 2.64 46.11 0.12 3.10 16 15 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 16 C -0.11 -3.70 5.18 31.99 0.17 -3.53 16 17 C 0.14 6.88 5.29 86.85 0.46 7.34 16 18 N -0.63 -32.54 3.38 -691.98 -2.34 -34.88 16 19 C -0.36 -21.08 9.95 84.03 0.84 -20.24 16 20 H 0.06 3.61 8.05 -2.91 -0.02 3.59 16 21 C -0.07 -4.22 4.86 84.86 0.41 -3.81 16 22 N -0.93 -57.75 12.84 21.65 0.28 -57.47 16 23 Si 1.11 52.16 30.05 68.60 2.06 54.22 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 25 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 26 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 27 C 0.15 6.23 5.80 86.73 0.50 6.73 16 28 C 0.04 0.86 5.50 86.38 0.48 1.33 16 29 C 0.11 2.02 6.27 86.35 0.54 2.56 16 30 H 0.06 1.00 7.30 -2.39 -0.02 0.98 16 31 H 0.08 1.48 5.88 -2.38 -0.01 1.47 16 32 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.11 1.26 8.02 -2.39 -0.02 1.24 16 35 H 0.42 -0.12 8.83 -92.71 -0.82 -0.94 16 36 H 0.41 1.73 8.93 -92.71 -0.83 0.90 16 37 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.09 1.95 7.04 -2.39 -0.02 1.94 16 39 H 0.10 2.06 6.67 -2.39 -0.02 2.04 16 40 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.08 2.73 8.14 -2.38 -0.02 2.71 16 42 H 0.09 2.56 7.94 -2.39 -0.02 2.54 16 43 H 0.02 1.30 7.48 -2.39 -0.02 1.28 16 44 H 0.00 0.01 7.25 -2.39 -0.02 0.00 16 45 H 0.25 16.08 6.40 -92.71 -0.59 15.49 16 46 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 47 H 0.04 1.61 7.93 -2.39 -0.02 1.59 16 48 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 49 H 0.09 2.07 7.05 -2.39 -0.02 2.05 16 50 H 0.09 1.48 8.14 -2.39 -0.02 1.47 16 51 H 0.11 1.56 4.93 -2.38 -0.01 1.55 16 Total: -1.00 -77.60 390.91 -1.87 -79.46 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -0.52 Total: 12.07 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: 6.59 Total: 12.30 kcal Atomic # 7 Polarization: -120.74 SS G_CDS: -9.90 Total: -130.65 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.09 Total: -27.41 kcal Atomic # 14 Polarization: 52.16 SS G_CDS: 2.06 Total: 54.22 kcal Total: -77.60 -1.87 -79.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754662644.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.665 kcal (2) G-P(sol) polarization free energy of solvation -77.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds