Wall clock time and date at job start Tue Mar 31 2020 22:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47238 * 2 1 4 4 C 1.52997 * 109.47334 * 120.00488 * 2 1 3 5 5 C 1.50700 * 109.46772 * 294.99528 * 4 2 1 6 6 N 1.34779 * 119.99941 * 179.97438 * 5 4 2 7 7 O 1.21281 * 120.00397 * 0.02562 * 5 4 2 8 8 C 1.50708 * 109.46756 * 240.00196 * 2 1 3 9 9 O 1.21282 * 119.99818 * 264.53644 * 8 2 1 10 10 N 1.34777 * 119.99795 * 84.54124 * 8 2 1 11 11 C 1.47078 * 120.88256 * 175.44009 * 10 8 2 12 12 C 1.53236 * 108.51977 * 231.16239 * 11 10 8 13 13 N 1.46905 * 109.33855 * 306.16390 * 12 11 10 14 14 C 1.46895 * 110.99902 * 187.25868 * 13 12 11 15 15 H 1.09001 * 110.89105 * 51.11640 * 14 13 12 16 16 C 1.55157 * 111.00467 * 175.00073 * 14 13 12 17 17 C 1.54325 * 102.94138 * 153.57187 * 16 14 13 18 18 N 1.47016 * 107.27303 * 337.80943 * 17 16 14 19 19 C 1.36942 * 125.64865 * 178.98636 * 18 17 16 20 20 H 1.07995 * 120.00040 * 179.97438 * 19 18 17 21 21 C 1.38811 * 119.99746 * 359.97438 * 19 18 17 22 22 N 1.31623 * 120.00438 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99789 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47151 * 0.02562 * 23 21 19 25 25 H 1.48510 * 109.46940 * 120.00074 * 23 21 19 26 26 H 1.48504 * 109.47118 * 239.99529 * 23 21 19 27 27 C 1.47424 * 108.70565 * 358.93666 * 18 17 16 28 28 C 1.46891 * 111.26549 * 63.10648 * 13 12 11 29 29 C 1.47078 * 120.88162 * 355.41007 * 10 8 2 30 30 H 1.09007 * 109.46781 * 186.36571 * 1 2 3 31 31 H 1.09006 * 109.46893 * 306.35964 * 1 2 3 32 32 H 1.08996 * 109.47366 * 66.36205 * 1 2 3 33 33 H 1.08998 * 109.47595 * 54.99520 * 4 2 1 34 34 H 1.09004 * 109.47135 * 174.99921 * 4 2 1 35 35 H 0.97008 * 119.99690 * 0.02562 * 6 5 4 36 36 H 0.97000 * 120.00283 * 180.02562 * 6 5 4 37 37 H 1.08994 * 109.63181 * 111.44416 * 11 10 8 38 38 H 1.09009 * 109.62577 * 350.86953 * 11 10 8 39 39 H 1.09007 * 109.48838 * 186.20767 * 12 11 10 40 40 H 1.08996 * 109.51822 * 66.14246 * 12 11 10 41 41 H 1.08999 * 110.71999 * 271.94013 * 16 14 13 42 42 H 1.09006 * 110.71597 * 35.21143 * 16 14 13 43 43 H 1.08999 * 109.88123 * 97.22991 * 17 16 14 44 44 H 1.09004 * 109.87871 * 218.38948 * 17 16 14 45 45 H 0.96992 * 120.00239 * 180.02562 * 22 21 19 46 46 H 1.08996 * 110.36777 * 265.29429 * 27 18 17 47 47 H 1.08997 * 110.36648 * 142.96803 * 27 18 17 48 48 H 1.09001 * 109.49809 * 56.85590 * 28 13 12 49 49 H 1.09005 * 109.49453 * 176.93561 * 28 13 12 50 50 H 1.09006 * 109.63228 * 248.54871 * 29 10 8 51 51 H 1.08997 * 109.62776 * 9.12932 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6415 0.0570 2.4765 6 7 1.9846 -0.3920 3.7001 7 8 1.0111 1.0869 2.3633 8 6 2.0323 -0.7104 -1.2306 9 8 2.3287 -1.8851 -1.1741 10 7 2.1522 -0.0403 -2.3938 11 6 2.7331 -0.6861 -3.5807 12 6 3.8334 0.2223 -4.1395 13 7 3.2852 1.5658 -4.3691 14 6 4.2579 2.4196 -5.0638 15 1 4.6433 1.9242 -5.9550 16 6 3.6365 3.7965 -5.4177 17 6 4.8664 4.7270 -5.4724 18 7 5.9289 4.0933 -4.6782 19 6 7.1907 4.5916 -4.4913 20 1 7.9019 4.0481 -3.8870 21 6 7.5556 5.7952 -5.0787 22 7 6.6887 6.4579 -5.8148 23 14 9.2766 6.4752 -4.8233 24 1 10.0525 5.5476 -3.9615 25 1 9.9544 6.6131 -6.1374 26 1 9.1911 7.8054 -4.1685 27 6 5.4107 2.8333 -4.1151 28 6 2.8457 2.1840 -3.1112 29 6 1.7049 1.3560 -2.5101 30 1 -0.3633 -1.0214 0.1140 31 1 -0.3633 0.6093 0.8276 32 1 -0.3634 0.4120 -0.9414 33 1 1.6054 -1.7199 1.2951 34 1 3.1264 -0.7995 1.2054 35 1 2.4885 -1.2160 3.7906 36 1 1.7278 0.1087 4.4901 37 1 1.9593 -0.8305 -4.3346 38 1 3.1602 -1.6493 -3.3012 39 1 4.1995 -0.1870 -5.0811 40 1 4.6544 0.2817 -3.4250 41 1 3.1389 3.7574 -6.3867 42 1 2.9438 4.1183 -4.6399 43 1 5.1958 4.8456 -6.5047 44 1 4.6152 5.6988 -5.0474 45 1 6.9439 7.2987 -6.2255 46 1 5.0318 2.9961 -3.1062 47 1 6.1899 2.0712 -4.1103 48 1 3.6801 2.2161 -2.4106 49 1 2.4955 3.1975 -3.3069 50 1 0.8323 1.4080 -3.1613 51 1 1.4522 1.7430 -1.5230 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754662646.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:24 Heat of formation + Delta-G solvation = -32.583434 kcal Electronic energy + Delta-G solvation = -30680.514050 eV Core-core repulsion = 26615.743097 eV Total energy + Delta-G solvation = -4064.770953 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 2.77 seconds Orbital eigenvalues (eV) -40.77455 -39.73301 -38.74785 -36.58536 -34.62688 -34.07441 -34.01502 -31.96854 -31.16448 -29.29307 -28.38201 -27.83916 -25.99750 -24.63802 -23.89430 -23.61379 -21.62333 -20.67423 -20.00125 -19.57261 -18.58337 -17.96605 -17.35747 -16.93207 -16.70596 -16.13460 -15.70935 -15.50897 -15.26171 -14.91549 -14.56264 -14.46090 -14.33786 -13.94933 -13.91514 -13.52952 -13.08740 -12.99827 -12.63796 -12.59296 -12.43202 -12.22105 -12.02557 -11.80893 -11.59688 -11.54412 -11.24906 -11.16071 -11.06649 -10.85225 -10.81136 -10.61751 -10.27695 -10.08716 -10.05686 -10.04012 -9.74886 -9.73772 -9.69478 -8.83604 -8.61876 -8.05232 -6.82439 -5.72819 -3.06543 2.29978 2.46207 2.73966 3.25381 3.38256 3.43789 3.46243 3.98278 4.19049 4.42506 4.49134 4.63610 4.71591 4.83213 4.94280 5.07550 5.10873 5.20562 5.29339 5.31905 5.34283 5.41070 5.48208 5.50593 5.57662 5.61419 5.65845 5.73912 5.76863 5.80194 5.82438 5.95454 6.01067 6.06860 6.26768 6.35008 6.41061 6.41905 6.50410 6.62501 6.70463 6.93062 7.20501 7.25809 7.35933 7.54910 7.62166 7.81755 7.90373 8.00631 8.24443 9.20594 9.80637 10.46311 11.38675 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013674 B = 0.002611 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.254074 B =10720.215963 C =11764.771999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 H 0.103 0.897 4 C -0.125 4.125 5 C 0.519 3.481 6 N -0.857 5.857 7 O -0.539 6.539 8 C 0.522 3.478 9 O -0.549 6.549 10 N -0.608 5.608 11 C 0.118 3.882 12 C 0.040 3.960 13 N -0.525 5.525 14 C 0.069 3.931 15 H 0.089 0.911 16 C -0.135 4.135 17 C 0.177 3.823 18 N -0.603 5.603 19 C -0.228 4.228 20 H 0.076 0.924 21 C -0.008 4.008 22 N -0.921 5.921 23 Si 0.911 3.089 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.290 1.290 27 C 0.107 3.893 28 C 0.031 3.969 29 C 0.108 3.892 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.105 0.895 34 H 0.098 0.902 35 H 0.402 0.598 36 H 0.401 0.599 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.040 0.960 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.047 0.953 44 H 0.042 0.958 45 H 0.252 0.748 46 H 0.021 0.979 47 H 0.032 0.968 48 H 0.048 0.952 49 H 0.095 0.905 50 H 0.078 0.922 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.189 -15.894 12.601 24.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 H 0.121 0.879 4 C -0.166 4.166 5 C 0.304 3.696 6 N -0.421 5.421 7 O -0.416 6.416 8 C 0.310 3.690 9 O -0.427 6.427 10 N -0.341 5.341 11 C -0.004 4.004 12 C -0.089 4.089 13 N -0.249 5.249 14 C -0.039 4.039 15 H 0.107 0.893 16 C -0.174 4.174 17 C 0.052 3.948 18 N -0.329 5.329 19 C -0.357 4.357 20 H 0.094 0.906 21 C -0.204 4.204 22 N -0.568 5.568 23 Si 0.742 3.258 24 H -0.206 1.206 25 H -0.217 1.217 26 H -0.217 1.217 27 C -0.021 4.021 28 C -0.097 4.097 29 C -0.015 4.015 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.079 0.921 33 H 0.123 0.877 34 H 0.117 0.883 35 H 0.231 0.769 36 H 0.232 0.768 37 H 0.092 0.908 38 H 0.110 0.890 39 H 0.105 0.895 40 H 0.058 0.942 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.038 0.962 47 H 0.051 0.949 48 H 0.066 0.934 49 H 0.113 0.887 50 H 0.097 0.903 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.722 -15.747 11.973 24.075 hybrid contribution 1.937 0.404 0.945 2.193 sum -11.785 -15.343 12.918 23.263 Atomic orbital electron populations 1.21880 0.91912 1.02847 1.03785 1.21036 0.98645 1.00899 0.91206 0.87873 1.21488 1.03556 1.00420 0.91119 1.20648 0.78388 0.85297 0.85245 1.43887 1.60267 1.29630 1.08315 1.90730 1.39645 1.24496 1.86705 1.20572 0.77264 0.86912 0.84264 1.90666 1.50949 1.15923 1.85164 1.48177 1.61368 1.13773 1.10797 1.21726 0.96090 0.96352 0.86272 1.22454 0.95597 0.89983 1.00821 1.62157 1.39205 1.02123 1.21372 1.22983 0.90899 0.93316 0.96745 0.89327 1.22990 0.99281 0.94553 1.00568 1.21178 0.84092 0.93136 0.96401 1.44390 1.10594 1.20259 1.57682 1.19087 0.87362 1.02929 1.26308 0.90597 1.24801 0.98218 0.97513 0.99881 1.69973 1.33305 1.16570 1.36996 0.86053 0.83693 0.78737 0.77331 1.20563 1.21713 1.21714 1.22167 0.94604 0.89934 0.95350 1.22606 0.97044 0.98867 0.91231 1.22041 0.97589 0.80029 1.01839 0.92452 0.89485 0.92059 0.87658 0.88337 0.76949 0.76815 0.90803 0.88983 0.89546 0.94196 0.91810 0.92067 0.93524 0.93936 0.93780 0.96191 0.94931 0.93434 0.88664 0.90337 0.89104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 8.64 37.16 0.32 -1.00 16 2 C -0.10 -0.94 1.52 -91.77 -0.14 -1.07 16 3 H 0.10 1.04 6.28 -51.93 -0.33 0.71 16 4 C -0.13 -1.03 4.61 -27.88 -0.13 -1.16 16 5 C 0.52 4.48 7.85 -10.98 -0.09 4.39 16 6 N -0.86 -4.31 8.87 31.22 0.28 -4.03 16 7 O -0.54 -6.61 14.81 5.56 0.08 -6.53 16 8 C 0.52 6.20 6.81 -10.98 -0.07 6.12 16 9 O -0.55 -7.93 15.66 5.56 0.09 -7.85 16 10 N -0.61 -6.96 3.01 -172.46 -0.52 -7.48 16 11 C 0.12 1.35 6.58 -3.60 -0.02 1.32 16 12 C 0.04 0.51 5.39 -3.70 -0.02 0.49 16 13 N -0.52 -7.28 4.66 -223.78 -1.04 -8.33 16 14 C 0.07 1.18 3.11 -65.56 -0.20 0.98 16 15 H 0.09 1.55 8.05 -51.93 -0.42 1.13 16 16 C -0.14 -2.46 6.46 -24.90 -0.16 -2.62 16 17 C 0.18 4.24 5.37 -3.07 -0.02 4.23 16 18 N -0.60 -15.35 3.39 -170.07 -0.58 -15.93 16 19 C -0.23 -6.41 10.28 -15.06 -0.15 -6.56 16 20 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 21 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 22 N -0.92 -27.05 10.31 55.49 0.57 -26.47 16 23 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 C 0.11 2.20 6.04 -2.53 -0.02 2.19 16 28 C 0.03 0.40 4.73 -3.71 -0.02 0.38 16 29 C 0.11 1.12 5.94 -3.60 -0.02 1.10 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.09 0.86 6.09 -51.93 -0.32 0.54 16 32 H 0.06 0.51 7.47 -51.93 -0.39 0.13 16 33 H 0.11 0.78 8.03 -51.93 -0.42 0.37 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.40 0.93 8.83 -40.82 -0.36 0.57 16 36 H 0.40 1.71 8.93 -40.82 -0.36 1.34 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 1.09 7.09 -51.92 -0.37 0.72 16 39 H 0.09 1.01 8.04 -51.93 -0.42 0.59 16 40 H 0.04 0.56 7.82 -51.93 -0.41 0.15 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.06 1.04 5.80 -51.93 -0.30 0.74 16 43 H 0.05 1.24 7.38 -51.93 -0.38 0.86 16 44 H 0.04 1.13 7.50 -51.93 -0.39 0.74 16 45 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 46 H 0.02 0.42 5.63 -51.93 -0.29 0.13 16 47 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.05 0.69 6.30 -51.93 -0.33 0.37 16 49 H 0.10 1.27 5.82 -51.93 -0.30 0.97 16 50 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 51 H 0.09 0.83 5.30 -51.93 -0.28 0.55 16 LS Contribution 385.79 15.07 5.81 5.81 Total: -1.00 -34.34 385.79 -9.30 -43.64 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -8.14 Total: 1.52 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: -0.84 Total: 8.47 kcal Atomic # 7 Polarization: -60.95 SS G_CDS: -1.29 Total: -62.24 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: 0.17 Total: -14.37 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.34 -9.30 -43.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754662646.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.062 kcal (2) G-P(sol) polarization free energy of solvation -34.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.77 seconds