Wall clock time and date at job start Tue Mar 31 2020 22:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50700 * 120.00285 * 2 1 4 4 N 1.46506 * 109.47274 * 124.99293 * 3 2 1 5 5 C 1.34775 * 119.99951 * 179.97438 * 4 3 2 6 6 O 1.21592 * 119.99882 * 0.02562 * 5 4 3 7 7 N 1.34776 * 120.00001 * 180.02562 * 5 4 3 8 8 C 1.46494 * 120.00129 * 180.02562 * 7 5 4 9 9 C 1.53003 * 109.46849 * 60.00330 * 8 7 5 10 10 C 1.52994 * 109.47278 * 300.00504 * 8 7 5 11 11 C 1.50697 * 109.47128 * 180.02562 * 8 7 5 12 12 O 1.21288 * 120.00022 * 145.00335 * 11 8 7 13 13 N 1.34774 * 120.00268 * 325.00251 * 11 8 7 14 14 C 1.46496 * 120.00477 * 180.02562 * 13 11 8 15 15 H 1.09000 * 109.47163 * 34.99781 * 14 13 11 16 16 C 1.53003 * 109.46919 * 275.00172 * 14 13 11 17 17 C 1.52994 * 109.47647 * 155.00077 * 14 13 11 18 18 C 1.53503 * 114.21036 * 180.02562 * 17 14 13 19 19 N 1.47064 * 87.98556 * 87.51569 * 18 17 14 20 20 C 1.36933 * 136.05626 * 207.08712 * 19 18 17 21 21 H 1.08009 * 120.00045 * 7.55701 * 20 19 18 22 22 C 1.38808 * 120.00252 * 187.56248 * 20 19 18 23 23 N 1.31615 * 120.00431 * 174.37712 * 22 20 19 24 24 Si 1.86804 * 119.99686 * 354.37987 * 22 20 19 25 25 H 1.48507 * 109.46834 * 174.94682 * 24 22 20 26 26 H 1.48500 * 109.47105 * 294.94404 * 24 22 20 27 27 H 1.48494 * 109.47251 * 54.94684 * 24 22 20 28 28 C 1.47059 * 87.88592 * 27.34362 * 19 18 17 29 29 H 1.07992 * 119.99993 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.99423 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.00166 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.46916 * 4.99855 * 3 2 1 33 33 H 1.08999 * 109.47375 * 244.99849 * 3 2 1 34 34 H 0.97002 * 119.99877 * 0.02562 * 4 3 2 35 35 H 0.97002 * 119.99827 * 0.02562 * 7 5 4 36 36 H 1.09000 * 109.46883 * 179.97438 * 9 8 7 37 37 H 1.08997 * 109.47165 * 299.99687 * 9 8 7 38 38 H 1.09000 * 109.47446 * 60.00252 * 9 8 7 39 39 H 1.08997 * 109.46967 * 299.99360 * 10 8 7 40 40 H 1.08997 * 109.47420 * 59.99895 * 10 8 7 41 41 H 1.09003 * 109.47574 * 180.02562 * 10 8 7 42 42 H 0.97003 * 120.00063 * 359.97438 * 13 11 8 43 43 H 1.09000 * 109.47332 * 59.99853 * 16 14 13 44 44 H 1.09004 * 109.46915 * 179.97438 * 16 14 13 45 45 H 1.09003 * 109.47329 * 299.99537 * 16 14 13 46 46 H 1.09002 * 113.41582 * 46.79665 * 17 14 13 47 47 H 1.09001 * 113.46288 * 332.73497 * 18 17 14 48 48 H 1.08991 * 113.52026 * 202.30826 * 18 17 14 49 49 H 0.97003 * 120.00282 * 354.81718 * 23 22 20 50 50 H 1.09007 * 113.46896 * 87.43276 * 28 19 18 51 51 H 1.09004 * 113.47090 * 217.87050 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1316 5 6 3.7790 2.4086 1.3330 6 8 3.7151 3.3579 0.5758 7 7 4.6351 2.4331 2.3736 8 6 5.4882 3.6036 2.5929 9 6 4.6126 4.8402 2.8055 10 6 6.3847 3.8173 1.3717 11 6 6.3456 3.3791 3.8117 12 8 7.4762 3.8168 3.8468 13 7 5.8561 2.6920 4.8627 14 6 6.6893 2.4742 6.0478 15 1 7.3237 3.3453 6.2110 16 6 7.5654 1.2380 5.8350 17 6 5.7931 2.2600 7.2691 18 6 6.5590 2.0210 8.5778 19 7 6.5964 3.4796 8.7617 20 6 7.4191 4.3729 9.3944 21 1 8.3544 4.0387 9.8187 22 6 7.0510 5.7078 9.4906 23 7 7.7856 6.5441 10.1929 24 14 5.5128 6.3173 8.6233 25 1 5.2744 7.7392 8.9794 26 1 5.6930 6.1984 7.1541 27 1 4.3485 5.4989 9.0471 28 6 5.3578 3.5561 7.9725 29 1 -0.5400 -0.9352 -0.0004 30 1 -0.5399 0.9354 -0.0004 31 1 1.8501 -0.9353 0.0004 32 1 1.3587 2.1316 0.0895 33 1 2.6214 1.4026 -0.9313 34 1 3.0450 0.5745 1.7353 35 1 4.6863 1.6756 2.9774 36 1 5.2474 5.7111 2.9691 37 1 3.9928 5.0025 1.9237 38 1 3.9740 4.6880 3.6755 39 1 7.0085 2.9364 1.2203 40 1 5.7649 3.9796 0.4899 41 1 7.0198 4.6880 1.5350 42 1 4.9517 2.3423 4.8348 43 1 8.2039 1.3905 4.9649 44 1 8.1857 1.0762 6.7166 45 1 6.9310 0.3667 5.6719 46 1 4.9802 1.5558 7.0918 47 1 7.5433 1.5768 8.4297 48 1 5.9727 1.5027 9.3365 49 1 8.5411 6.2144 10.7043 50 1 4.4539 3.4425 8.5711 51 1 5.3186 4.4199 7.3088 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755392149.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:04 Heat of formation + Delta-G solvation = 23.005217 kcal Electronic energy + Delta-G solvation = -30646.436867 eV Core-core repulsion = 26584.076419 eV Total energy + Delta-G solvation = -4062.360448 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.00731 -39.79914 -38.73208 -36.63895 -35.34282 -34.98397 -33.41351 -32.39056 -31.18193 -30.50344 -27.85282 -27.29942 -26.44607 -25.57006 -24.42030 -23.13136 -21.44461 -21.18115 -20.70116 -19.78393 -19.28367 -18.57680 -17.60254 -17.38992 -16.45011 -16.27642 -15.86005 -15.43178 -15.22092 -14.84869 -14.77499 -14.40453 -14.15320 -13.94254 -13.67749 -13.64200 -13.38407 -13.22622 -13.05970 -12.83590 -12.41024 -12.25401 -12.14868 -12.02088 -11.88214 -11.64385 -11.51470 -11.40881 -11.30532 -11.00907 -10.64670 -10.48197 -10.31759 -10.24986 -10.11192 -9.60103 -9.56505 -9.23447 -9.19876 -9.12297 -8.98741 -8.86775 -7.15697 -6.26893 -3.21368 1.51702 2.29569 2.75378 2.92565 3.07221 3.40732 3.45742 3.65461 3.90422 4.28686 4.46991 4.58111 4.61489 4.73115 4.81494 4.90394 4.94536 5.03644 5.10262 5.27766 5.32827 5.44675 5.53323 5.55349 5.62879 5.69007 5.71374 5.78995 5.81474 5.86344 5.94412 6.00737 6.01957 6.13425 6.15942 6.20281 6.22218 6.23380 6.27050 6.28602 6.38189 6.45486 6.53515 6.57555 6.85522 7.12228 7.47203 7.66623 8.18838 8.25954 8.30991 8.99550 9.51987 10.37499 11.22956 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014417 B = 0.002807 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.625873 B = 9971.615861 C =10186.051695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.178 4.178 3 C 0.166 3.834 4 N -0.745 5.745 5 C 0.710 3.290 6 O -0.580 6.580 7 N -0.740 5.740 8 C 0.181 3.819 9 C -0.162 4.162 10 C -0.149 4.149 11 C 0.516 3.484 12 O -0.517 6.517 13 N -0.720 5.720 14 C 0.164 3.836 15 H 0.104 0.896 16 C -0.156 4.156 17 C -0.142 4.142 18 C 0.131 3.869 19 N -0.626 5.626 20 C -0.303 4.303 21 H 0.083 0.917 22 C -0.024 4.024 23 N -0.934 5.934 24 Si 1.069 2.931 25 H -0.295 1.295 26 H -0.292 1.292 27 H -0.289 1.289 28 C 0.100 3.900 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.115 0.885 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.397 0.603 35 H 0.395 0.605 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.393 0.607 43 H 0.056 0.944 44 H 0.071 0.929 45 H 0.051 0.949 46 H 0.076 0.924 47 H 0.049 0.951 48 H 0.040 0.960 49 H 0.261 0.739 50 H 0.045 0.955 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.605 -16.897 -20.243 29.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.197 4.197 3 C 0.042 3.958 4 N -0.401 5.401 5 C 0.410 3.590 6 O -0.458 6.458 7 N -0.398 5.398 8 C 0.092 3.908 9 C -0.220 4.220 10 C -0.208 4.208 11 C 0.299 3.701 12 O -0.391 6.391 13 N -0.372 5.372 14 C 0.060 3.940 15 H 0.122 0.878 16 C -0.214 4.214 17 C -0.162 4.162 18 C 0.004 3.996 19 N -0.355 5.355 20 C -0.429 4.429 21 H 0.100 0.900 22 C -0.223 4.223 23 N -0.576 5.576 24 Si 0.902 3.098 25 H -0.223 1.223 26 H -0.220 1.220 27 H -0.216 1.216 28 C -0.026 4.026 29 H 0.121 0.879 30 H 0.119 0.881 31 H 0.133 0.867 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.230 0.770 35 H 0.230 0.770 36 H 0.092 0.908 37 H 0.111 0.889 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.105 0.895 41 H 0.095 0.905 42 H 0.227 0.773 43 H 0.075 0.925 44 H 0.090 0.910 45 H 0.071 0.929 46 H 0.095 0.905 47 H 0.068 0.932 48 H 0.057 0.943 49 H 0.071 0.929 50 H 0.063 0.937 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.502 -14.114 -21.103 28.754 hybrid contribution 0.364 -2.473 1.184 2.766 sum -13.138 -16.587 -19.919 29.060 Atomic orbital electron populations 1.24004 0.95795 1.02510 0.97852 1.23011 0.96229 0.98146 1.02274 1.20247 0.91154 0.95364 0.88992 1.45120 1.42967 1.19505 1.32491 1.15830 0.78774 0.83046 0.81347 1.90888 1.71502 1.35568 1.47805 1.45300 1.42679 1.20801 1.31022 1.20447 0.89891 0.86436 0.94055 1.22226 1.00161 0.95777 1.03866 1.22065 0.98963 1.02942 0.96795 1.20414 0.87479 0.78116 0.84061 1.90772 1.18340 1.48733 1.81240 1.46198 1.17731 1.56258 1.17016 1.20700 0.91594 0.99890 0.81777 0.87768 1.22105 0.99766 0.97022 1.02543 1.23209 0.98668 0.99464 0.94830 1.22353 0.97606 0.87896 0.91784 1.46024 1.24836 1.01570 1.63079 1.20132 0.99859 0.89570 1.33348 0.89954 1.25675 1.04306 0.92001 1.00304 1.70908 1.20100 1.35873 1.30734 0.83736 0.75471 0.75299 0.75335 1.22265 1.22042 1.21591 1.22818 0.91326 0.95534 0.92907 0.87867 0.88074 0.86720 0.91079 0.90723 0.76953 0.77048 0.90776 0.88914 0.92089 0.92554 0.89544 0.90509 0.77259 0.92483 0.91042 0.92945 0.90544 0.93238 0.94265 0.92934 0.93744 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.67 14.32 29.01 0.42 -0.25 16 2 C -0.18 -0.80 9.63 -36.03 -0.35 -1.14 16 3 C 0.17 1.07 6.11 -5.19 -0.03 1.04 16 4 N -0.74 -5.05 5.55 -66.41 -0.37 -5.42 16 5 C 0.71 7.12 7.98 -86.92 -0.69 6.43 16 6 O -0.58 -7.80 12.55 5.28 0.07 -7.74 16 7 N -0.74 -6.69 4.86 -53.51 -0.26 -6.95 16 8 C 0.18 2.19 0.98 -132.98 -0.13 2.06 16 9 C -0.16 -2.03 8.38 37.16 0.31 -1.72 16 10 C -0.15 -1.88 7.93 37.15 0.29 -1.58 16 11 C 0.52 7.51 6.61 -10.99 -0.07 7.44 16 12 O -0.52 -9.79 15.76 5.55 0.09 -9.70 16 13 N -0.72 -9.15 4.77 -53.81 -0.26 -9.40 16 14 C 0.16 2.55 2.43 -67.93 -0.16 2.38 16 15 H 0.10 2.18 7.36 -51.93 -0.38 1.80 16 16 C -0.16 -2.05 9.29 37.16 0.35 -1.71 16 17 C -0.14 -2.20 3.73 -89.97 -0.34 -2.53 16 18 C 0.13 2.40 8.08 -8.51 -0.07 2.33 16 19 N -0.63 -15.12 3.49 -184.61 -0.64 -15.77 16 20 C -0.30 -8.78 11.08 -15.06 -0.17 -8.95 16 21 H 0.08 2.52 8.06 -52.48 -0.42 2.09 16 22 C -0.02 -0.73 5.50 -17.43 -0.10 -0.82 16 23 N -0.93 -30.05 13.70 55.49 0.76 -29.29 16 24 Si 1.07 27.48 25.16 -169.99 -4.28 23.20 16 25 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 26 H -0.29 -7.26 6.51 56.52 0.37 -6.89 16 27 H -0.29 -6.83 6.20 56.52 0.35 -6.48 16 28 C 0.10 2.03 5.24 -8.38 -0.04 1.99 16 29 H 0.10 0.31 8.06 -52.49 -0.42 -0.11 16 30 H 0.10 0.40 7.84 -52.49 -0.41 -0.01 16 31 H 0.11 0.40 8.06 -52.49 -0.42 -0.02 16 32 H 0.07 0.52 7.79 -51.93 -0.40 0.12 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.40 1.67 8.48 -40.82 -0.35 1.33 16 35 H 0.39 2.58 7.25 -40.82 -0.30 2.29 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.09 1.20 6.16 -51.93 -0.32 0.88 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 1.12 6.16 -51.93 -0.32 0.80 16 41 H 0.08 1.02 7.87 -51.93 -0.41 0.62 16 42 H 0.39 3.68 7.35 -40.82 -0.30 3.38 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.07 0.98 6.50 -51.93 -0.34 0.64 16 45 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.05 0.88 6.43 -51.93 -0.33 0.55 16 48 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.26 8.27 8.73 -40.82 -0.36 7.91 16 50 H 0.05 0.88 7.66 -51.92 -0.40 0.48 16 51 H 0.05 1.15 4.71 -51.93 -0.24 0.91 16 LS Contribution 402.57 15.07 6.07 6.07 Total: -1.00 -36.64 402.57 -8.00 -44.64 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -8.39 Total: 5.40 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: -0.78 Total: 4.96 kcal Atomic # 7 Polarization: -66.06 SS G_CDS: -0.77 Total: -66.83 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: 0.15 Total: -17.44 kcal Atomic # 14 Polarization: 27.48 SS G_CDS: -4.28 Total: 23.20 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.64 -8.00 -44.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755392149.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.649 kcal (2) G-P(sol) polarization free energy of solvation -36.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds