Wall clock time and date at job start Tue Mar 31 2020 22:04:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.09005 * 109.46924 * 2 1
4 4 N 1.46496 * 109.47023 * 120.00172 * 2 1 3
5 5 C 1.34774 * 119.99980 * 274.99635 * 4 2 1
6 6 O 1.21270 * 120.00244 * 0.02562 * 5 4 2
7 7 C 1.50706 * 119.99608 * 180.02562 * 5 4 2
8 8 N 1.46897 * 109.46760 * 180.02562 * 7 5 4
9 9 C 1.47195 * 110.99967 * 188.93764 * 8 7 5
10 10 C 1.52994 * 108.72294 * 167.62220 * 9 8 7
11 11 N 1.46015 * 110.03825 * 50.29725 * 10 9 8
12 12 C 1.33716 * 122.92916 * 341.84646 * 11 10 9
13 13 O 1.21274 * 118.62089 * 181.68248 * 12 11 10
14 14 C 1.46895 * 111.00469 * 66.04454 * 8 7 5
15 15 C 1.52999 * 109.46615 * 240.00722 * 2 1 3
16 16 C 1.53047 * 109.45729 * 180.02562 * 15 2 1
17 17 C 1.53189 * 109.31149 * 178.59654 * 16 15 2
18 18 N 1.46924 * 108.76566 * 54.65439 * 17 16 15
19 19 C 1.36938 * 120.62922 * 126.40291 * 18 17 16
20 20 H 1.07995 * 120.00172 * 331.82449 * 19 18 17
21 21 C 1.38817 * 119.99642 * 151.82281 * 19 18 17
22 22 N 1.31616 * 120.00482 * 343.08175 * 21 19 18
23 23 Si 1.86806 * 119.99773 * 163.07992 * 21 19 18
24 24 H 1.48504 * 109.46902 * 59.99926 * 23 21 19
25 25 H 1.48491 * 109.46976 * 179.97438 * 23 21 19
26 26 H 1.48503 * 109.47073 * 300.00174 * 23 21 19
27 27 C 1.46928 * 118.73709 * 306.38315 * 18 17 16
28 28 C 1.53037 * 109.46645 * 59.96988 * 15 2 1
29 29 H 1.08994 * 109.47361 * 180.02562 * 1 2 3
30 30 H 1.09005 * 109.46865 * 299.99768 * 1 2 3
31 31 H 1.08997 * 109.47192 * 59.99213 * 1 2 3
32 32 H 0.97003 * 119.99752 * 95.00277 * 4 2 1
33 33 H 1.08999 * 109.47009 * 60.00151 * 7 5 4
34 34 H 1.09005 * 109.47002 * 300.00126 * 7 5 4
35 35 H 1.09000 * 109.59061 * 287.40797 * 9 8 7
36 36 H 1.09001 * 109.59397 * 47.85531 * 9 8 7
37 37 H 1.09001 * 109.37037 * 290.12790 * 10 9 8
38 38 H 1.08994 * 109.38014 * 170.47714 * 10 9 8
39 39 H 0.97004 * 118.52887 * 162.12487 * 11 10 9
40 40 H 1.09003 * 109.38697 * 53.50409 * 14 8 7
41 41 H 1.09002 * 109.38651 * 293.81933 * 14 8 7
42 42 H 1.09001 * 109.45869 * 299.99517 * 15 2 1
43 43 H 1.08999 * 109.49157 * 298.56355 * 16 15 2
44 44 H 1.09005 * 109.49606 * 58.65608 * 16 15 2
45 45 H 1.09004 * 109.59951 * 294.86448 * 17 16 15
46 46 H 1.08997 * 109.70029 * 174.50542 * 17 16 15
47 47 H 0.96999 * 120.00246 * 180.02562 * 22 21 19
48 48 H 1.08996 * 109.58559 * 293.81771 * 27 18 17
49 49 H 1.09003 * 109.70010 * 173.46654 * 27 18 17
50 50 H 1.08998 * 109.49445 * 301.34233 * 28 15 2
51 51 H 1.09006 * 109.49427 * 61.39920 * 28 15 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 7 2.0184 -0.6906 1.1961
5 6 2.1471 -0.0183 2.3571
6 8 1.8584 1.1583 2.4117
7 6 2.6500 -0.7287 3.5874
8 7 2.6988 0.2150 4.7121
9 6 3.3813 -0.3814 5.8718
10 6 3.6791 0.7230 6.8878
11 7 2.4716 1.5013 7.1492
12 6 1.4115 1.4939 6.3342
13 8 0.4609 2.1942 6.6112
14 6 1.3489 0.6545 5.0895
15 6 2.0399 -0.7211 -1.2494
16 6 3.5704 -0.7215 -1.2488
17 6 4.0772 -1.4747 -2.4828
18 7 3.4746 -0.8767 -3.6820
19 6 4.2605 -0.4512 -4.7195
20 1 5.2716 -0.1217 -4.5312
21 6 3.7574 -0.4434 -6.0133
22 7 2.6775 -1.1374 -6.3038
23 14 4.6133 0.5523 -7.3422
24 1 6.0081 0.0682 -7.5024
25 1 3.8843 0.3939 -8.6261
26 1 4.6283 1.9857 -6.9543
27 6 2.0127 -0.7445 -3.7469
28 6 1.5291 0.0001 -2.4987
29 1 -0.3634 -1.0276 0.0005
30 1 -0.3633 0.5138 0.8901
31 1 -0.3633 0.5139 -0.8899
32 1 2.2491 -1.6318 1.1525
33 1 3.6493 -1.1205 3.3977
34 1 1.9777 -1.5511 3.8324
35 1 2.7376 -1.1338 6.3276
36 1 4.3148 -0.8427 5.5493
37 1 4.4537 1.3795 6.4915
38 1 4.0286 0.2745 7.8177
39 1 2.4386 2.0512 7.9476
40 1 0.7222 -0.2183 5.2728
41 1 0.9197 1.2423 4.2781
42 1 1.6765 -1.7488 -1.2492
43 1 3.9344 0.3056 -1.2742
44 1 3.9337 -1.2147 -0.3472
45 1 3.7903 -2.5240 -2.4141
46 1 5.1627 -1.3958 -2.5412
47 1 2.3263 -1.1322 -7.2080
48 1 1.5575 -1.7343 -3.7814
49 1 1.7338 -0.1828 -4.6385
50 1 0.4393 0.0208 -2.4867
51 1 1.9121 1.0206 -2.5118
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001755844050.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:04:53
Heat of formation + Delta-G solvation = -43.340219 kcal
Electronic energy + Delta-G solvation = -30137.060235 eV
Core-core repulsion = 26071.822833 eV
Total energy + Delta-G solvation = -4065.237402 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 1.32 seconds
Orbital eigenvalues (eV)
-40.81497 -39.82801 -38.15309 -37.27832 -35.40977 -34.78896 -32.91976 -31.46973
-30.20376 -29.84721 -29.45783 -28.55065 -25.57644 -25.15789 -23.56873 -22.80180
-22.02932 -20.68305 -20.43961 -19.66677 -19.12587 -17.76287 -17.59661 -16.88126
-16.62954 -16.22094 -15.94009 -15.47038 -15.05116 -14.87282 -14.68955 -14.43257
-14.07736 -13.81702 -13.59818 -13.43969 -13.32830 -13.24044 -12.96752 -12.82618
-12.44871 -12.36370 -12.24856 -12.10958 -11.84434 -11.76382 -11.34186 -11.12970
-10.98363 -10.70148 -10.43663 -10.28358 -10.24054 -10.15979 -9.94695 -9.83312
-9.54076 -9.48415 -9.43302 -8.98990 -8.89479 -8.46099 -6.66238 -5.78668
-3.20957 2.31303 2.56469 2.76674 2.95918 3.38687 3.44536 3.46158
3.46745 4.15817 4.24405 4.46747 4.50226 4.62783 4.67756 4.83489
4.90396 4.95536 4.98892 5.07733 5.21634 5.29564 5.33938 5.38638
5.43362 5.52783 5.66432 5.72832 5.86059 5.95944 6.07159 6.14536
6.21510 6.24586 6.27672 6.32561 6.45408 6.48332 6.53505 6.61403
6.72435 6.77316 6.84659 6.91049 6.98863 7.36932 7.50468 7.66085
7.79721 7.87413 8.21132 8.45909 9.22132 9.85669 10.42281 11.29777
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.025524 B = 0.002056 C = 0.002005
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1096.754609 B =13617.550947 C =13965.181585
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.146 3.854
3 H 0.086 0.914
4 N -0.720 5.720
5 C 0.511 3.489
6 O -0.524 6.524
7 C 0.033 3.967
8 N -0.514 5.514
9 C 0.032 3.968
10 C 0.117 3.883
11 N -0.722 5.722
12 C 0.529 3.471
13 O -0.552 6.552
14 C 0.033 3.967
15 C -0.083 4.083
16 C -0.125 4.125
17 C 0.146 3.854
18 N -0.592 5.592
19 C -0.252 4.252
20 H 0.064 0.936
21 C 0.002 3.998
22 N -0.904 5.904
23 Si 0.902 3.098
24 H -0.283 1.283
25 H -0.291 1.291
26 H -0.284 1.284
27 C 0.172 3.828
28 C -0.134 4.134
29 H 0.053 0.947
30 H 0.053 0.947
31 H 0.071 0.929
32 H 0.398 0.602
33 H 0.111 0.889
34 H 0.068 0.932
35 H 0.048 0.952
36 H 0.100 0.900
37 H 0.076 0.924
38 H 0.082 0.918
39 H 0.400 0.600
40 H 0.068 0.932
41 H 0.135 0.865
42 H 0.066 0.934
43 H 0.058 0.942
44 H 0.047 0.953
45 H 0.015 0.985
46 H 0.051 0.949
47 H 0.254 0.746
48 H 0.016 0.984
49 H 0.087 0.913
50 H 0.053 0.947
51 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.329 -3.442 25.577 25.809
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C 0.042 3.958
3 H 0.104 0.896
4 N -0.372 5.372
5 C 0.296 3.704
6 O -0.400 6.400
7 C -0.098 4.098
8 N -0.240 5.240
9 C -0.096 4.096
10 C -0.008 4.008
11 N -0.375 5.375
12 C 0.316 3.684
13 O -0.429 6.429
14 C -0.098 4.098
15 C -0.102 4.102
16 C -0.164 4.164
17 C 0.019 3.981
18 N -0.315 5.315
19 C -0.382 4.382
20 H 0.082 0.918
21 C -0.197 4.197
22 N -0.548 5.548
23 Si 0.732 3.268
24 H -0.209 1.209
25 H -0.216 1.216
26 H -0.210 1.210
27 C 0.046 3.954
28 C -0.174 4.174
29 H 0.073 0.927
30 H 0.072 0.928
31 H 0.090 0.910
32 H 0.232 0.768
33 H 0.129 0.871
34 H 0.086 0.914
35 H 0.066 0.934
36 H 0.118 0.882
37 H 0.095 0.905
38 H 0.100 0.900
39 H 0.236 0.764
40 H 0.086 0.914
41 H 0.153 0.847
42 H 0.084 0.916
43 H 0.076 0.924
44 H 0.066 0.934
45 H 0.033 0.967
46 H 0.070 0.930
47 H 0.064 0.936
48 H 0.035 0.965
49 H 0.105 0.895
50 H 0.072 0.928
51 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -0.179 -1.956 25.219 25.296
hybrid contribution 0.214 -0.639 -0.223 0.710
sum 0.035 -2.595 24.996 25.131
Atomic orbital electron populations
1.22200 0.95599 1.01840 1.02381 1.21162 0.93622 0.97608 0.83438
0.89585 1.46112 1.67239 1.13991 1.09814 1.20338 0.78143 0.87560
0.84388 1.90693 1.49114 1.15637 1.84523 1.22090 1.03540 0.93819
0.90332 1.62149 1.17637 1.38475 1.05701 1.22571 1.00508 0.95598
0.90933 1.21478 0.87257 0.93478 0.98593 1.45547 1.16357 1.48750
1.26839 1.20106 0.81913 0.82132 0.84245 1.90777 1.36024 1.42048
1.74037 1.22536 0.90587 0.99667 0.96964 1.21328 0.96403 0.99212
0.93284 1.22034 0.94518 1.01362 0.98486 1.20886 0.96522 0.93852
0.86819 1.44041 1.02047 1.69870 1.15544 1.19136 0.97240 1.36197
0.85600 0.91847 1.25039 0.98435 0.99122 0.97062 1.70014 1.24584
1.40866 1.19348 0.86381 0.78914 0.80444 0.81099 1.20916 1.21649
1.21013 1.20757 0.83263 0.96777 0.94601 1.22268 0.98860 1.00113
0.96132 0.92744 0.92792 0.90974 0.76804 0.87055 0.91425 0.93399
0.88164 0.90534 0.89964 0.76431 0.91416 0.84692 0.91566 0.92355
0.93446 0.96736 0.92995 0.93606 0.96543 0.89491 0.92808 0.92503
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.00 9.13 37.16 0.34 -1.66 16
2 C 0.15 1.91 2.16 -67.93 -0.15 1.76 16
3 H 0.09 1.35 7.58 -51.93 -0.39 0.96 16
4 N -0.72 -7.47 4.36 -53.80 -0.23 -7.71 16
5 C 0.51 5.69 7.55 -10.98 -0.08 5.60 16
6 O -0.52 -8.10 13.97 5.57 0.08 -8.03 16
7 C 0.03 0.23 5.44 -4.97 -0.03 0.21 16
8 N -0.51 -4.28 4.47 -237.54 -1.06 -5.35 16
9 C 0.03 0.15 5.60 -3.67 -0.02 0.13 16
10 C 0.12 0.54 7.39 -4.31 -0.03 0.51 16
11 N -0.72 -5.57 5.52 -61.06 -0.34 -5.91 16
12 C 0.53 6.05 7.81 -11.67 -0.09 5.96 16
13 O -0.55 -8.59 17.82 5.56 0.10 -8.49 16
14 C 0.03 0.33 5.14 -5.19 -0.03 0.31 16
15 C -0.08 -1.24 1.79 -90.58 -0.16 -1.40 16
16 C -0.12 -2.00 5.22 -26.61 -0.14 -2.14 16
17 C 0.15 2.91 6.52 -3.71 -0.02 2.89 16
18 N -0.59 -14.48 2.99 -172.33 -0.52 -15.00 16
19 C -0.25 -6.85 9.58 -15.06 -0.14 -7.00 16
20 H 0.06 1.70 7.88 -52.49 -0.41 1.29 16
21 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16
22 N -0.90 -25.96 11.19 55.49 0.62 -25.34 16
23 Si 0.90 21.63 29.59 -169.99 -5.03 16.60 16
24 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16
25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16
26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
27 C 0.17 3.96 5.30 -3.71 -0.02 3.94 16
28 C -0.13 -2.41 5.04 -26.62 -0.13 -2.55 16
29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16
30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16
31 H 0.07 0.91 6.40 -51.93 -0.33 0.58 16
32 H 0.40 3.14 8.39 -40.82 -0.34 2.80 16
33 H 0.11 0.56 7.93 -51.93 -0.41 0.14 16
34 H 0.07 0.34 8.05 -51.93 -0.42 -0.08 16
35 H 0.05 0.20 8.08 -51.93 -0.42 -0.22 16
36 H 0.10 0.28 7.91 -51.93 -0.41 -0.13 16
37 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16
38 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16
39 H 0.40 2.61 8.84 -40.82 -0.36 2.25 16
40 H 0.07 0.58 8.05 -51.93 -0.42 0.16 16
41 H 0.14 1.78 6.01 -51.93 -0.31 1.47 16
42 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16
43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16
44 H 0.05 0.62 7.41 -51.93 -0.38 0.24 16
45 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16
46 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16
47 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16
48 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16
49 H 0.09 2.28 6.07 -51.93 -0.31 1.96 16
50 H 0.05 0.87 6.36 -51.93 -0.33 0.54 16
51 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16
LS Contribution 394.31 15.07 5.94 5.94
Total: -1.00 -35.04 394.31 -9.85 -44.89
By element:
Atomic # 1 Polarization: 10.47 SS G_CDS: -8.61 Total: 1.85 kcal
Atomic # 6 Polarization: 7.33 SS G_CDS: -0.80 Total: 6.54 kcal
Atomic # 7 Polarization: -57.78 SS G_CDS: -1.53 Total: -59.30 kcal
Atomic # 8 Polarization: -16.69 SS G_CDS: 0.18 Total: -16.51 kcal
Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal
Total LS contribution 5.94 Total: 5.94 kcal
Total: -35.04 -9.85 -44.89 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001755844050.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 1.548 kcal
(2) G-P(sol) polarization free energy of solvation -35.039 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.491 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.849 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.888 kcal
(6) G-S(sol) free energy of system = (1) + (5) -43.340 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.33 seconds