Wall clock time and date at job start Tue Mar 31 2020 22:04:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.09005 * 109.46924 * 2 1
4 4 N 1.46496 * 109.47023 * 120.00172 * 2 1 3
5 5 C 1.34774 * 119.99980 * 274.99635 * 4 2 1
6 6 O 1.21270 * 120.00244 * 0.02562 * 5 4 2
7 7 C 1.50706 * 119.99608 * 180.02562 * 5 4 2
8 8 N 1.46897 * 109.46760 * 180.02562 * 7 5 4
9 9 C 1.47195 * 110.99967 * 188.93764 * 8 7 5
10 10 C 1.52994 * 108.72294 * 167.62220 * 9 8 7
11 11 N 1.46015 * 110.03825 * 50.29725 * 10 9 8
12 12 C 1.33716 * 122.92916 * 341.84646 * 11 10 9
13 13 O 1.21274 * 118.62089 * 181.68248 * 12 11 10
14 14 C 1.46895 * 111.00469 * 66.04454 * 8 7 5
15 15 C 1.52999 * 109.46615 * 240.00722 * 2 1 3
16 16 C 1.53047 * 109.45729 * 180.02562 * 15 2 1
17 17 C 1.53189 * 109.31149 * 178.59654 * 16 15 2
18 18 N 1.46924 * 108.76566 * 54.65439 * 17 16 15
19 19 C 1.36938 * 120.62922 * 126.40291 * 18 17 16
20 20 H 1.07995 * 120.00172 * 331.82449 * 19 18 17
21 21 C 1.38817 * 119.99642 * 151.82281 * 19 18 17
22 22 N 1.31616 * 120.00482 * 343.08175 * 21 19 18
23 23 Si 1.86806 * 119.99773 * 163.07992 * 21 19 18
24 24 H 1.48504 * 109.46902 * 59.99926 * 23 21 19
25 25 H 1.48491 * 109.46976 * 179.97438 * 23 21 19
26 26 H 1.48503 * 109.47073 * 300.00174 * 23 21 19
27 27 C 1.46928 * 118.73709 * 306.38315 * 18 17 16
28 28 C 1.53037 * 109.46645 * 59.96988 * 15 2 1
29 29 H 1.08994 * 109.47361 * 180.02562 * 1 2 3
30 30 H 1.09005 * 109.46865 * 299.99768 * 1 2 3
31 31 H 1.08997 * 109.47192 * 59.99213 * 1 2 3
32 32 H 0.97003 * 119.99752 * 95.00277 * 4 2 1
33 33 H 1.08999 * 109.47009 * 60.00151 * 7 5 4
34 34 H 1.09005 * 109.47002 * 300.00126 * 7 5 4
35 35 H 1.09000 * 109.59061 * 287.40797 * 9 8 7
36 36 H 1.09001 * 109.59397 * 47.85531 * 9 8 7
37 37 H 1.09001 * 109.37037 * 290.12790 * 10 9 8
38 38 H 1.08994 * 109.38014 * 170.47714 * 10 9 8
39 39 H 0.97004 * 118.52887 * 162.12487 * 11 10 9
40 40 H 1.09003 * 109.38697 * 53.50409 * 14 8 7
41 41 H 1.09002 * 109.38651 * 293.81933 * 14 8 7
42 42 H 1.09001 * 109.45869 * 299.99517 * 15 2 1
43 43 H 1.08999 * 109.49157 * 298.56355 * 16 15 2
44 44 H 1.09005 * 109.49606 * 58.65608 * 16 15 2
45 45 H 1.09004 * 109.59951 * 294.86448 * 17 16 15
46 46 H 1.08997 * 109.70029 * 174.50542 * 17 16 15
47 47 H 0.96999 * 120.00246 * 180.02562 * 22 21 19
48 48 H 1.08996 * 109.58559 * 293.81771 * 27 18 17
49 49 H 1.09003 * 109.70010 * 173.46654 * 27 18 17
50 50 H 1.08998 * 109.49445 * 301.34233 * 28 15 2
51 51 H 1.09006 * 109.49427 * 61.39920 * 28 15 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 7 2.0184 -0.6906 1.1961
5 6 2.1471 -0.0183 2.3571
6 8 1.8584 1.1583 2.4117
7 6 2.6500 -0.7287 3.5874
8 7 2.6988 0.2150 4.7121
9 6 3.3813 -0.3814 5.8718
10 6 3.6791 0.7230 6.8878
11 7 2.4716 1.5013 7.1492
12 6 1.4115 1.4939 6.3342
13 8 0.4609 2.1942 6.6112
14 6 1.3489 0.6545 5.0895
15 6 2.0399 -0.7211 -1.2494
16 6 3.5704 -0.7215 -1.2488
17 6 4.0772 -1.4747 -2.4828
18 7 3.4746 -0.8767 -3.6820
19 6 4.2605 -0.4512 -4.7195
20 1 5.2716 -0.1217 -4.5312
21 6 3.7574 -0.4434 -6.0133
22 7 2.6775 -1.1374 -6.3038
23 14 4.6133 0.5523 -7.3422
24 1 6.0081 0.0682 -7.5024
25 1 3.8843 0.3939 -8.6261
26 1 4.6283 1.9857 -6.9543
27 6 2.0127 -0.7445 -3.7469
28 6 1.5291 0.0001 -2.4987
29 1 -0.3634 -1.0276 0.0005
30 1 -0.3633 0.5138 0.8901
31 1 -0.3633 0.5139 -0.8899
32 1 2.2491 -1.6318 1.1525
33 1 3.6493 -1.1205 3.3977
34 1 1.9777 -1.5511 3.8324
35 1 2.7376 -1.1338 6.3276
36 1 4.3148 -0.8427 5.5493
37 1 4.4537 1.3795 6.4915
38 1 4.0286 0.2745 7.8177
39 1 2.4386 2.0512 7.9476
40 1 0.7222 -0.2183 5.2728
41 1 0.9197 1.2423 4.2781
42 1 1.6765 -1.7488 -1.2492
43 1 3.9344 0.3056 -1.2742
44 1 3.9337 -1.2147 -0.3472
45 1 3.7903 -2.5240 -2.4141
46 1 5.1627 -1.3958 -2.5412
47 1 2.3263 -1.1322 -7.2080
48 1 1.5575 -1.7343 -3.7814
49 1 1.7338 -0.1828 -4.6385
50 1 0.4393 0.0208 -2.4867
51 1 1.9121 1.0206 -2.5118
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001755844050.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:04:52
Heat of formation + Delta-G solvation = -71.275907 kcal
Electronic energy + Delta-G solvation = -30138.271617 eV
Core-core repulsion = 26071.822833 eV
Total energy + Delta-G solvation = -4066.448784 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 1.22 seconds
Orbital eigenvalues (eV)
-41.55375 -40.77686 -39.44136 -38.12306 -36.73476 -35.49240 -34.46796 -32.93210
-31.41493 -30.83077 -30.74153 -29.38971 -27.14544 -25.99470 -24.59254 -23.87962
-23.59440 -21.93997 -21.40616 -20.61625 -20.24723 -18.75864 -18.44572 -18.23315
-17.52218 -17.14030 -16.84544 -16.62397 -16.22517 -15.81295 -15.58456 -15.45419
-15.30255 -15.22295 -14.84883 -14.73272 -14.57380 -14.30773 -14.00498 -13.88034
-13.65304 -13.38110 -13.31011 -12.96510 -12.88689 -12.73692 -12.64628 -12.53390
-12.38400 -12.35652 -12.15918 -12.01200 -11.76990 -11.45228 -11.21652 -11.13027
-11.04325 -10.66177 -10.50763 -10.11671 -9.95923 -9.45734 -8.64295 -7.86154
-5.30619 1.45907 1.47860 1.48745 1.55040 1.76033 2.08764 2.31124
2.51834 2.81640 3.27901 3.56949 3.71926 3.75354 3.86543 3.89378
4.00819 4.06932 4.11943 4.29637 4.36169 4.43273 4.45860 4.52415
4.59274 4.61783 4.63557 4.65348 4.77991 4.79628 4.84882 4.93302
5.02410 5.03823 5.06942 5.15989 5.23011 5.33209 5.40333 5.48105
5.56772 5.62069 5.65743 5.67695 5.69077 5.83023 5.95330 6.22641
6.41426 6.72107 7.12049 7.17509 7.42255 7.90521 8.40501 9.19513
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.025524 B = 0.002056 C = 0.002005
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1096.754609 B =13617.550947 C =13965.181585
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C 0.159 3.841
3 H 0.058 0.942
4 N -0.710 5.710
5 C 0.506 3.494
6 O -0.573 6.573
7 C 0.040 3.960
8 N -0.533 5.533
9 C 0.031 3.969
10 C 0.109 3.891
11 N -0.711 5.711
12 C 0.521 3.479
13 O -0.608 6.608
14 C 0.040 3.960
15 C -0.071 4.071
16 C -0.111 4.111
17 C 0.141 3.859
18 N -0.613 5.613
19 C -0.262 4.262
20 H 0.062 0.938
21 C -0.051 4.051
22 N -0.933 5.933
23 Si 0.963 3.037
24 H -0.275 1.275
25 H -0.293 1.293
26 H -0.282 1.282
27 C 0.178 3.822
28 C -0.123 4.123
29 H 0.071 0.929
30 H 0.045 0.955
31 H 0.065 0.935
32 H 0.415 0.585
33 H 0.144 0.856
34 H 0.098 0.902
35 H 0.061 0.939
36 H 0.129 0.871
37 H 0.076 0.924
38 H 0.119 0.881
39 H 0.405 0.595
40 H 0.084 0.916
41 H 0.099 0.901
42 H 0.081 0.919
43 H 0.039 0.961
44 H 0.087 0.913
45 H 0.021 0.979
46 H 0.048 0.952
47 H 0.249 0.751
48 H 0.001 0.999
49 H 0.048 0.952
50 H 0.073 0.927
51 H 0.040 0.960
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.931 -5.342 27.982 28.553
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C 0.054 3.946
3 H 0.076 0.924
4 N -0.363 5.363
5 C 0.293 3.707
6 O -0.452 6.452
7 C -0.090 4.090
8 N -0.260 5.260
9 C -0.096 4.096
10 C -0.014 4.014
11 N -0.362 5.362
12 C 0.308 3.692
13 O -0.490 6.490
14 C -0.090 4.090
15 C -0.090 4.090
16 C -0.150 4.150
17 C 0.015 3.985
18 N -0.337 5.337
19 C -0.392 4.392
20 H 0.080 0.920
21 C -0.246 4.246
22 N -0.579 5.579
23 Si 0.791 3.209
24 H -0.200 1.200
25 H -0.220 1.220
26 H -0.208 1.208
27 C 0.052 3.948
28 C -0.162 4.162
29 H 0.090 0.910
30 H 0.064 0.936
31 H 0.084 0.916
32 H 0.252 0.748
33 H 0.161 0.839
34 H 0.116 0.884
35 H 0.080 0.920
36 H 0.147 0.853
37 H 0.094 0.906
38 H 0.136 0.864
39 H 0.241 0.759
40 H 0.101 0.899
41 H 0.117 0.883
42 H 0.099 0.901
43 H 0.058 0.942
44 H 0.106 0.894
45 H 0.039 0.961
46 H 0.067 0.933
47 H 0.059 0.941
48 H 0.019 0.981
49 H 0.066 0.934
50 H 0.091 0.909
51 H 0.059 0.941
Dipole moment (debyes) X Y Z Total
from point charges 1.499 -3.913 27.672 27.988
hybrid contribution -0.202 -0.075 -0.925 0.949
sum 1.297 -3.988 26.748 27.074
Atomic orbital electron populations
1.22138 0.94892 1.02728 1.01731 1.20741 0.94029 0.96090 0.83784
0.92416 1.45939 1.66874 1.14659 1.08805 1.21173 0.77027 0.87099
0.85428 1.90696 1.51144 1.18101 1.85285 1.22162 1.05705 0.93442
0.87667 1.62081 1.16391 1.40125 1.07394 1.22756 1.01600 0.95635
0.89612 1.21825 0.85563 0.93432 1.00568 1.45601 1.16291 1.48240
1.26036 1.20420 0.82033 0.81799 0.84898 1.90739 1.38305 1.44502
1.75452 1.22272 0.92214 0.99526 0.95019 1.21173 0.95666 0.99653
0.92537 1.21879 0.95034 0.99994 0.98078 1.21077 0.96354 0.94428
0.86607 1.44333 1.02448 1.70579 1.16317 1.19446 0.97496 1.35683
0.86622 0.91997 1.25753 0.99415 1.00375 0.99084 1.70157 1.26041
1.42372 1.19357 0.85412 0.78150 0.78955 0.78378 1.20018 1.21962
1.20818 1.20565 0.82961 0.95840 0.95432 1.22069 1.00006 0.98735
0.95425 0.90999 0.93554 0.91577 0.74797 0.83883 0.88434 0.92040
0.85254 0.90565 0.86353 0.75912 0.89875 0.88304 0.90074 0.94242
0.89429 0.96078 0.93317 0.94149 0.98082 0.93373 0.90865 0.94081
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.65 9.13 71.98 0.66 -2.99 16
2 C 0.16 3.92 2.16 44.99 0.10 4.01 16
3 H 0.06 1.80 7.58 -2.38 -0.02 1.78 16
4 N -0.71 -12.64 4.36 -442.54 -1.93 -14.57 16
5 C 0.51 10.13 7.55 87.66 0.66 10.79 16
6 O -0.57 -17.66 13.97 -3.00 -0.04 -17.70 16
7 C 0.04 0.41 5.44 85.56 0.47 0.87 16
8 N -0.53 -7.38 4.47 -905.44 -4.05 -11.43 16
9 C 0.03 0.16 5.60 86.24 0.48 0.65 16
10 C 0.11 0.64 7.39 86.47 0.64 1.28 16
11 N -0.71 -9.92 5.52 -466.07 -2.57 -12.49 16
12 C 0.52 11.87 7.81 87.68 0.69 12.55 16
13 O -0.61 -19.78 17.82 -3.01 -0.05 -19.84 16
14 C 0.04 0.79 5.14 85.42 0.44 1.23 16
15 C -0.07 -2.00 1.79 -10.77 -0.02 -2.02 16
16 C -0.11 -3.32 5.22 30.67 0.16 -3.16 16
17 C 0.14 5.46 6.52 86.36 0.56 6.02 16
18 N -0.61 -30.30 2.99 -699.11 -2.09 -32.39 16
19 C -0.26 -14.46 9.58 84.03 0.81 -13.66 16
20 H 0.06 3.35 7.88 -2.91 -0.02 3.33 16
21 C -0.05 -2.85 4.92 84.86 0.42 -2.44 16
22 N -0.93 -55.13 11.19 21.65 0.24 -54.88 16
23 Si 0.96 45.22 29.59 68.60 2.03 47.25 16
24 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16
25 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16
26 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16
27 C 0.18 8.37 5.30 86.36 0.46 8.83 16
28 C -0.12 -4.41 5.04 30.67 0.15 -4.25 16
29 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16
30 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16
31 H 0.07 1.61 6.40 -2.39 -0.02 1.59 16
32 H 0.41 4.66 8.39 -92.71 -0.78 3.88 16
33 H 0.14 0.59 7.93 -2.39 -0.02 0.57 16
34 H 0.10 0.47 8.05 -2.38 -0.02 0.45 16
35 H 0.06 0.21 8.08 -2.39 -0.02 0.19 16
36 H 0.13 -0.02 7.91 -2.39 -0.02 -0.04 16
37 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16
38 H 0.12 -0.09 8.14 -2.39 -0.02 -0.11 16
39 H 0.40 4.85 8.84 -92.71 -0.82 4.03 16
40 H 0.08 1.29 8.05 -2.39 -0.02 1.27 16
41 H 0.10 2.72 6.01 -2.39 -0.01 2.71 16
42 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16
43 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16
44 H 0.09 1.94 7.41 -2.38 -0.02 1.92 16
45 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16
46 H 0.05 1.89 7.93 -2.39 -0.02 1.87 16
47 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16
48 H 0.00 0.05 8.14 -2.39 -0.02 0.04 16
49 H 0.05 2.63 6.07 -2.39 -0.01 2.61 16
50 H 0.07 2.32 6.36 -2.39 -0.02 2.31 16
51 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16
Total: -1.00 -82.23 394.31 -2.45 -84.69
By element:
Atomic # 1 Polarization: 14.30 SS G_CDS: -0.65 Total: 13.65 kcal
Atomic # 6 Polarization: 11.05 SS G_CDS: 6.67 Total: 17.71 kcal
Atomic # 7 Polarization: -115.36 SS G_CDS: -10.40 Total: -125.76 kcal
Atomic # 8 Polarization: -37.44 SS G_CDS: -0.10 Total: -37.54 kcal
Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal
Total: -82.23 -2.45 -84.69 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001755844050.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 13.411 kcal
(2) G-P(sol) polarization free energy of solvation -82.234 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.823 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.453 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.687 kcal
(6) G-S(sol) free energy of system = (1) + (5) -71.276 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.22 seconds