Wall clock time and date at job start Tue Mar 31 2020 22:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00279 * 2 1 4 4 C 1.52998 * 109.47213 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47068 * 179.97438 * 4 3 2 6 6 C 1.36738 * 127.13793 * 271.04091 * 5 4 3 7 7 C 1.50701 * 126.34609 * 0.03514 * 6 5 4 8 8 H 1.08991 * 109.47299 * 0.25023 * 7 6 5 9 9 C 1.53000 * 109.47004 * 120.25480 * 7 6 5 10 10 C 1.53002 * 109.46893 * 240.25167 * 7 6 5 11 11 C 1.50700 * 109.47205 * 175.00128 * 10 7 6 12 12 H 1.08005 * 119.99607 * 0.02562 * 11 10 7 13 13 C 1.37871 * 120.00414 * 180.02562 * 11 10 7 14 14 N 1.31519 * 120.00000 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00415 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46909 * 59.99647 * 15 13 11 17 17 H 1.48496 * 109.47609 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47052 * 300.00147 * 15 13 11 19 19 N 1.30297 * 107.30324 * 180.22739 * 6 5 4 20 20 N 1.28522 * 110.05425 * 359.77363 * 19 6 5 21 21 C 1.31212 * 109.86388 * 359.97438 * 20 19 6 22 22 N 1.38579 * 126.47602 * 179.97438 * 21 20 19 23 23 C 1.47021 * 111.03514 * 272.35070 * 22 21 20 24 24 C 1.53104 * 109.29417 * 182.35263 * 23 22 21 25 25 O 1.43015 * 109.25282 * 303.16785 * 24 23 22 26 26 C 1.43021 * 113.73872 * 58.67262 * 25 24 23 27 27 H 1.09004 * 109.53990 * 61.28519 * 26 25 24 28 28 C 1.53000 * 109.50606 * 181.39057 * 26 25 24 29 29 C 1.47016 * 111.00252 * 36.00613 * 22 21 20 30 30 H 1.08996 * 109.47326 * 300.00421 * 1 2 3 31 31 H 1.08999 * 109.46593 * 60.00423 * 1 2 3 32 32 H 1.08991 * 109.47281 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47695 * 59.99551 * 3 2 1 34 34 H 1.09007 * 109.46789 * 299.99562 * 3 2 1 35 35 H 1.08998 * 109.47257 * 60.00037 * 4 3 2 36 36 H 1.09000 * 109.46827 * 299.99189 * 4 3 2 37 37 H 1.08998 * 109.47267 * 59.99981 * 9 7 6 38 38 H 1.08999 * 109.47125 * 180.02562 * 9 7 6 39 39 H 1.08998 * 109.46958 * 299.99548 * 9 7 6 40 40 H 1.09003 * 109.47364 * 295.00410 * 10 7 6 41 41 H 1.09004 * 109.47104 * 55.00143 * 10 7 6 42 42 H 0.96997 * 120.00161 * 180.02562 * 14 13 11 43 43 H 1.08993 * 109.47299 * 62.41399 * 23 22 21 44 44 H 1.09007 * 109.53886 * 302.32606 * 23 22 21 45 45 H 1.09000 * 109.50601 * 183.23853 * 24 23 22 46 46 H 1.08993 * 109.54205 * 63.12422 * 24 23 22 47 47 H 1.08999 * 109.46924 * 179.78663 * 28 26 25 48 48 H 1.09004 * 109.47089 * 299.78563 * 28 26 25 49 49 H 1.08998 * 109.46890 * 59.78401 * 28 26 25 50 50 H 1.08997 * 109.50299 * 57.67380 * 29 22 21 51 51 H 1.09001 * 109.50651 * 297.58801 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 4.1314 2.5229 0.0000 6 6 4.4495 3.2844 -1.0902 7 6 4.2511 2.9031 -2.5346 8 1 3.8029 1.9112 -2.5903 9 6 3.3265 3.9193 -3.2079 10 6 5.6038 2.8924 -3.2496 11 6 5.4225 2.3932 -4.6599 12 1 4.4407 2.1121 -5.0113 13 6 6.5101 2.2952 -5.5017 14 7 7.7056 2.6379 -5.0740 15 14 6.2856 1.6758 -7.2496 16 1 5.3494 2.5712 -7.9756 17 1 7.5983 1.6654 -7.9436 18 1 5.7302 0.2988 -7.2193 19 7 4.9597 4.3991 -0.6488 20 7 4.9811 4.3956 0.6363 21 6 4.4810 3.2695 1.0874 22 7 4.3406 2.9046 2.4169 23 6 5.5590 2.2507 2.9161 24 6 5.3399 1.8126 4.3667 25 8 4.9750 2.9501 5.1529 26 6 3.7916 3.6103 4.6957 27 1 2.9478 2.9220 4.7452 28 6 3.5111 4.8268 5.5803 29 6 3.9949 4.0666 3.2486 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6887 1.8464 0.8899 34 1 1.6887 1.8463 -0.8901 35 1 3.8575 0.6435 -0.8891 36 1 3.8567 0.6439 0.8909 37 1 3.7748 4.9112 -3.1523 38 1 3.1826 3.6432 -4.2525 39 1 2.3628 3.9269 -2.6986 40 1 6.0113 3.9031 -3.2715 41 1 6.2911 2.2350 -2.7170 42 1 8.4707 2.5693 -5.6663 43 1 6.3926 2.9514 2.8695 44 1 5.7823 1.3781 2.3021 45 1 6.2599 1.3791 4.7589 46 1 4.5421 1.0711 4.4070 47 1 2.6112 5.3316 5.2290 48 1 3.3664 4.5013 6.6105 49 1 4.3558 5.5139 5.5316 50 1 3.0757 4.5194 2.8771 51 1 4.8030 4.7969 3.2074 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772286671.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:14 Heat of formation + Delta-G solvation = -10.364633 kcal Electronic energy + Delta-G solvation = -30939.181906 eV Core-core repulsion = 26875.374433 eV Total energy + Delta-G solvation = -4063.807473 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.77479 -39.89217 -38.23091 -36.24007 -35.39314 -34.66650 -33.12248 -32.23120 -29.94433 -29.62273 -28.11380 -26.98850 -26.59583 -25.94953 -24.23309 -23.68624 -23.19888 -22.14806 -21.01425 -20.41045 -19.14122 -17.51327 -16.89924 -16.77452 -16.53424 -16.24180 -16.13587 -15.73494 -15.49560 -15.19186 -14.94087 -14.69710 -14.48173 -14.28919 -13.97216 -13.46960 -13.26403 -12.97319 -12.62396 -12.55688 -12.41600 -12.24967 -11.89201 -11.80903 -11.78152 -11.61813 -11.47904 -11.34435 -11.11727 -10.95537 -10.94430 -10.80149 -10.53738 -10.38773 -10.11138 -9.98340 -9.97349 -9.90399 -9.62318 -9.17022 -9.10003 -8.38597 -8.32040 -6.02181 -4.06180 1.91937 2.21158 3.17422 3.30487 3.31358 3.36766 3.38006 3.45536 3.82591 4.42124 4.46796 4.52760 4.59565 4.71445 4.73451 4.83532 4.88953 4.91957 5.04751 5.07781 5.10245 5.12184 5.20917 5.25155 5.29713 5.33080 5.35814 5.40155 5.42470 5.48368 5.55900 5.58952 5.66395 5.77759 5.90075 5.97649 6.01855 6.14289 6.22816 6.43049 6.63824 6.71631 6.80027 6.84544 6.87366 6.98961 7.30952 7.58778 7.74882 7.96070 8.32047 8.98882 9.08827 9.57552 11.08829 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012360 B = 0.003122 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.895069 B = 8967.329283 C =10158.615290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.386 6.386 3 C 0.053 3.947 4 C 0.116 3.884 5 N -0.469 5.469 6 C 0.223 3.777 7 C -0.004 4.004 8 H 0.074 0.926 9 C -0.125 4.125 10 C 0.039 3.961 11 C -0.522 4.522 12 H 0.058 0.942 13 C 0.060 3.940 14 N -0.890 5.890 15 Si 0.892 3.108 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.277 1.277 19 N -0.283 5.283 20 N -0.309 5.309 21 C 0.321 3.679 22 N -0.458 5.458 23 C 0.022 3.978 24 C 0.069 3.931 25 O -0.380 6.380 26 C 0.091 3.909 27 H 0.067 0.933 28 C -0.144 4.144 29 C 0.040 3.960 30 H 0.041 0.959 31 H 0.044 0.956 32 H 0.089 0.911 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.108 0.892 36 H 0.102 0.898 37 H 0.061 0.939 38 H 0.076 0.924 39 H 0.030 0.970 40 H 0.032 0.968 41 H 0.014 0.986 42 H 0.262 0.738 43 H 0.060 0.940 44 H 0.088 0.912 45 H 0.105 0.895 46 H 0.061 0.939 47 H 0.073 0.927 48 H 0.067 0.933 49 H 0.066 0.934 50 H 0.088 0.912 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.201 -3.486 19.406 23.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.304 6.304 3 C -0.025 4.025 4 C -0.008 4.008 5 N -0.164 5.164 6 C -0.044 4.044 7 C -0.025 4.025 8 H 0.092 0.908 9 C -0.183 4.183 10 C 0.001 3.999 11 C -0.560 4.560 12 H 0.076 0.924 13 C -0.142 4.142 14 N -0.529 5.529 15 Si 0.720 3.280 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.203 1.203 19 N -0.121 5.121 20 N -0.153 5.153 21 C -0.035 4.035 22 N -0.183 5.183 23 C -0.106 4.106 24 C -0.008 4.008 25 O -0.299 6.299 26 C 0.033 3.967 27 H 0.085 0.915 28 C -0.202 4.202 29 C -0.088 4.088 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.107 0.893 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.126 0.874 36 H 0.120 0.880 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.049 0.951 40 H 0.051 0.949 41 H 0.032 0.968 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.106 0.894 45 H 0.123 0.877 46 H 0.080 0.920 47 H 0.092 0.908 48 H 0.086 0.914 49 H 0.085 0.915 50 H 0.106 0.894 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.558 -2.547 19.566 23.389 hybrid contribution -0.302 -1.099 -1.271 1.707 sum -12.860 -3.646 18.295 22.658 Atomic orbital electron populations 1.22761 0.80281 1.02969 1.00219 1.87800 1.20266 1.26817 1.95536 1.22704 0.92886 0.85397 1.01464 1.21475 0.92205 0.80915 1.06161 1.46184 1.47901 1.16099 1.06217 1.25749 0.98299 0.88252 0.92067 1.20057 1.02001 0.98582 0.81899 0.90809 1.21673 0.96283 0.99353 1.00998 1.19104 0.88082 0.98594 0.94098 1.21087 0.94040 1.44213 0.96668 0.92362 1.24996 0.95244 0.95437 0.98524 1.69969 0.98976 1.47716 1.36231 0.86660 0.77312 0.79351 0.84694 1.20142 1.21306 1.20263 1.74085 1.18177 1.18263 1.01590 1.74565 1.18234 1.17941 1.04540 1.22176 1.03239 0.90656 0.87419 1.58819 1.34713 1.28367 0.96413 1.22950 0.90382 1.00000 0.97252 1.22648 1.01358 0.88175 0.88593 1.88009 1.44525 1.43617 1.53718 1.22203 0.87988 0.94860 0.91685 0.91476 1.21741 1.02449 0.96285 0.99703 1.22794 1.02883 0.90852 0.92229 0.94033 0.93726 0.89270 0.92470 0.92332 0.87394 0.87976 0.91956 0.90517 0.95095 0.94930 0.96807 0.92831 0.92139 0.89402 0.87734 0.92037 0.90783 0.91377 0.91469 0.89405 0.91396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.40 16 2 O -0.39 -4.45 10.70 -35.23 -0.38 -4.82 16 3 C 0.05 0.62 6.26 37.16 0.23 0.86 16 4 C 0.12 1.51 6.23 -4.04 -0.03 1.49 16 5 N -0.47 -7.64 2.81 -114.08 -0.32 -7.96 16 6 C 0.22 4.36 6.58 -154.01 -1.01 3.35 16 7 C 0.00 -0.09 2.70 -91.77 -0.25 -0.33 16 8 H 0.07 1.38 6.97 -51.93 -0.36 1.02 16 9 C -0.12 -2.32 8.98 37.16 0.33 -1.98 16 10 C 0.04 1.00 4.43 -27.88 -0.12 0.87 16 11 C -0.52 -14.04 8.41 -34.44 -0.29 -14.33 16 12 H 0.06 1.48 7.06 -52.48 -0.37 1.11 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 15 Si 0.89 21.14 29.54 -169.99 -5.02 16.11 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 N -0.28 -6.13 12.18 32.99 0.40 -5.73 16 20 N -0.31 -6.10 11.63 30.31 0.35 -5.74 16 21 C 0.32 5.26 6.76 -318.88 -2.16 3.11 16 22 N -0.46 -5.89 4.74 -174.20 -0.83 -6.72 16 23 C 0.02 0.25 5.59 -3.70 -0.02 0.23 16 24 C 0.07 0.63 7.01 37.21 0.26 0.89 16 25 O -0.38 -4.07 10.47 -35.23 -0.37 -4.44 16 26 C 0.09 0.86 3.43 -26.68 -0.09 0.76 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 28 C -0.14 -1.08 9.57 37.16 0.36 -0.73 16 29 C 0.04 0.46 4.61 -3.71 -0.02 0.45 16 30 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.11 1.44 7.28 -51.93 -0.38 1.07 16 36 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.08 1.44 6.95 -51.93 -0.36 1.07 16 39 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 51 H 0.07 0.91 7.96 -51.93 -0.41 0.49 16 LS Contribution 412.90 15.07 6.22 6.22 Total: -1.00 -33.01 412.90 -10.04 -43.05 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -9.05 Total: -1.76 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -1.79 Total: -2.38 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: 0.34 Total: -51.98 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: -0.75 Total: -9.26 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.01 -10.04 -43.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772286671.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.682 kcal (2) G-P(sol) polarization free energy of solvation -33.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds