Wall clock time and date at job start Tue Mar 31 2020 22:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00279 * 2 1 4 4 C 1.52998 * 109.47213 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47068 * 179.97438 * 4 3 2 6 6 C 1.36738 * 127.13793 * 271.04091 * 5 4 3 7 7 C 1.50701 * 126.34609 * 0.03514 * 6 5 4 8 8 H 1.08991 * 109.47299 * 0.25023 * 7 6 5 9 9 C 1.53000 * 109.47004 * 120.25480 * 7 6 5 10 10 C 1.53002 * 109.46893 * 240.25167 * 7 6 5 11 11 C 1.50700 * 109.47205 * 175.00128 * 10 7 6 12 12 H 1.08005 * 119.99607 * 0.02562 * 11 10 7 13 13 C 1.37871 * 120.00414 * 180.02562 * 11 10 7 14 14 N 1.31519 * 120.00000 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00415 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46909 * 59.99647 * 15 13 11 17 17 H 1.48496 * 109.47609 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47052 * 300.00147 * 15 13 11 19 19 N 1.30297 * 107.30324 * 180.22739 * 6 5 4 20 20 N 1.28522 * 110.05425 * 359.77363 * 19 6 5 21 21 C 1.31212 * 109.86388 * 359.97438 * 20 19 6 22 22 N 1.38579 * 126.47602 * 179.97438 * 21 20 19 23 23 C 1.47021 * 111.03514 * 272.35070 * 22 21 20 24 24 C 1.53104 * 109.29417 * 182.35263 * 23 22 21 25 25 O 1.43015 * 109.25282 * 303.16785 * 24 23 22 26 26 C 1.43021 * 113.73872 * 58.67262 * 25 24 23 27 27 H 1.09004 * 109.53990 * 61.28519 * 26 25 24 28 28 C 1.53000 * 109.50606 * 181.39057 * 26 25 24 29 29 C 1.47016 * 111.00252 * 36.00613 * 22 21 20 30 30 H 1.08996 * 109.47326 * 300.00421 * 1 2 3 31 31 H 1.08999 * 109.46593 * 60.00423 * 1 2 3 32 32 H 1.08991 * 109.47281 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47695 * 59.99551 * 3 2 1 34 34 H 1.09007 * 109.46789 * 299.99562 * 3 2 1 35 35 H 1.08998 * 109.47257 * 60.00037 * 4 3 2 36 36 H 1.09000 * 109.46827 * 299.99189 * 4 3 2 37 37 H 1.08998 * 109.47267 * 59.99981 * 9 7 6 38 38 H 1.08999 * 109.47125 * 180.02562 * 9 7 6 39 39 H 1.08998 * 109.46958 * 299.99548 * 9 7 6 40 40 H 1.09003 * 109.47364 * 295.00410 * 10 7 6 41 41 H 1.09004 * 109.47104 * 55.00143 * 10 7 6 42 42 H 0.96997 * 120.00161 * 180.02562 * 14 13 11 43 43 H 1.08993 * 109.47299 * 62.41399 * 23 22 21 44 44 H 1.09007 * 109.53886 * 302.32606 * 23 22 21 45 45 H 1.09000 * 109.50601 * 183.23853 * 24 23 22 46 46 H 1.08993 * 109.54205 * 63.12422 * 24 23 22 47 47 H 1.08999 * 109.46924 * 179.78663 * 28 26 25 48 48 H 1.09004 * 109.47089 * 299.78563 * 28 26 25 49 49 H 1.08998 * 109.46890 * 59.78401 * 28 26 25 50 50 H 1.08997 * 109.50299 * 57.67380 * 29 22 21 51 51 H 1.09001 * 109.50651 * 297.58801 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 4.1314 2.5229 0.0000 6 6 4.4495 3.2844 -1.0902 7 6 4.2511 2.9031 -2.5346 8 1 3.8029 1.9112 -2.5903 9 6 3.3265 3.9193 -3.2079 10 6 5.6038 2.8924 -3.2496 11 6 5.4225 2.3932 -4.6599 12 1 4.4407 2.1121 -5.0113 13 6 6.5101 2.2952 -5.5017 14 7 7.7056 2.6379 -5.0740 15 14 6.2856 1.6758 -7.2496 16 1 5.3494 2.5712 -7.9756 17 1 7.5983 1.6654 -7.9436 18 1 5.7302 0.2988 -7.2193 19 7 4.9597 4.3991 -0.6488 20 7 4.9811 4.3956 0.6363 21 6 4.4810 3.2695 1.0874 22 7 4.3406 2.9046 2.4169 23 6 5.5590 2.2507 2.9161 24 6 5.3399 1.8126 4.3667 25 8 4.9750 2.9501 5.1529 26 6 3.7916 3.6103 4.6957 27 1 2.9478 2.9220 4.7452 28 6 3.5111 4.8268 5.5803 29 6 3.9949 4.0666 3.2486 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6887 1.8464 0.8899 34 1 1.6887 1.8463 -0.8901 35 1 3.8575 0.6435 -0.8891 36 1 3.8567 0.6439 0.8909 37 1 3.7748 4.9112 -3.1523 38 1 3.1826 3.6432 -4.2525 39 1 2.3628 3.9269 -2.6986 40 1 6.0113 3.9031 -3.2715 41 1 6.2911 2.2350 -2.7170 42 1 8.4707 2.5693 -5.6663 43 1 6.3926 2.9514 2.8695 44 1 5.7823 1.3781 2.3021 45 1 6.2599 1.3791 4.7589 46 1 4.5421 1.0711 4.4070 47 1 2.6112 5.3316 5.2290 48 1 3.3664 4.5013 6.6105 49 1 4.3558 5.5139 5.5316 50 1 3.0757 4.5194 2.8771 51 1 4.8030 4.7969 3.2074 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772286671.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:13 Heat of formation + Delta-G solvation = -30.505887 kcal Electronic energy + Delta-G solvation = -30940.055297 eV Core-core repulsion = 26875.374433 eV Total energy + Delta-G solvation = -4064.680864 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.18932 -40.79597 -39.09250 -37.47906 -36.81348 -36.04823 -34.24115 -33.87444 -31.01646 -30.86381 -29.31115 -28.75767 -27.36648 -26.90891 -25.96125 -24.79571 -24.09943 -23.76626 -22.13151 -21.51025 -20.63058 -18.73833 -18.48842 -17.91774 -17.62577 -17.29817 -17.11846 -16.76354 -16.58085 -16.35309 -16.21091 -15.89244 -15.63880 -15.46213 -15.15233 -14.95836 -14.48090 -14.31680 -13.76226 -13.66397 -13.46089 -13.20761 -13.05768 -13.02640 -12.87585 -12.76671 -12.73271 -12.67462 -12.45964 -12.32030 -12.30323 -12.20497 -12.02309 -11.80118 -11.60380 -11.50930 -11.26455 -11.17960 -10.85200 -10.76688 -10.54893 -10.38075 -9.72399 -8.16920 -6.28771 0.56204 0.96592 1.43696 1.46803 1.54132 1.68221 2.29507 2.43233 2.72234 2.84933 3.17227 3.35344 3.48392 3.64584 3.69416 3.79100 3.84730 3.90900 4.02946 4.08408 4.11984 4.17947 4.25721 4.35296 4.38041 4.39591 4.45834 4.50058 4.53138 4.56308 4.62798 4.64375 4.74144 4.78879 4.85022 4.88789 4.95047 5.03040 5.06051 5.13181 5.26436 5.30752 5.38935 5.43341 5.45293 5.66401 5.82140 5.97787 6.06801 6.12861 6.19011 6.86565 7.40547 7.62307 8.95357 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012360 B = 0.003122 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.895069 B = 8967.329283 C =10158.615290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.401 6.401 3 C 0.064 3.936 4 C 0.111 3.889 5 N -0.462 5.462 6 C 0.212 3.788 7 C 0.007 3.993 8 H 0.093 0.907 9 C -0.117 4.117 10 C 0.051 3.949 11 C -0.529 4.529 12 H 0.077 0.923 13 C -0.001 4.001 14 N -0.937 5.937 15 Si 0.965 3.035 16 H -0.264 1.264 17 H -0.290 1.290 18 H -0.262 1.262 19 N -0.322 5.322 20 N -0.345 5.345 21 C 0.342 3.658 22 N -0.447 5.447 23 C 0.020 3.980 24 C 0.075 3.925 25 O -0.394 6.394 26 C 0.096 3.904 27 H 0.083 0.917 28 C -0.142 4.142 29 C 0.040 3.960 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.105 0.895 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.104 0.896 36 H 0.120 0.880 37 H 0.042 0.958 38 H 0.075 0.925 39 H 0.062 0.938 40 H -0.009 1.009 41 H -0.021 1.021 42 H 0.262 0.738 43 H 0.037 0.963 44 H 0.093 0.907 45 H 0.125 0.875 46 H 0.080 0.920 47 H 0.088 0.912 48 H 0.079 0.921 49 H 0.056 0.944 50 H 0.090 0.910 51 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.885 -5.415 20.297 26.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.319 6.319 3 C -0.014 4.014 4 C -0.011 4.011 5 N -0.156 5.156 6 C -0.057 4.057 7 C -0.014 4.014 8 H 0.112 0.888 9 C -0.175 4.175 10 C 0.013 3.987 11 C -0.567 4.567 12 H 0.095 0.905 13 C -0.199 4.199 14 N -0.577 5.577 15 Si 0.790 3.210 16 H -0.189 1.189 17 H -0.216 1.216 18 H -0.187 1.187 19 N -0.161 5.161 20 N -0.189 5.189 21 C -0.015 4.015 22 N -0.173 5.173 23 C -0.107 4.107 24 C -0.002 4.002 25 O -0.313 6.313 26 C 0.038 3.962 27 H 0.101 0.899 28 C -0.199 4.199 29 C -0.087 4.087 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.124 0.876 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.122 0.878 36 H 0.138 0.862 37 H 0.061 0.939 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.010 0.990 41 H -0.003 1.003 42 H 0.070 0.930 43 H 0.055 0.945 44 H 0.111 0.889 45 H 0.143 0.857 46 H 0.098 0.902 47 H 0.107 0.893 48 H 0.098 0.902 49 H 0.075 0.925 50 H 0.108 0.892 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -15.277 -4.491 20.472 25.935 hybrid contribution 0.531 -0.527 -1.428 1.612 sum -14.746 -5.017 19.044 24.603 Atomic orbital electron populations 1.22989 0.78538 1.04373 1.01005 1.87777 1.22129 1.26377 1.95644 1.22510 0.91573 0.85762 1.01511 1.21732 0.93412 0.79099 1.06885 1.46241 1.47406 1.16803 1.05173 1.25436 0.99177 0.88583 0.92476 1.19800 0.99221 1.00245 0.82090 0.88848 1.21589 0.97179 0.97646 1.01131 1.18842 0.90321 0.95104 0.94421 1.21531 0.94764 1.43274 0.97134 0.90529 1.26000 0.94832 0.95655 1.03388 1.70143 1.00060 1.49474 1.38021 0.85492 0.77241 0.79433 0.78854 1.18871 1.21623 1.18692 1.73986 1.19337 1.19950 1.02805 1.74485 1.20321 1.20149 1.03918 1.22556 1.00631 0.89554 0.88795 1.59110 1.35018 1.28523 0.94642 1.23069 0.88940 0.99379 0.99358 1.22770 1.03089 0.87968 0.86346 1.88008 1.45127 1.44207 1.53943 1.22299 0.88064 0.95819 0.90037 0.89884 1.21765 1.02712 0.95399 1.00043 1.22893 1.02043 0.90101 0.93706 0.92816 0.93375 0.87640 0.91883 0.92825 0.87791 0.86163 0.93885 0.90572 0.91895 0.99049 1.00271 0.92956 0.94468 0.88894 0.85699 0.90182 0.89277 0.90186 0.92508 0.89168 0.93689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.62 16 2 O -0.40 -8.20 10.70 -148.98 -1.59 -9.79 16 3 C 0.06 1.36 6.26 71.98 0.45 1.81 16 4 C 0.11 2.72 6.23 86.38 0.54 3.26 16 5 N -0.46 -14.94 2.81 -514.85 -1.45 -16.39 16 6 C 0.21 8.47 6.58 137.64 0.91 9.38 16 7 C 0.01 0.30 2.70 -11.54 -0.03 0.27 16 8 H 0.09 3.41 6.97 -2.39 -0.02 3.39 16 9 C -0.12 -4.32 8.98 71.98 0.65 -3.67 16 10 C 0.05 2.73 4.43 29.85 0.13 2.86 16 11 C -0.53 -28.78 8.41 25.60 0.22 -28.56 16 12 H 0.08 3.80 7.06 -2.91 -0.02 3.78 16 13 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 14 N -0.94 -57.79 13.29 21.45 0.28 -57.51 16 15 Si 0.97 43.32 29.54 68.60 2.03 45.34 16 16 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 17 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 18 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 19 N -0.32 -14.60 12.18 -49.53 -0.60 -15.21 16 20 N -0.35 -14.13 11.63 -58.01 -0.67 -14.81 16 21 C 0.34 11.24 6.76 260.11 1.76 12.99 16 22 N -0.45 -11.09 4.74 -705.05 -3.34 -14.44 16 23 C 0.02 0.44 5.59 86.31 0.48 0.92 16 24 C 0.08 1.19 7.01 72.02 0.50 1.70 16 25 O -0.39 -7.65 10.47 -148.98 -1.56 -9.21 16 26 C 0.10 1.61 3.43 30.62 0.10 1.72 16 27 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 28 C -0.14 -1.86 9.57 71.98 0.69 -1.17 16 29 C 0.04 0.90 4.61 86.31 0.40 1.30 16 30 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 35 H 0.10 2.66 7.28 -2.39 -0.02 2.65 16 36 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.08 2.78 6.95 -2.39 -0.02 2.76 16 39 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 40 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 41 H -0.02 -1.25 8.14 -2.38 -0.02 -1.27 16 42 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 43 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.09 1.95 8.14 -2.38 -0.02 1.94 16 45 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 50 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 51 H 0.04 1.23 7.96 -2.39 -0.02 1.21 16 Total: -1.00 -74.62 412.90 2.48 -72.14 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: 0.89 Total: 15.04 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: 8.50 Total: 4.83 kcal Atomic # 7 Polarization: -112.56 SS G_CDS: -5.78 Total: -118.35 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -3.15 Total: -19.00 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Total: -74.62 2.48 -72.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772286671.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.634 kcal (2) G-P(sol) polarization free energy of solvation -74.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds