Wall clock time and date at job start Tue Mar 31 2020 22:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42908 * 113.99719 * 2 1 4 4 C 1.53004 * 109.47070 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.46890 * 178.42274 * 4 3 2 6 6 C 1.36737 * 127.13339 * 84.88097 * 5 4 3 7 7 C 1.50694 * 126.35382 * 359.97438 * 6 5 4 8 8 C 1.52997 * 109.47251 * 89.99725 * 7 6 5 9 9 H 1.08999 * 109.46969 * 55.00370 * 8 7 6 10 10 O 1.42906 * 109.47366 * 295.00399 * 8 7 6 11 11 C 1.50707 * 109.47288 * 175.00355 * 8 7 6 12 12 H 1.08001 * 119.99777 * 0.02562 * 11 8 7 13 13 C 1.37874 * 120.00131 * 180.02562 * 11 8 7 14 14 N 1.31515 * 119.99998 * 359.97438 * 13 11 8 15 15 Si 1.86798 * 119.99900 * 180.02562 * 13 11 8 16 16 H 1.48494 * 109.47070 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47329 * 119.99978 * 15 13 11 18 18 H 1.48496 * 109.46803 * 239.99829 * 15 13 11 19 19 N 1.30294 * 107.29884 * 180.26049 * 6 5 4 20 20 N 1.28525 * 110.05583 * 359.55988 * 19 6 5 21 21 C 1.31219 * 109.86100 * 0.45196 * 20 19 6 22 22 N 1.38578 * 126.47252 * 179.72989 * 21 20 19 23 23 C 1.46893 * 110.99908 * 294.84522 * 22 21 20 24 24 C 1.46904 * 110.99962 * 58.80146 * 22 21 20 25 25 H 1.08998 * 109.46580 * 288.39866 * 24 22 21 26 26 C 1.52997 * 109.47091 * 48.39607 * 24 22 21 27 27 C 1.53000 * 109.47008 * 168.39473 * 24 22 21 28 28 C 1.52992 * 117.50191 * 249.94682 * 27 24 22 29 29 C 1.52997 * 117.49998 * 181.28509 * 27 24 22 30 30 H 1.09009 * 109.46865 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47360 * 299.99686 * 1 2 3 32 32 H 1.08997 * 109.47376 * 60.00155 * 1 2 3 33 33 H 1.08997 * 109.47137 * 60.00283 * 3 2 1 34 34 H 1.09000 * 109.47010 * 300.00269 * 3 2 1 35 35 H 1.08997 * 109.47041 * 58.42133 * 4 3 2 36 36 H 1.09006 * 109.46874 * 298.42021 * 4 3 2 37 37 H 1.09007 * 109.46921 * 330.00152 * 7 6 5 38 38 H 1.08998 * 109.47319 * 210.00097 * 7 6 5 39 39 H 0.96705 * 113.99571 * 299.99736 * 10 8 7 40 40 H 0.96999 * 120.00289 * 180.02562 * 14 13 11 41 41 H 1.08998 * 109.47361 * 67.26806 * 23 22 21 42 42 H 1.09006 * 109.46791 * 187.26374 * 23 22 21 43 43 H 1.09001 * 109.47091 * 307.25825 * 23 22 21 44 44 H 1.09000 * 109.46737 * 180.02562 * 26 24 22 45 45 H 1.08999 * 109.47290 * 299.99800 * 26 24 22 46 46 H 1.09003 * 109.47444 * 60.00247 * 26 24 22 47 47 H 1.09000 * 115.54740 * 35.62175 * 27 24 22 48 48 H 1.09001 * 117.49806 * 359.97438 * 28 27 24 49 49 H 1.09005 * 117.50036 * 145.01874 * 28 27 24 50 50 H 1.08995 * 117.49924 * 214.98552 * 29 27 24 51 51 H 1.09000 * 117.49848 * 359.97438 * 29 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 4.1311 2.5227 -0.0387 6 6 4.3807 3.3457 1.0244 7 6 4.0920 3.0464 2.4728 8 6 5.3069 2.3640 3.1046 9 1 6.1902 2.9853 2.9570 10 8 5.5119 1.0907 2.4890 11 6 5.0663 2.1755 4.5804 12 1 4.1393 2.5087 5.0232 13 6 6.0295 1.5777 5.3651 14 7 7.1581 1.1715 4.8257 15 14 5.7309 1.3435 7.1941 16 1 4.3935 1.8815 7.5502 17 1 5.7866 -0.1034 7.5235 18 1 6.7756 2.0667 7.9628 19 7 4.9088 4.4392 0.5522 20 7 5.0175 4.3599 -0.7259 21 6 4.5520 3.2059 -1.1423 22 7 4.4979 2.7645 -2.4548 23 6 3.5824 3.5923 -3.2512 24 6 5.8381 2.7343 -3.0556 25 1 6.1809 3.7541 -3.2304 26 6 6.8068 2.0264 -2.1063 27 6 5.7840 1.9794 -4.3853 28 6 6.4638 0.6103 -4.4485 29 6 7.0948 1.8118 -5.1564 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6885 1.8464 0.8900 34 1 1.6884 1.8465 -0.8900 35 1 3.8548 0.6198 -0.8763 36 1 3.8594 0.6684 0.9030 37 1 3.2275 2.3859 2.5421 38 1 3.8820 3.9763 3.0012 39 1 4.7641 0.4844 2.5811 40 1 7.8356 0.7506 5.3777 41 1 3.9947 4.5962 -3.3519 42 1 3.4590 3.1494 -4.2396 43 1 2.6142 3.6452 -2.7534 44 1 7.8013 2.0044 -2.5519 45 1 6.8454 2.5642 -1.1590 46 1 6.4640 1.0065 -1.9314 47 1 4.8721 2.1159 -4.9665 48 1 6.9500 0.2475 -3.5429 49 1 5.9993 -0.1540 -5.0717 50 1 7.0451 1.8377 -6.2449 51 1 7.9956 2.2398 -4.7167 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772295167.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:28 Heat of formation + Delta-G solvation = 1.790935 kcal Electronic energy + Delta-G solvation = -31453.297247 eV Core-core repulsion = 27390.016879 eV Total energy + Delta-G solvation = -4063.280368 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.08498 -40.08418 -39.07511 -38.11082 -37.06049 -36.07120 -34.26355 -33.01240 -31.52066 -30.88996 -29.91084 -27.53120 -27.17633 -26.37598 -25.79769 -24.57338 -23.57880 -23.20300 -22.02834 -21.43019 -20.07892 -19.18595 -18.47028 -17.84992 -17.51420 -17.09934 -16.84611 -16.68969 -16.64142 -16.46574 -15.98481 -15.72962 -15.54543 -15.25676 -14.87401 -14.69929 -14.59758 -14.29100 -13.86434 -13.38406 -13.33329 -13.27214 -13.03526 -12.93133 -12.83050 -12.68271 -12.66998 -12.59797 -12.48885 -12.28568 -12.13194 -12.02100 -11.98788 -11.61619 -11.33311 -11.25283 -11.04927 -10.94862 -10.74531 -10.71934 -10.46766 -9.87722 -9.78028 -8.13393 -6.39656 0.69231 1.13305 1.42326 1.44501 1.55982 1.75821 2.39782 2.40874 2.88214 3.07049 3.13333 3.41806 3.61199 3.62759 3.83014 3.86187 3.95283 3.98053 4.10862 4.14170 4.17204 4.22464 4.25837 4.28166 4.40409 4.49212 4.50693 4.51970 4.57232 4.58927 4.63171 4.69924 4.76330 4.84233 4.85990 4.87005 4.88129 4.93108 5.01781 5.14151 5.14959 5.29922 5.33147 5.54405 5.61399 5.68298 5.70325 6.02243 6.04602 6.22718 6.71866 7.31849 7.49018 7.69179 8.91506 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.010832 B = 0.003603 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.408836 B = 7769.925768 C = 8880.812368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.401 6.401 3 C 0.064 3.936 4 C 0.115 3.885 5 N -0.449 5.449 6 C 0.211 3.789 7 C -0.048 4.048 8 C 0.245 3.755 9 H 0.012 0.988 10 O -0.573 6.573 11 C -0.581 4.581 12 H 0.071 0.929 13 C 0.027 3.973 14 N -0.900 5.900 15 Si 0.961 3.039 16 H -0.258 1.258 17 H -0.279 1.279 18 H -0.285 1.285 19 N -0.334 5.334 20 N -0.346 5.346 21 C 0.351 3.649 22 N -0.455 5.455 23 C 0.035 3.965 24 C 0.129 3.871 25 H 0.050 0.950 26 C -0.144 4.144 27 C -0.145 4.145 28 C -0.179 4.179 29 C -0.168 4.168 30 H 0.104 0.896 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.113 0.887 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.355 0.645 40 H 0.260 0.740 41 H 0.036 0.964 42 H 0.114 0.886 43 H 0.067 0.933 44 H 0.079 0.921 45 H 0.015 0.985 46 H 0.066 0.934 47 H 0.126 0.874 48 H 0.089 0.911 49 H 0.107 0.893 50 H 0.114 0.886 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.972 -3.037 -19.520 23.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.319 6.319 3 C -0.014 4.014 4 C -0.008 4.008 5 N -0.142 5.142 6 C -0.057 4.057 7 C -0.088 4.088 8 C 0.186 3.814 9 H 0.029 0.971 10 O -0.378 6.378 11 C -0.619 4.619 12 H 0.089 0.911 13 C -0.176 4.176 14 N -0.537 5.537 15 Si 0.786 3.214 16 H -0.182 1.182 17 H -0.205 1.205 18 H -0.211 1.211 19 N -0.174 5.174 20 N -0.189 5.189 21 C -0.006 4.006 22 N -0.182 5.182 23 C -0.112 4.112 24 C 0.022 3.978 25 H 0.068 0.932 26 C -0.201 4.201 27 C -0.163 4.163 28 C -0.216 4.216 29 C -0.206 4.206 30 H 0.123 0.877 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.131 0.869 36 H 0.120 0.880 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.201 0.799 40 H 0.069 0.931 41 H 0.055 0.945 42 H 0.132 0.868 43 H 0.086 0.914 44 H 0.098 0.902 45 H 0.034 0.966 46 H 0.085 0.915 47 H 0.144 0.856 48 H 0.107 0.893 49 H 0.126 0.874 50 H 0.133 0.867 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.723 -2.118 -19.705 22.534 hybrid contribution -0.491 -0.382 1.508 1.631 sum -11.213 -2.500 -18.198 21.521 Atomic orbital electron populations 1.22991 0.78612 1.04347 1.00982 1.87801 1.22068 1.26411 1.95615 1.22540 0.91754 0.85754 1.01319 1.21664 0.92783 0.79630 1.06729 1.46084 1.46328 1.16030 1.05715 1.25142 0.99834 0.87708 0.93025 1.20928 1.01142 1.03275 0.83485 1.19061 0.90661 0.81405 0.90264 0.97053 1.86597 1.45168 1.27053 1.78934 1.22000 1.03727 1.41895 0.94238 0.91095 1.25901 0.94367 0.94198 1.03109 1.70239 1.07382 1.38925 1.37186 0.85483 0.78648 0.77754 0.79526 1.18160 1.20495 1.21096 1.73937 1.19217 1.21426 1.02788 1.74421 1.21874 1.17926 1.04711 1.22406 1.00295 0.88819 0.89088 1.58929 1.12444 1.51853 0.94936 1.22542 0.94746 0.95188 0.98709 1.21146 0.85200 0.98320 0.93118 0.93214 1.21941 0.99839 1.00654 0.97693 1.22156 0.98495 1.00026 0.95625 1.23163 1.03921 0.91507 1.02973 1.23076 0.95551 1.02001 0.99964 0.87722 0.93344 0.92803 0.92714 0.92102 0.86915 0.87993 0.88417 0.88422 0.79931 0.93078 0.94543 0.86770 0.91385 0.90245 0.96566 0.91532 0.85588 0.89273 0.87446 0.86733 0.89320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 16 2 O -0.40 -8.99 10.70 -148.98 -1.59 -10.58 16 3 C 0.06 1.47 6.26 71.98 0.45 1.92 16 4 C 0.11 3.17 6.22 86.38 0.54 3.71 16 5 N -0.45 -15.10 2.81 -514.85 -1.45 -16.54 16 6 C 0.21 8.46 7.09 137.64 0.98 9.43 16 7 C -0.05 -1.92 5.14 29.85 0.15 -1.76 16 8 C 0.24 12.27 2.81 29.85 0.08 12.35 16 9 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 10 O -0.57 -28.17 11.57 -148.98 -1.72 -29.89 16 11 C -0.58 -30.60 8.76 25.60 0.22 -30.37 16 12 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 13 C 0.03 1.47 5.40 84.65 0.46 1.92 16 14 N -0.90 -53.54 12.84 21.45 0.28 -53.27 16 15 Si 0.96 42.44 29.54 68.60 2.03 44.46 16 16 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 17 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 19 N -0.33 -14.87 12.18 -49.54 -0.60 -15.47 16 20 N -0.35 -14.04 12.00 -58.01 -0.70 -14.74 16 21 C 0.35 11.75 4.60 260.12 1.20 12.95 16 22 N -0.46 -11.58 4.63 -706.82 -3.27 -14.85 16 23 C 0.03 0.68 9.30 127.69 1.19 1.87 16 24 C 0.13 3.14 2.42 44.91 0.11 3.25 16 25 H 0.05 1.35 8.07 -2.39 -0.02 1.33 16 26 C -0.14 -4.16 7.44 71.98 0.54 -3.62 16 27 C -0.14 -2.47 5.71 -10.80 -0.06 -2.53 16 28 C -0.18 -2.91 9.59 30.61 0.29 -2.62 16 29 C -0.17 -2.49 9.89 30.62 0.30 -2.19 16 30 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.05 0.67 8.14 -2.39 -0.02 0.66 16 33 H 0.05 1.27 7.85 -2.39 -0.02 1.25 16 34 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.11 2.96 8.11 -2.39 -0.02 2.94 16 36 H 0.10 3.05 5.61 -2.38 -0.01 3.04 16 37 H 0.10 3.31 7.68 -2.38 -0.02 3.29 16 38 H 0.10 3.85 8.14 -2.39 -0.02 3.83 16 39 H 0.35 14.94 7.69 -74.05 -0.57 14.37 16 40 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 41 H 0.04 0.79 8.09 -2.39 -0.02 0.77 16 42 H 0.11 1.47 6.52 -2.38 -0.02 1.46 16 43 H 0.07 1.32 8.09 -2.39 -0.02 1.30 16 44 H 0.08 2.01 7.05 -2.39 -0.02 1.99 16 45 H 0.02 0.59 6.84 -2.39 -0.02 0.57 16 46 H 0.07 1.90 6.91 -2.39 -0.02 1.88 16 47 H 0.13 1.72 6.51 -2.39 -0.02 1.70 16 48 H 0.09 1.71 5.86 -2.39 -0.01 1.70 16 49 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16 50 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 51 H 0.09 1.43 7.53 -2.39 -0.02 1.42 16 Total: -1.00 -71.82 408.82 1.02 -70.80 By element: Atomic # 1 Polarization: 33.76 SS G_CDS: 0.36 Total: 34.12 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: 7.69 Total: 5.96 kcal Atomic # 7 Polarization: -109.12 SS G_CDS: -5.74 Total: -114.87 kcal Atomic # 8 Polarization: -37.16 SS G_CDS: -3.32 Total: -40.47 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Total: -71.82 1.02 -70.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772295167.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.588 kcal (2) G-P(sol) polarization free energy of solvation -71.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds