Wall clock time and date at job start Tue Mar 31 2020 22:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46970 * 2 1 4 4 C 1.52995 * 109.47052 * 120.00158 * 2 1 3 5 5 N 1.46502 * 109.47383 * 173.50936 * 4 2 1 6 6 C 1.36460 * 127.13586 * 87.21234 * 5 4 2 7 7 N 1.38575 * 126.47286 * 0.02562 * 6 5 4 8 8 C 1.46896 * 111.00279 * 71.12055 * 7 6 5 9 9 C 1.46894 * 110.99997 * 195.07666 * 7 6 5 10 10 H 1.09002 * 109.47346 * 54.99920 * 9 7 6 11 11 C 1.53002 * 109.47120 * 294.99788 * 9 7 6 12 12 C 1.50698 * 109.47481 * 175.00106 * 9 7 6 13 13 H 1.08002 * 120.00226 * 359.97438 * 12 9 7 14 14 C 1.37876 * 120.00097 * 180.02562 * 12 9 7 15 15 N 1.31515 * 120.00460 * 359.97438 * 14 12 9 16 16 Si 1.86802 * 119.99927 * 180.02562 * 14 12 9 17 17 H 1.48506 * 109.47178 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47436 * 119.99716 * 16 14 12 19 19 H 1.48499 * 109.47255 * 239.99620 * 16 14 12 20 20 N 1.31213 * 107.05181 * 179.97438 * 6 5 4 21 21 N 1.28532 * 109.86180 * 359.73244 * 20 6 5 22 22 C 1.30297 * 110.04934 * 0.44812 * 21 20 6 23 23 C 1.50699 * 126.34479 * 179.82241 * 22 21 20 24 24 O 1.42906 * 110.75432 * 236.41928 * 23 22 21 25 25 C 1.55309 * 111.02510 * 0.02562 * 23 22 21 26 26 C 1.54949 * 100.94507 * 152.40074 * 25 23 22 27 27 O 1.43649 * 105.13487 * 323.55678 * 26 25 23 28 28 C 1.43239 * 109.97117 * 24.42884 * 27 26 25 29 29 H 1.08997 * 109.47632 * 300.00250 * 1 2 3 30 30 H 1.09001 * 109.47165 * 60.00021 * 1 2 3 31 31 H 1.09001 * 109.47080 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47298 * 240.00091 * 2 1 3 33 33 H 1.08996 * 109.47009 * 298.47621 * 3 2 1 34 34 H 1.09003 * 109.47114 * 58.48008 * 3 2 1 35 35 H 1.09001 * 109.46677 * 178.48159 * 3 2 1 36 36 H 1.08999 * 109.47133 * 53.50354 * 4 2 1 37 37 H 1.09004 * 109.47103 * 293.50553 * 4 2 1 38 38 H 1.09006 * 109.47193 * 62.96362 * 8 7 6 39 39 H 1.09000 * 109.47465 * 182.96224 * 8 7 6 40 40 H 1.08998 * 109.47308 * 302.96645 * 8 7 6 41 41 H 1.08995 * 109.47486 * 300.00332 * 11 9 7 42 42 H 1.08999 * 109.46979 * 59.99968 * 11 9 7 43 43 H 1.08995 * 109.47563 * 179.97438 * 11 9 7 44 44 H 0.96989 * 120.00146 * 180.02562 * 15 14 12 45 45 H 0.96699 * 113.99705 * 297.98596 * 24 23 22 46 46 H 1.09000 * 111.12521 * 270.32638 * 25 23 22 47 47 H 1.09001 * 111.12322 * 34.47985 * 25 23 22 48 48 H 1.08994 * 110.30902 * 204.64355 * 26 25 23 49 49 H 1.09000 * 110.30869 * 82.47051 * 26 25 23 50 50 H 1.08997 * 109.82974 * 238.77165 * 28 27 26 51 51 H 1.09004 * 109.90611 * 117.84260 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.4967 -0.8580 1.1737 6 6 4.4315 0.0453 1.5889 7 7 4.1841 1.2793 2.1687 8 6 3.6631 1.1249 3.5335 9 6 5.3903 2.1176 2.1574 10 1 5.7657 2.2004 1.1374 11 6 6.4618 1.4815 3.0452 12 6 5.0534 3.4898 2.6815 13 1 4.0441 3.7166 2.9917 14 6 6.0335 4.4560 2.7641 15 7 7.2626 4.1800 2.3860 16 14 5.6161 6.1566 3.4145 17 1 4.1754 6.2105 3.7709 18 1 6.4355 6.4405 4.6200 19 1 5.9053 7.1711 2.3693 20 7 5.6089 -0.4760 1.3364 21 7 5.4673 -1.6361 0.8015 22 6 4.2015 -1.9173 0.6733 23 6 3.6219 -3.1792 0.0878 24 8 2.7428 -2.8766 -0.9975 25 6 4.7457 -4.1506 -0.3655 26 6 4.0291 -5.5169 -0.2221 27 8 3.1981 -5.3843 0.9421 28 6 2.8935 -4.0035 1.1710 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6991 1.9484 -0.9033 34 1 1.6546 1.9642 0.8761 35 1 3.1297 1.4426 0.0272 36 1 1.5848 -1.7098 1.3092 37 1 1.7747 -0.1447 2.1354 38 1 4.4144 0.6394 4.1564 39 1 3.4281 2.1061 3.9460 40 1 2.7604 0.5145 3.5109 41 1 6.0864 1.3987 4.0651 42 1 6.7055 0.4891 2.6661 43 1 7.3570 2.1033 3.0364 44 1 7.9521 4.8596 2.4445 45 1 1.9756 -2.3445 -0.7456 46 1 5.0325 -3.9640 -1.4004 47 1 5.6093 -4.0885 0.2968 48 1 4.7588 -6.3135 -0.0773 49 1 3.4181 -5.7178 -1.1021 50 1 3.2438 -3.7065 2.1595 51 1 1.8178 -3.8434 1.0966 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772336556.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:23 Heat of formation + Delta-G solvation = 9.227457 kcal Electronic energy + Delta-G solvation = -32476.031634 eV Core-core repulsion = 28413.073737 eV Total energy + Delta-G solvation = -4062.957896 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.81507 -39.95020 -37.45927 -37.23838 -36.17507 -33.29762 -32.80183 -31.87789 -29.94778 -28.79792 -28.38671 -27.19903 -26.99874 -25.26560 -25.20307 -23.11261 -22.78298 -21.53789 -21.14832 -20.01587 -19.53432 -18.05872 -17.01212 -16.54384 -16.08142 -16.00620 -15.88555 -15.46855 -15.31333 -14.86004 -14.64975 -14.40779 -14.03732 -13.80101 -13.48220 -13.26919 -13.14540 -13.01573 -12.61853 -12.44086 -12.15261 -12.01000 -11.71464 -11.63081 -11.56745 -11.47243 -11.36723 -11.27093 -11.01571 -10.94546 -10.89379 -10.80729 -10.70663 -10.46475 -10.22966 -10.09299 -9.85355 -9.81541 -9.77815 -8.98811 -8.82324 -8.44653 -7.54354 -6.07098 -4.14602 1.97673 2.44263 3.17036 3.25083 3.33247 3.35382 3.52094 3.75020 3.81560 4.22934 4.26981 4.36438 4.51540 4.51971 4.58876 4.80233 4.88523 4.98254 5.04309 5.10367 5.23399 5.24848 5.29930 5.39632 5.48544 5.54550 5.59989 5.65260 5.71789 5.74259 5.86970 5.92007 6.00191 6.04724 6.07803 6.19302 6.25423 6.40899 6.61448 6.66839 6.71991 6.88013 7.07046 7.09647 7.27359 7.42043 7.60322 7.69870 7.91138 8.26575 8.40696 8.86866 9.19235 9.50268 10.99068 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.016771 B = 0.003660 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.145300 B = 7648.720955 C = 8650.695978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.115 4.115 3 C -0.144 4.144 4 C 0.106 3.894 5 N -0.478 5.478 6 C 0.395 3.605 7 N -0.451 5.451 8 C 0.035 3.965 9 C 0.229 3.771 10 H 0.048 0.952 11 C -0.180 4.180 12 C -0.513 4.513 13 H 0.064 0.936 14 C 0.064 3.936 15 N -0.883 5.883 16 Si 0.898 3.102 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 N -0.310 5.310 21 N -0.265 5.265 22 C 0.120 3.880 23 C 0.196 3.804 24 O -0.538 6.538 25 C -0.126 4.126 26 C 0.051 3.949 27 O -0.375 6.375 28 C 0.034 3.966 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.050 0.950 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.038 0.962 39 H 0.095 0.905 40 H 0.043 0.957 41 H 0.021 0.979 42 H 0.052 0.948 43 H 0.088 0.912 44 H 0.262 0.738 45 H 0.375 0.625 46 H 0.100 0.900 47 H 0.109 0.891 48 H 0.092 0.908 49 H 0.067 0.933 50 H 0.081 0.919 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.557 -14.297 -3.535 20.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.134 4.134 3 C -0.201 4.201 4 C -0.017 4.017 5 N -0.174 5.174 6 C 0.040 3.960 7 N -0.175 5.175 8 C -0.112 4.112 9 C 0.125 3.875 10 H 0.066 0.934 11 C -0.240 4.240 12 C -0.551 4.551 13 H 0.082 0.918 14 C -0.139 4.139 15 N -0.521 5.521 16 Si 0.726 3.274 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.210 1.210 20 N -0.154 5.154 21 N -0.106 5.106 22 C -0.148 4.148 23 C 0.152 3.848 24 O -0.344 6.344 25 C -0.164 4.164 26 C -0.025 4.025 27 O -0.294 6.294 28 C -0.044 4.044 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.122 0.878 38 H 0.056 0.944 39 H 0.113 0.887 40 H 0.061 0.939 41 H 0.040 0.960 42 H 0.071 0.929 43 H 0.106 0.894 44 H 0.072 0.928 45 H 0.225 0.775 46 H 0.118 0.882 47 H 0.128 0.872 48 H 0.110 0.890 49 H 0.086 0.914 50 H 0.099 0.901 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.892 -14.591 -4.099 19.265 hybrid contribution -1.410 1.553 1.000 2.324 sum -13.302 -13.038 -3.099 18.882 Atomic orbital electron populations 1.21810 0.93800 1.01751 1.02941 1.21608 0.96303 0.98939 0.96572 1.21838 1.03289 0.93183 1.01774 1.22133 0.76394 1.01759 1.01410 1.46216 1.07783 1.15727 1.47648 1.23285 0.83979 0.89832 0.98923 1.59480 1.35840 1.03697 1.18531 1.22375 0.97621 1.03316 0.87887 1.19367 0.81392 0.89088 0.97634 0.93423 1.22564 1.03130 1.00682 0.97581 1.21035 0.95789 0.94802 1.43499 0.91794 1.24887 0.94889 0.98732 0.95345 1.69927 1.01273 1.33881 1.47041 0.86448 0.78390 0.84042 0.78521 1.19777 1.21056 1.21006 1.74953 1.18549 1.02559 1.19386 1.73934 1.13337 1.09102 1.14211 1.24529 0.90249 0.92841 1.07157 1.20673 0.90541 0.87501 0.86074 1.86659 1.38225 1.74967 1.34541 1.23201 0.96757 0.91436 1.05003 1.23483 0.93088 0.97432 0.88456 1.88420 1.70595 1.23317 1.47069 1.23842 0.99365 0.82335 0.98824 0.91976 0.91696 0.92708 0.90734 0.93089 0.91720 0.90806 0.90017 0.87847 0.94357 0.88672 0.93851 0.96032 0.92901 0.89354 0.92818 0.77525 0.88189 0.87219 0.88964 0.91441 0.90105 0.90727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.19 37.16 0.34 -0.74 16 2 C -0.11 -1.19 2.64 -90.62 -0.24 -1.43 16 3 C -0.14 -1.97 8.52 37.16 0.32 -1.65 16 4 C 0.11 1.15 4.67 -4.04 -0.02 1.13 16 5 N -0.48 -7.25 2.68 -114.09 -0.31 -7.56 16 6 C 0.39 7.66 5.28 -318.88 -1.68 5.97 16 7 N -0.45 -9.03 3.45 -176.09 -0.61 -9.64 16 8 C 0.04 0.62 8.71 60.06 0.52 1.14 16 9 C 0.23 5.63 2.09 -68.87 -0.14 5.49 16 10 H 0.05 1.36 8.11 -51.93 -0.42 0.93 16 11 C -0.18 -4.47 8.27 37.16 0.31 -4.16 16 12 C -0.51 -13.21 7.92 -34.44 -0.27 -13.48 16 13 H 0.06 1.60 6.75 -52.49 -0.35 1.25 16 14 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 15 N -0.88 -24.79 11.32 55.43 0.63 -24.16 16 16 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 17 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 N -0.31 -6.78 8.95 30.31 0.27 -6.51 16 21 N -0.26 -5.17 11.25 32.99 0.37 -4.80 16 22 C 0.12 1.89 6.61 -154.02 -1.02 0.87 16 23 C 0.20 2.42 0.90 -89.82 -0.08 2.34 16 24 O -0.54 -6.24 13.03 -35.23 -0.46 -6.70 16 25 C -0.13 -1.45 6.13 -24.48 -0.15 -1.60 16 26 C 0.05 0.51 7.78 38.19 0.30 0.80 16 27 O -0.37 -4.45 11.36 -35.23 -0.40 -4.85 16 28 C 0.03 0.38 6.38 37.88 0.24 0.62 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.80 6.45 -51.93 -0.33 0.47 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.07 1.31 5.75 -51.93 -0.30 1.01 16 36 H 0.08 0.65 6.00 -51.93 -0.31 0.34 16 37 H 0.10 1.12 5.94 -51.93 -0.31 0.81 16 38 H 0.04 0.71 6.34 -51.93 -0.33 0.38 16 39 H 0.09 1.71 6.50 -51.93 -0.34 1.37 16 40 H 0.04 0.61 5.95 -51.93 -0.31 0.30 16 41 H 0.02 0.50 6.41 -51.93 -0.33 0.17 16 42 H 0.05 1.30 5.38 -51.93 -0.28 1.02 16 43 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 44 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 45 H 0.37 3.41 5.38 45.56 0.25 3.66 16 46 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.11 1.37 7.57 -51.93 -0.39 0.98 16 48 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 49 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.08 0.94 7.81 -51.93 -0.41 0.53 16 51 H 0.07 0.65 7.42 -51.93 -0.39 0.27 16 LS Contribution 380.56 15.07 5.73 5.73 Total: -1.00 -31.02 380.56 -8.85 -39.87 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -7.39 Total: 6.18 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -1.67 Total: -3.09 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: 0.36 Total: -52.67 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: -0.86 Total: -11.55 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.02 -8.85 -39.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772336556.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.095 kcal (2) G-P(sol) polarization free energy of solvation -31.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds