Wall clock time and date at job start Tue Mar 31 2020 22:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46970 * 2 1 4 4 C 1.52995 * 109.47052 * 120.00158 * 2 1 3 5 5 N 1.46502 * 109.47383 * 173.50936 * 4 2 1 6 6 C 1.36460 * 127.13586 * 87.21234 * 5 4 2 7 7 N 1.38575 * 126.47286 * 0.02562 * 6 5 4 8 8 C 1.46896 * 111.00279 * 71.12055 * 7 6 5 9 9 C 1.46894 * 110.99997 * 195.07666 * 7 6 5 10 10 H 1.09002 * 109.47346 * 54.99920 * 9 7 6 11 11 C 1.53002 * 109.47120 * 294.99788 * 9 7 6 12 12 C 1.50698 * 109.47481 * 175.00106 * 9 7 6 13 13 H 1.08002 * 120.00226 * 359.97438 * 12 9 7 14 14 C 1.37876 * 120.00097 * 180.02562 * 12 9 7 15 15 N 1.31515 * 120.00460 * 359.97438 * 14 12 9 16 16 Si 1.86802 * 119.99927 * 180.02562 * 14 12 9 17 17 H 1.48506 * 109.47178 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47436 * 119.99716 * 16 14 12 19 19 H 1.48499 * 109.47255 * 239.99620 * 16 14 12 20 20 N 1.31213 * 107.05181 * 179.97438 * 6 5 4 21 21 N 1.28532 * 109.86180 * 359.73244 * 20 6 5 22 22 C 1.30297 * 110.04934 * 0.44812 * 21 20 6 23 23 C 1.50699 * 126.34479 * 179.82241 * 22 21 20 24 24 O 1.42906 * 110.75432 * 236.41928 * 23 22 21 25 25 C 1.55309 * 111.02510 * 0.02562 * 23 22 21 26 26 C 1.54949 * 100.94507 * 152.40074 * 25 23 22 27 27 O 1.43649 * 105.13487 * 323.55678 * 26 25 23 28 28 C 1.43239 * 109.97117 * 24.42884 * 27 26 25 29 29 H 1.08997 * 109.47632 * 300.00250 * 1 2 3 30 30 H 1.09001 * 109.47165 * 60.00021 * 1 2 3 31 31 H 1.09001 * 109.47080 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47298 * 240.00091 * 2 1 3 33 33 H 1.08996 * 109.47009 * 298.47621 * 3 2 1 34 34 H 1.09003 * 109.47114 * 58.48008 * 3 2 1 35 35 H 1.09001 * 109.46677 * 178.48159 * 3 2 1 36 36 H 1.08999 * 109.47133 * 53.50354 * 4 2 1 37 37 H 1.09004 * 109.47103 * 293.50553 * 4 2 1 38 38 H 1.09006 * 109.47193 * 62.96362 * 8 7 6 39 39 H 1.09000 * 109.47465 * 182.96224 * 8 7 6 40 40 H 1.08998 * 109.47308 * 302.96645 * 8 7 6 41 41 H 1.08995 * 109.47486 * 300.00332 * 11 9 7 42 42 H 1.08999 * 109.46979 * 59.99968 * 11 9 7 43 43 H 1.08995 * 109.47563 * 179.97438 * 11 9 7 44 44 H 0.96989 * 120.00146 * 180.02562 * 15 14 12 45 45 H 0.96699 * 113.99705 * 297.98596 * 24 23 22 46 46 H 1.09000 * 111.12521 * 270.32638 * 25 23 22 47 47 H 1.09001 * 111.12322 * 34.47985 * 25 23 22 48 48 H 1.08994 * 110.30902 * 204.64355 * 26 25 23 49 49 H 1.09000 * 110.30869 * 82.47051 * 26 25 23 50 50 H 1.08997 * 109.82974 * 238.77165 * 28 27 26 51 51 H 1.09004 * 109.90611 * 117.84260 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.4967 -0.8580 1.1737 6 6 4.4315 0.0453 1.5889 7 7 4.1841 1.2793 2.1687 8 6 3.6631 1.1249 3.5335 9 6 5.3903 2.1176 2.1574 10 1 5.7657 2.2004 1.1374 11 6 6.4618 1.4815 3.0452 12 6 5.0534 3.4898 2.6815 13 1 4.0441 3.7166 2.9917 14 6 6.0335 4.4560 2.7641 15 7 7.2626 4.1800 2.3860 16 14 5.6161 6.1566 3.4145 17 1 4.1754 6.2105 3.7709 18 1 6.4355 6.4405 4.6200 19 1 5.9053 7.1711 2.3693 20 7 5.6089 -0.4760 1.3364 21 7 5.4673 -1.6361 0.8015 22 6 4.2015 -1.9173 0.6733 23 6 3.6219 -3.1792 0.0878 24 8 2.7428 -2.8766 -0.9975 25 6 4.7457 -4.1506 -0.3655 26 6 4.0291 -5.5169 -0.2221 27 8 3.1981 -5.3843 0.9421 28 6 2.8935 -4.0035 1.1710 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6991 1.9484 -0.9033 34 1 1.6546 1.9642 0.8761 35 1 3.1297 1.4426 0.0272 36 1 1.5848 -1.7098 1.3092 37 1 1.7747 -0.1447 2.1354 38 1 4.4144 0.6394 4.1564 39 1 3.4281 2.1061 3.9460 40 1 2.7604 0.5145 3.5109 41 1 6.0864 1.3987 4.0651 42 1 6.7055 0.4891 2.6661 43 1 7.3570 2.1033 3.0364 44 1 7.9521 4.8596 2.4445 45 1 1.9756 -2.3445 -0.7456 46 1 5.0325 -3.9640 -1.4004 47 1 5.6093 -4.0885 0.2968 48 1 4.7588 -6.3135 -0.0773 49 1 3.4181 -5.7178 -1.1021 50 1 3.2438 -3.7065 2.1595 51 1 1.8178 -3.8434 1.0966 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772336556.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:22 Heat of formation + Delta-G solvation = -11.304165 kcal Electronic energy + Delta-G solvation = -32476.921952 eV Core-core repulsion = 28413.073737 eV Total energy + Delta-G solvation = -4063.848214 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.17554 -40.88454 -39.07344 -38.25567 -37.13436 -34.89101 -34.29699 -32.93890 -31.15972 -30.52268 -29.56472 -28.27844 -27.84440 -27.25006 -26.71259 -24.17430 -23.90536 -23.04193 -22.16287 -21.15033 -20.96778 -19.10086 -18.40273 -17.96203 -17.48533 -17.21718 -17.04219 -16.74738 -16.48648 -16.25069 -15.77344 -15.54319 -15.25224 -15.03104 -14.89590 -14.38984 -14.25895 -14.15045 -13.95426 -13.44598 -13.34871 -13.16942 -12.95917 -12.92092 -12.88556 -12.72400 -12.68072 -12.57143 -12.44822 -12.37935 -12.18097 -12.06813 -11.95845 -11.90538 -11.76300 -11.72717 -11.37277 -11.01717 -10.82719 -10.62692 -10.50679 -10.44681 -9.14093 -8.11720 -6.26362 0.67251 1.19386 1.43609 1.45265 1.56619 1.75268 2.41067 2.64971 2.75289 2.83254 3.01204 3.18508 3.28846 3.47829 3.65132 3.72204 3.90323 3.98364 4.05956 4.14537 4.20235 4.22739 4.39756 4.47019 4.49091 4.52535 4.62172 4.67185 4.71670 4.81473 4.83542 4.84780 4.87609 4.98893 5.00706 5.05829 5.07771 5.13292 5.20215 5.29112 5.38191 5.43369 5.50583 5.60677 5.64407 5.80224 5.82786 6.02646 6.23110 6.27716 6.58917 6.83641 7.42641 7.76157 8.94925 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.016771 B = 0.003660 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.145300 B = 7648.720955 C = 8650.695978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 C -0.141 4.141 4 C 0.094 3.906 5 N -0.465 5.465 6 C 0.381 3.619 7 N -0.445 5.445 8 C 0.036 3.964 9 C 0.244 3.756 10 H -0.004 1.004 11 C -0.163 4.163 12 C -0.517 4.517 13 H 0.073 0.927 14 C 0.012 3.988 15 N -0.920 5.920 16 Si 0.966 3.034 17 H -0.258 1.258 18 H -0.283 1.283 19 H -0.286 1.286 20 N -0.361 5.361 21 N -0.305 5.305 22 C 0.143 3.857 23 C 0.197 3.803 24 O -0.538 6.538 25 C -0.131 4.131 26 C 0.057 3.943 27 O -0.388 6.388 28 C 0.039 3.961 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.027 0.973 36 H 0.123 0.877 37 H 0.110 0.890 38 H 0.024 0.976 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.027 0.973 42 H 0.050 0.950 43 H 0.057 0.943 44 H 0.261 0.739 45 H 0.387 0.613 46 H 0.100 0.900 47 H 0.093 0.907 48 H 0.110 0.890 49 H 0.082 0.918 50 H 0.073 0.927 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.499 -15.701 -3.290 23.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.125 4.125 3 C -0.199 4.199 4 C -0.026 4.026 5 N -0.160 5.160 6 C 0.024 3.976 7 N -0.168 5.168 8 C -0.111 4.111 9 C 0.138 3.862 10 H 0.014 0.986 11 C -0.223 4.223 12 C -0.556 4.556 13 H 0.091 0.909 14 C -0.187 4.187 15 N -0.559 5.559 16 Si 0.792 3.208 17 H -0.181 1.181 18 H -0.209 1.209 19 H -0.212 1.212 20 N -0.205 5.205 21 N -0.146 5.146 22 C -0.126 4.126 23 C 0.153 3.847 24 O -0.345 6.345 25 C -0.169 4.169 26 C -0.019 4.019 27 O -0.307 6.307 28 C -0.039 4.039 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.046 0.954 36 H 0.141 0.859 37 H 0.128 0.872 38 H 0.043 0.957 39 H 0.109 0.891 40 H 0.102 0.898 41 H 0.046 0.954 42 H 0.068 0.932 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.239 0.761 46 H 0.118 0.882 47 H 0.112 0.888 48 H 0.128 0.872 49 H 0.100 0.900 50 H 0.091 0.909 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -15.886 -16.013 -3.854 22.883 hybrid contribution -0.221 1.897 0.825 2.081 sum -16.107 -14.116 -3.029 21.630 Atomic orbital electron populations 1.21777 0.90677 1.03799 1.03333 1.21547 0.98608 0.96184 0.96115 1.21776 1.00192 0.96043 1.01868 1.22620 0.73658 1.04382 1.01985 1.46352 1.09092 1.14219 1.46311 1.23100 0.84700 0.90194 0.99630 1.59321 1.33446 1.04032 1.20002 1.22451 0.98703 1.03743 0.86156 1.18884 0.82989 0.90025 0.94332 0.98585 1.22359 1.02043 0.99876 0.98005 1.21330 0.96088 0.95325 1.42835 0.90877 1.25761 0.94683 1.02669 0.95621 1.70094 1.02372 1.35056 1.48394 0.85382 0.78832 0.79048 0.77588 1.18146 1.20899 1.21207 1.74776 1.20784 1.03988 1.20981 1.73835 1.15738 1.08755 1.16234 1.25302 0.89474 0.93415 1.04446 1.20824 0.91200 0.85832 0.86876 1.86668 1.38558 1.75159 1.34148 1.23222 0.96421 0.92686 1.04617 1.23580 0.93273 0.96581 0.88443 1.88407 1.70921 1.23507 1.47895 1.23848 1.00885 0.81649 0.97479 0.91493 0.91511 0.89819 0.90998 0.92682 0.92014 0.95424 0.85906 0.87239 0.95722 0.89059 0.89784 0.95351 0.93152 0.92431 0.92986 0.76100 0.88169 0.88824 0.87233 0.89992 0.90929 0.87455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.19 71.98 0.66 -0.78 16 2 C -0.11 -1.88 2.64 -10.79 -0.03 -1.91 16 3 C -0.14 -3.78 8.52 71.98 0.61 -3.17 16 4 C 0.09 1.74 4.67 86.38 0.40 2.15 16 5 N -0.46 -13.65 2.68 -514.86 -1.38 -15.03 16 6 C 0.38 15.14 5.28 260.11 1.37 16.51 16 7 N -0.44 -18.23 3.45 -711.02 -2.45 -20.68 16 8 C 0.04 1.24 8.71 127.69 1.11 2.35 16 9 C 0.24 12.60 2.09 44.17 0.09 12.69 16 10 H 0.00 -0.23 8.11 -2.39 -0.02 -0.25 16 11 C -0.16 -8.57 8.27 71.98 0.60 -7.97 16 12 C -0.52 -27.33 7.92 25.60 0.20 -27.12 16 13 H 0.07 3.65 6.75 -2.91 -0.02 3.63 16 14 C 0.01 0.64 5.30 84.65 0.45 1.09 16 15 N -0.92 -53.91 11.32 21.45 0.24 -53.67 16 16 Si 0.97 42.60 29.54 68.60 2.03 44.62 16 17 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 18 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 19 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 20 N -0.36 -16.64 8.95 -58.01 -0.52 -17.16 16 21 N -0.31 -12.36 11.25 -49.54 -0.56 -12.91 16 22 C 0.14 4.43 6.61 137.64 0.91 5.34 16 23 C 0.20 4.43 0.90 -10.28 -0.01 4.42 16 24 O -0.54 -10.71 13.03 -148.98 -1.94 -12.65 16 25 C -0.13 -2.87 6.13 32.05 0.20 -2.68 16 26 C 0.06 0.96 7.78 72.65 0.56 1.53 16 27 O -0.39 -7.98 11.36 -148.98 -1.69 -9.67 16 28 C 0.04 0.72 6.38 72.45 0.46 1.19 16 29 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.07 1.35 6.45 -2.39 -0.02 1.34 16 33 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.03 0.99 5.75 -2.39 -0.01 0.98 16 36 H 0.12 1.30 6.00 -2.39 -0.01 1.29 16 37 H 0.11 1.95 5.94 -2.38 -0.01 1.94 16 38 H 0.02 0.90 6.34 -2.38 -0.02 0.89 16 39 H 0.09 3.20 6.50 -2.39 -0.02 3.18 16 40 H 0.08 2.17 5.95 -2.39 -0.01 2.15 16 41 H 0.03 1.38 6.41 -2.39 -0.02 1.37 16 42 H 0.05 2.65 5.38 -2.39 -0.01 2.64 16 43 H 0.06 3.36 6.07 -2.39 -0.01 3.34 16 44 H 0.26 14.56 8.31 -92.72 -0.77 13.78 16 45 H 0.39 5.36 5.38 -74.06 -0.40 4.96 16 46 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 47 H 0.09 2.36 7.57 -2.39 -0.02 2.34 16 48 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 49 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 50 H 0.07 1.48 7.81 -2.39 -0.02 1.46 16 51 H 0.11 1.28 7.42 -2.38 -0.02 1.27 16 Total: -1.00 -73.06 380.56 1.88 -71.18 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: 0.56 Total: 22.34 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: 7.60 Total: 3.63 kcal Atomic # 7 Polarization: -114.78 SS G_CDS: -4.67 Total: -119.45 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -3.63 Total: -22.32 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Total: -73.06 1.88 -71.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772336556.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.874 kcal (2) G-P(sol) polarization free energy of solvation -73.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds