Wall clock time and date at job start Tue Mar 31 2020 22:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47383 * 2 1 4 4 O 1.42899 * 109.46998 * 120.00012 * 2 1 3 5 5 C 1.53003 * 109.47320 * 239.99654 * 2 1 3 6 6 C 1.50697 * 109.47201 * 174.99669 * 5 2 1 7 7 N 1.30294 * 126.34390 * 84.71854 * 6 5 2 8 8 N 1.28525 * 110.05830 * 179.73405 * 7 6 5 9 9 C 1.31217 * 109.85445 * 0.02562 * 8 7 6 10 10 N 1.38582 * 126.47260 * 179.97438 * 9 8 7 11 11 C 1.46900 * 111.00429 * 249.47581 * 10 9 8 12 12 C 1.46901 * 111.00087 * 13.43373 * 10 9 8 13 13 H 1.09002 * 109.47620 * 54.99551 * 12 10 9 14 14 C 1.53002 * 109.46999 * 294.99884 * 12 10 9 15 15 C 1.50700 * 109.47337 * 175.00281 * 12 10 9 16 16 H 1.07992 * 119.99944 * 359.97438 * 15 12 10 17 17 C 1.37881 * 120.00047 * 179.97438 * 15 12 10 18 18 N 1.31513 * 119.99906 * 359.97438 * 17 15 12 19 19 Si 1.86791 * 120.00110 * 179.97438 * 17 15 12 20 20 H 1.48506 * 109.47474 * 59.99710 * 19 17 15 21 21 H 1.48499 * 109.47572 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47089 * 299.99869 * 19 17 15 23 23 N 1.36452 * 107.05934 * 359.97438 * 9 8 7 24 24 C 1.46497 * 127.14190 * 180.02562 * 23 9 8 25 25 C 1.53003 * 109.47014 * 84.34253 * 24 23 9 26 26 H 1.08998 * 110.80523 * 309.59687 * 25 24 23 27 27 C 1.54809 * 110.90450 * 185.96917 * 25 24 23 28 28 C 1.54101 * 104.18837 * 220.92300 * 27 25 24 29 29 O 1.43747 * 107.29182 * 357.97062 * 28 27 25 30 30 C 1.44425 * 107.00136 * 26.48810 * 29 28 27 31 31 H 1.08999 * 109.47383 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46693 * 300.00011 * 1 2 3 33 33 H 1.09000 * 109.47419 * 59.99715 * 1 2 3 34 34 H 0.96698 * 114.00283 * 60.00362 * 4 2 1 35 35 H 1.09002 * 109.46547 * 55.00136 * 5 2 1 36 36 H 1.08991 * 109.47018 * 295.00525 * 5 2 1 37 37 H 1.09002 * 109.46777 * 63.91039 * 11 10 9 38 38 H 1.08993 * 109.47339 * 183.91160 * 11 10 9 39 39 H 1.08994 * 109.46819 * 303.91647 * 11 10 9 40 40 H 1.09006 * 109.47360 * 300.00110 * 14 12 10 41 41 H 1.09005 * 109.47059 * 59.99800 * 14 12 10 42 42 H 1.08997 * 109.47623 * 179.97438 * 14 12 10 43 43 H 0.96999 * 120.00222 * 180.02562 * 18 17 15 44 44 H 1.08996 * 109.47099 * 204.34495 * 24 23 9 45 45 H 1.08998 * 109.46805 * 324.34086 * 24 23 9 46 46 H 1.08997 * 110.49110 * 339.59572 * 27 25 24 47 47 H 1.08997 * 110.48858 * 102.11195 * 27 25 24 48 48 H 1.08998 * 109.88156 * 117.39098 * 28 27 25 49 49 H 1.08995 * 109.87982 * 238.40108 * 28 27 25 50 50 H 1.08998 * 110.65231 * 201.48558 * 30 29 28 51 51 H 1.08999 * 110.59631 * 78.47531 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7213 -1.2492 6 6 3.5419 -0.6149 -1.3127 7 7 4.3972 -1.3960 -0.7161 8 7 5.5973 -1.0253 -0.9886 9 6 5.5717 0.0212 -1.7798 10 7 6.6697 0.6993 -2.2847 11 6 6.7865 2.0344 -1.6830 12 6 7.9024 -0.0756 -2.0897 13 1 7.7822 -1.0661 -2.5285 14 6 8.1875 -0.2122 -0.5927 15 6 9.0524 0.6334 -2.7574 16 1 8.8844 1.5661 -3.2751 17 6 10.3192 0.0912 -2.7072 18 7 10.5239 -1.0444 -2.0763 19 14 11.7445 0.9697 -3.5353 20 1 11.9082 2.3196 -2.9385 21 1 12.9907 0.1864 -3.3382 22 1 11.4679 1.1012 -4.9885 23 7 4.2596 0.3158 -2.0116 24 6 3.7298 1.4032 -2.8379 25 6 3.6858 0.9572 -4.3008 26 1 4.6451 0.5405 -4.6076 27 6 3.2722 2.1295 -5.2235 28 6 2.3112 1.4871 -6.2426 29 8 2.2440 0.0834 -5.9405 30 6 2.5405 -0.0607 -4.5344 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.7210 -1.5952 1.2329 35 1 1.6054 -0.2618 -2.1369 36 1 1.7516 -1.7715 -1.2055 37 1 6.9710 1.9358 -0.6132 38 1 7.6143 2.5708 -2.1466 39 1 5.8606 2.5869 -1.8425 40 1 8.3078 0.7783 -0.1538 41 1 7.3556 -0.7251 -0.1098 42 1 9.1018 -0.7876 -0.4480 43 1 11.4151 -1.4256 -2.0407 44 1 2.7232 1.6556 -2.5045 45 1 4.3736 2.2777 -2.7438 46 1 2.7600 2.9030 -4.6513 47 1 4.1449 2.5442 -5.7279 48 1 1.3211 1.9337 -6.1510 49 1 2.6914 1.6331 -7.2536 50 1 2.8766 -1.0739 -4.3142 51 1 1.6699 0.1957 -3.9307 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772368943.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:53 Heat of formation + Delta-G solvation = -0.061532 kcal Electronic energy + Delta-G solvation = -31762.185606 eV Core-core repulsion = 27698.824908 eV Total energy + Delta-G solvation = -4063.360697 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.55237 -39.63044 -37.97954 -37.18592 -35.45101 -32.96319 -32.57356 -31.98822 -29.98330 -29.62356 -28.65802 -27.36890 -26.15358 -25.15850 -24.93877 -22.99376 -22.18334 -21.68267 -21.04878 -20.29859 -19.38759 -17.36377 -16.64506 -16.51258 -16.27325 -16.07597 -15.73993 -15.43330 -15.29845 -15.25844 -14.56785 -14.39392 -14.27847 -14.00987 -13.60744 -13.32611 -13.11532 -12.77476 -12.70811 -12.40763 -12.29251 -12.15164 -12.07336 -11.69247 -11.63613 -11.44776 -11.16493 -11.14033 -11.10143 -10.93200 -10.84372 -10.71605 -10.36798 -10.31573 -10.17737 -10.05625 -9.91681 -9.73609 -9.65011 -8.84995 -8.74828 -8.38826 -7.40047 -6.01934 -4.09538 2.20166 2.60151 3.30067 3.35530 3.36562 3.42548 3.66945 4.11943 4.24078 4.31273 4.33920 4.40786 4.51946 4.64336 4.65491 4.74211 4.82073 4.84251 4.89345 5.00453 5.05654 5.12843 5.22518 5.29378 5.40199 5.40502 5.43423 5.52073 5.52927 5.62308 5.68004 5.75608 5.80907 5.94954 5.98688 6.08766 6.21933 6.34797 6.48762 6.59756 6.85325 7.02077 7.17746 7.34784 7.52244 7.58775 7.68982 7.75618 7.98592 8.32756 8.48667 8.91804 9.40119 9.54947 11.04137 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.010881 B = 0.003967 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.638964 B = 7056.961316 C = 8925.458820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.109 3.891 3 H 0.092 0.908 4 O -0.549 6.549 5 C -0.061 4.061 6 C 0.152 3.848 7 N -0.274 5.274 8 N -0.312 5.312 9 C 0.384 3.616 10 N -0.456 5.456 11 C 0.036 3.964 12 C 0.231 3.769 13 H 0.048 0.952 14 C -0.179 4.179 15 C -0.515 4.515 16 H 0.062 0.938 17 C 0.064 3.936 18 N -0.884 5.884 19 Si 0.899 3.101 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.277 1.277 23 N -0.486 5.486 24 C 0.124 3.876 25 C -0.137 4.137 26 H 0.106 0.894 27 C -0.147 4.147 28 C 0.047 3.953 29 O -0.375 6.375 30 C 0.053 3.947 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.376 0.624 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.038 0.962 38 H 0.092 0.908 39 H 0.042 0.958 40 H 0.020 0.980 41 H 0.052 0.948 42 H 0.088 0.912 43 H 0.263 0.737 44 H 0.088 0.912 45 H 0.100 0.900 46 H 0.077 0.923 47 H 0.086 0.914 48 H 0.058 0.942 49 H 0.085 0.915 50 H 0.093 0.907 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.858 7.144 -2.244 23.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.048 3.952 3 H 0.110 0.890 4 O -0.354 6.354 5 C -0.101 4.101 6 C -0.115 4.115 7 N -0.113 5.113 8 N -0.156 5.156 9 C 0.029 3.971 10 N -0.180 5.180 11 C -0.111 4.111 12 C 0.126 3.874 13 H 0.066 0.934 14 C -0.238 4.238 15 C -0.553 4.553 16 H 0.080 0.920 17 C -0.138 4.138 18 N -0.521 5.521 19 Si 0.727 3.273 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 N -0.182 5.182 24 C 0.001 3.999 25 C -0.157 4.157 26 H 0.124 0.876 27 C -0.185 4.185 28 C -0.029 4.029 29 O -0.294 6.294 30 C -0.023 4.023 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.224 0.776 35 H 0.103 0.897 36 H 0.116 0.884 37 H 0.056 0.944 38 H 0.111 0.889 39 H 0.061 0.939 40 H 0.039 0.961 41 H 0.070 0.930 42 H 0.106 0.894 43 H 0.073 0.927 44 H 0.106 0.894 45 H 0.118 0.882 46 H 0.096 0.904 47 H 0.105 0.895 48 H 0.076 0.924 49 H 0.103 0.897 50 H 0.111 0.889 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.955 6.361 -1.896 21.981 hybrid contribution 0.326 1.168 -0.647 1.374 sum -20.629 7.529 -2.544 22.106 Atomic orbital electron populations 1.22520 0.95974 1.02891 1.02856 1.21815 0.92416 0.96577 0.84350 0.88964 1.86663 1.77233 1.28997 1.42541 1.20790 0.85807 1.03648 0.99854 1.24093 0.96165 0.91864 0.99388 1.73950 0.95734 1.22306 1.19275 1.74912 1.12670 1.13614 1.14387 1.23239 0.83785 0.95681 0.94397 1.59387 1.02607 1.04022 1.51979 1.22359 1.01182 0.88954 0.98592 1.19335 0.81452 0.92964 0.93605 0.93387 1.22538 1.03631 0.99584 0.98031 1.20981 0.91690 1.08199 1.34449 0.91986 1.24886 0.98626 0.94992 0.95345 1.69913 1.22274 1.18193 1.41760 0.86558 0.81446 0.79448 0.79887 1.20317 1.21267 1.20259 1.46198 1.06312 1.26115 1.39618 1.21761 1.00301 0.89013 0.88872 1.23150 1.01839 0.96589 0.94126 0.87567 1.22918 1.00528 0.97805 0.97276 1.23145 0.98425 0.81895 0.99482 1.88907 1.91753 1.23844 1.24917 1.23711 0.95505 1.00519 0.82614 0.91897 0.91492 0.91622 0.77647 0.89721 0.88353 0.94356 0.88901 0.93941 0.96116 0.92953 0.89388 0.92728 0.89370 0.88174 0.90422 0.89539 0.92414 0.89689 0.88887 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.14 9.53 37.16 0.35 -0.79 16 2 C 0.11 1.01 3.57 -26.73 -0.10 0.91 16 3 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 4 O -0.55 -6.53 13.09 -35.23 -0.46 -6.99 16 5 C -0.06 -0.60 5.15 -27.88 -0.14 -0.74 16 6 C 0.15 2.34 7.09 -154.02 -1.09 1.24 16 7 N -0.27 -5.48 12.18 32.99 0.40 -5.07 16 8 N -0.31 -7.12 8.98 30.31 0.27 -6.84 16 9 C 0.38 7.81 6.68 -318.87 -2.13 5.68 16 10 N -0.46 -9.70 4.77 -176.08 -0.84 -10.54 16 11 C 0.04 0.67 8.75 60.06 0.53 1.20 16 12 C 0.23 5.92 2.07 -68.86 -0.14 5.77 16 13 H 0.05 1.42 8.11 -51.93 -0.42 0.99 16 14 C -0.18 -4.60 8.27 37.16 0.31 -4.30 16 15 C -0.51 -13.74 7.94 -34.44 -0.27 -14.02 16 16 H 0.06 1.60 6.75 -52.49 -0.35 1.25 16 17 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 18 N -0.88 -25.37 11.32 55.43 0.63 -24.74 16 19 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 N -0.49 -7.52 2.76 -114.09 -0.31 -7.83 16 24 C 0.12 1.37 5.17 -4.04 -0.02 1.35 16 25 C -0.14 -1.52 3.34 -88.61 -0.30 -1.82 16 26 H 0.11 1.56 8.14 -51.93 -0.42 1.14 16 27 C -0.15 -1.22 6.60 -25.20 -0.17 -1.39 16 28 C 0.05 0.42 7.70 37.73 0.29 0.71 16 29 O -0.38 -4.53 11.52 -35.23 -0.41 -4.94 16 30 C 0.05 0.57 6.63 38.21 0.25 0.82 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.38 3.22 9.05 45.56 0.41 3.63 16 35 H 0.08 0.64 5.11 -51.93 -0.27 0.37 16 36 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.04 0.75 6.28 -51.93 -0.33 0.42 16 38 H 0.09 1.74 6.53 -51.93 -0.34 1.40 16 39 H 0.04 0.63 5.74 -51.93 -0.30 0.33 16 40 H 0.02 0.50 6.39 -51.93 -0.33 0.17 16 41 H 0.05 1.35 5.43 -51.93 -0.28 1.07 16 42 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 43 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 44 H 0.09 0.70 7.29 -51.93 -0.38 0.32 16 45 H 0.10 1.10 5.80 -51.93 -0.30 0.79 16 46 H 0.08 0.48 7.86 -51.93 -0.41 0.07 16 47 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 49 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 51 H 0.06 0.50 6.14 -51.93 -0.32 0.18 16 LS Contribution 391.56 15.07 5.90 5.90 Total: -1.00 -33.98 391.56 -9.86 -43.84 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -7.29 Total: 4.99 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -2.73 Total: -3.71 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: 0.15 Total: -55.03 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: -0.87 Total: -11.93 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.98 -9.86 -43.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772368943.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.775 kcal (2) G-P(sol) polarization free energy of solvation -33.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds