Wall clock time and date at job start Tue Mar 31 2020 22:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47383 * 2 1 4 4 O 1.42899 * 109.46998 * 120.00012 * 2 1 3 5 5 C 1.53003 * 109.47320 * 239.99654 * 2 1 3 6 6 C 1.50697 * 109.47201 * 174.99669 * 5 2 1 7 7 N 1.30294 * 126.34390 * 84.71854 * 6 5 2 8 8 N 1.28525 * 110.05830 * 179.73405 * 7 6 5 9 9 C 1.31217 * 109.85445 * 0.02562 * 8 7 6 10 10 N 1.38582 * 126.47260 * 179.97438 * 9 8 7 11 11 C 1.46900 * 111.00429 * 249.47581 * 10 9 8 12 12 C 1.46901 * 111.00087 * 13.43373 * 10 9 8 13 13 H 1.09002 * 109.47620 * 54.99551 * 12 10 9 14 14 C 1.53002 * 109.46999 * 294.99884 * 12 10 9 15 15 C 1.50700 * 109.47337 * 175.00281 * 12 10 9 16 16 H 1.07992 * 119.99944 * 359.97438 * 15 12 10 17 17 C 1.37881 * 120.00047 * 179.97438 * 15 12 10 18 18 N 1.31513 * 119.99906 * 359.97438 * 17 15 12 19 19 Si 1.86791 * 120.00110 * 179.97438 * 17 15 12 20 20 H 1.48506 * 109.47474 * 59.99710 * 19 17 15 21 21 H 1.48499 * 109.47572 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47089 * 299.99869 * 19 17 15 23 23 N 1.36452 * 107.05934 * 359.97438 * 9 8 7 24 24 C 1.46497 * 127.14190 * 180.02562 * 23 9 8 25 25 C 1.53003 * 109.47014 * 84.34253 * 24 23 9 26 26 H 1.08998 * 110.80523 * 309.59687 * 25 24 23 27 27 C 1.54809 * 110.90450 * 185.96917 * 25 24 23 28 28 C 1.54101 * 104.18837 * 220.92300 * 27 25 24 29 29 O 1.43747 * 107.29182 * 357.97062 * 28 27 25 30 30 C 1.44425 * 107.00136 * 26.48810 * 29 28 27 31 31 H 1.08999 * 109.47383 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46693 * 300.00011 * 1 2 3 33 33 H 1.09000 * 109.47419 * 59.99715 * 1 2 3 34 34 H 0.96698 * 114.00283 * 60.00362 * 4 2 1 35 35 H 1.09002 * 109.46547 * 55.00136 * 5 2 1 36 36 H 1.08991 * 109.47018 * 295.00525 * 5 2 1 37 37 H 1.09002 * 109.46777 * 63.91039 * 11 10 9 38 38 H 1.08993 * 109.47339 * 183.91160 * 11 10 9 39 39 H 1.08994 * 109.46819 * 303.91647 * 11 10 9 40 40 H 1.09006 * 109.47360 * 300.00110 * 14 12 10 41 41 H 1.09005 * 109.47059 * 59.99800 * 14 12 10 42 42 H 1.08997 * 109.47623 * 179.97438 * 14 12 10 43 43 H 0.96999 * 120.00222 * 180.02562 * 18 17 15 44 44 H 1.08996 * 109.47099 * 204.34495 * 24 23 9 45 45 H 1.08998 * 109.46805 * 324.34086 * 24 23 9 46 46 H 1.08997 * 110.49110 * 339.59572 * 27 25 24 47 47 H 1.08997 * 110.48858 * 102.11195 * 27 25 24 48 48 H 1.08998 * 109.88156 * 117.39098 * 28 27 25 49 49 H 1.08995 * 109.87982 * 238.40108 * 28 27 25 50 50 H 1.08998 * 110.65231 * 201.48558 * 30 29 28 51 51 H 1.08999 * 110.59631 * 78.47531 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7213 -1.2492 6 6 3.5419 -0.6149 -1.3127 7 7 4.3972 -1.3960 -0.7161 8 7 5.5973 -1.0253 -0.9886 9 6 5.5717 0.0212 -1.7798 10 7 6.6697 0.6993 -2.2847 11 6 6.7865 2.0344 -1.6830 12 6 7.9024 -0.0756 -2.0897 13 1 7.7822 -1.0661 -2.5285 14 6 8.1875 -0.2122 -0.5927 15 6 9.0524 0.6334 -2.7574 16 1 8.8844 1.5661 -3.2751 17 6 10.3192 0.0912 -2.7072 18 7 10.5239 -1.0444 -2.0763 19 14 11.7445 0.9697 -3.5353 20 1 11.9082 2.3196 -2.9385 21 1 12.9907 0.1864 -3.3382 22 1 11.4679 1.1012 -4.9885 23 7 4.2596 0.3158 -2.0116 24 6 3.7298 1.4032 -2.8379 25 6 3.6858 0.9572 -4.3008 26 1 4.6451 0.5405 -4.6076 27 6 3.2722 2.1295 -5.2235 28 6 2.3112 1.4871 -6.2426 29 8 2.2440 0.0834 -5.9405 30 6 2.5405 -0.0607 -4.5344 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.7210 -1.5952 1.2329 35 1 1.6054 -0.2618 -2.1369 36 1 1.7516 -1.7715 -1.2055 37 1 6.9710 1.9358 -0.6132 38 1 7.6143 2.5708 -2.1466 39 1 5.8606 2.5869 -1.8425 40 1 8.3078 0.7783 -0.1538 41 1 7.3556 -0.7251 -0.1098 42 1 9.1018 -0.7876 -0.4480 43 1 11.4151 -1.4256 -2.0407 44 1 2.7232 1.6556 -2.5045 45 1 4.3736 2.2777 -2.7438 46 1 2.7600 2.9030 -4.6513 47 1 4.1449 2.5442 -5.7279 48 1 1.3211 1.9337 -6.1510 49 1 2.6914 1.6331 -7.2536 50 1 2.8766 -1.0739 -4.3142 51 1 1.6699 0.1957 -3.9307 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772368943.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:52 Heat of formation + Delta-G solvation = -24.082215 kcal Electronic energy + Delta-G solvation = -31763.227221 eV Core-core repulsion = 27698.824908 eV Total energy + Delta-G solvation = -4064.402312 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.93886 -40.44599 -39.18547 -38.51840 -36.58041 -34.85997 -33.55486 -33.04812 -31.15903 -30.60849 -30.28957 -28.51063 -27.34645 -26.97944 -26.48181 -23.90370 -23.24383 -22.95449 -21.97710 -21.49099 -20.95700 -18.52838 -18.11867 -17.59933 -17.48369 -17.20144 -17.03402 -16.60103 -16.33504 -16.26733 -16.20245 -15.61847 -15.16871 -15.10607 -14.93316 -14.64578 -14.31863 -14.08590 -13.58116 -13.40792 -13.32686 -13.22809 -13.10960 -12.95448 -12.92412 -12.68425 -12.65558 -12.57932 -12.37784 -12.26480 -12.09686 -12.00202 -11.90557 -11.81910 -11.57551 -11.36602 -11.16813 -10.91288 -10.82881 -10.65406 -10.48839 -10.30955 -9.03387 -8.11806 -6.27405 0.87789 1.34699 1.44427 1.46433 1.54107 1.98028 2.41432 2.89635 3.03983 3.17529 3.29211 3.39222 3.54319 3.61963 3.73557 3.89416 3.93960 4.02879 4.06925 4.12582 4.20268 4.27854 4.34642 4.35610 4.43385 4.52162 4.60360 4.65653 4.67988 4.74439 4.82103 4.87054 4.88397 4.95604 4.97738 5.03522 5.08064 5.13479 5.19635 5.22548 5.30921 5.36484 5.48171 5.63139 5.66100 5.86987 5.88331 6.09813 6.22983 6.63606 6.82192 6.92675 7.41536 7.95625 8.94511 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.010881 B = 0.003967 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.638964 B = 7056.961316 C = 8925.458820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.110 3.890 3 H 0.087 0.913 4 O -0.581 6.581 5 C -0.059 4.059 6 C 0.182 3.818 7 N -0.323 5.323 8 N -0.365 5.365 9 C 0.362 3.638 10 N -0.455 5.455 11 C 0.039 3.961 12 C 0.244 3.756 13 H -0.005 1.005 14 C -0.160 4.160 15 C -0.524 4.524 16 H 0.072 0.928 17 C 0.011 3.989 18 N -0.920 5.920 19 Si 0.969 3.031 20 H -0.264 1.264 21 H -0.288 1.288 22 H -0.270 1.270 23 N -0.475 5.475 24 C 0.116 3.884 25 C -0.136 4.136 26 H 0.059 0.941 27 C -0.137 4.137 28 C 0.042 3.958 29 O -0.404 6.404 30 C 0.055 3.945 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.387 0.613 35 H 0.118 0.882 36 H 0.110 0.890 37 H 0.022 0.978 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.026 0.974 41 H 0.047 0.953 42 H 0.058 0.942 43 H 0.262 0.738 44 H 0.136 0.864 45 H 0.105 0.895 46 H 0.112 0.888 47 H 0.081 0.919 48 H 0.085 0.915 49 H 0.085 0.915 50 H 0.066 0.934 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.075 10.145 -3.284 27.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.050 3.950 3 H 0.105 0.895 4 O -0.388 6.388 5 C -0.099 4.099 6 C -0.087 4.087 7 N -0.161 5.161 8 N -0.209 5.209 9 C 0.005 3.995 10 N -0.178 5.178 11 C -0.108 4.108 12 C 0.138 3.862 13 H 0.013 0.987 14 C -0.219 4.219 15 C -0.562 4.562 16 H 0.090 0.910 17 C -0.188 4.188 18 N -0.559 5.559 19 Si 0.794 3.206 20 H -0.189 1.189 21 H -0.214 1.214 22 H -0.195 1.195 23 N -0.171 5.171 24 C -0.005 4.005 25 C -0.156 4.156 26 H 0.077 0.923 27 C -0.175 4.175 28 C -0.034 4.034 29 O -0.324 6.324 30 C -0.021 4.021 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.236 0.764 35 H 0.136 0.864 36 H 0.129 0.871 37 H 0.040 0.960 38 H 0.107 0.893 39 H 0.103 0.897 40 H 0.045 0.955 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.153 0.847 45 H 0.124 0.876 46 H 0.130 0.870 47 H 0.100 0.900 48 H 0.103 0.897 49 H 0.104 0.896 50 H 0.085 0.915 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -24.215 9.386 -2.949 26.137 hybrid contribution 1.166 0.195 -0.342 1.231 sum -23.049 9.581 -3.292 25.177 Atomic orbital electron populations 1.22425 0.92942 1.03960 1.03876 1.21913 0.94590 0.95709 0.82821 0.89535 1.86625 1.78127 1.30152 1.43930 1.21141 0.81623 1.05205 1.01884 1.25162 0.98032 0.89486 0.95973 1.73839 0.95583 1.24717 1.21972 1.74716 1.14846 1.15090 1.16226 1.23072 0.85240 0.95897 0.95294 1.59231 1.01385 1.04516 1.52714 1.22418 1.03308 0.87808 0.97221 1.18862 0.83556 0.91168 0.92606 0.98655 1.22314 1.01851 0.99123 0.98635 1.21293 0.92159 1.08440 1.34331 0.91026 1.25801 1.01509 0.95610 0.95879 1.70089 1.22738 1.19871 1.43171 0.85448 0.77637 0.78564 0.78980 1.18894 1.21408 1.19491 1.46363 1.04376 1.26898 1.39415 1.22218 1.02627 0.87515 0.88129 1.23016 0.99884 0.98033 0.94677 0.92287 1.22916 1.00629 0.97237 0.96758 1.23364 1.00002 0.80414 0.99667 1.88878 1.91892 1.26066 1.25550 1.23725 0.96475 0.99046 0.82872 0.90872 0.91724 0.89324 0.76363 0.86369 0.87149 0.95976 0.89262 0.89736 0.95521 0.93398 0.92362 0.92898 0.84651 0.87646 0.86966 0.90028 0.89671 0.89641 0.91550 0.88651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 9.53 71.98 0.69 -0.71 16 2 C 0.11 1.68 3.57 30.59 0.11 1.79 16 3 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 4 O -0.58 -13.04 13.09 -148.98 -1.95 -14.99 16 5 C -0.06 -0.97 5.15 29.85 0.15 -0.82 16 6 C 0.18 5.42 7.09 137.64 0.98 6.40 16 7 N -0.32 -13.33 12.18 -49.54 -0.60 -13.94 16 8 N -0.37 -17.58 8.98 -58.00 -0.52 -18.10 16 9 C 0.36 15.18 6.68 260.11 1.74 16.92 16 10 N -0.45 -19.96 4.77 -711.00 -3.39 -23.35 16 11 C 0.04 1.43 8.75 127.69 1.12 2.55 16 12 C 0.24 13.23 2.07 44.17 0.09 13.32 16 13 H 0.00 -0.29 8.11 -2.39 -0.02 -0.31 16 14 C -0.16 -8.74 8.27 71.98 0.60 -8.15 16 15 C -0.52 -28.78 7.94 25.60 0.20 -28.58 16 16 H 0.07 3.71 6.75 -2.91 -0.02 3.69 16 17 C 0.01 0.63 5.30 84.66 0.45 1.08 16 18 N -0.92 -55.19 11.32 21.45 0.24 -54.94 16 19 Si 0.97 43.53 29.54 68.60 2.03 45.56 16 20 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 21 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 23 N -0.47 -14.23 2.76 -514.87 -1.42 -15.65 16 24 C 0.12 2.19 5.17 86.38 0.45 2.63 16 25 C -0.14 -2.75 3.34 -9.49 -0.03 -2.78 16 26 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 27 C -0.14 -1.81 6.60 31.58 0.21 -1.60 16 28 C 0.04 0.60 7.70 72.35 0.56 1.15 16 29 O -0.40 -8.95 11.52 -148.98 -1.72 -10.66 16 30 C 0.06 1.05 6.63 72.66 0.48 1.53 16 31 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 33 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.39 6.23 9.05 -74.06 -0.67 5.56 16 35 H 0.12 1.16 5.11 -2.39 -0.01 1.14 16 36 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.02 0.86 6.28 -2.39 -0.01 0.85 16 38 H 0.09 3.30 6.53 -2.39 -0.02 3.28 16 39 H 0.08 2.32 5.74 -2.39 -0.01 2.31 16 40 H 0.03 1.36 6.39 -2.38 -0.02 1.34 16 41 H 0.05 2.64 5.43 -2.38 -0.01 2.63 16 42 H 0.06 3.51 6.07 -2.39 -0.01 3.49 16 43 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 44 H 0.14 1.32 7.29 -2.39 -0.02 1.30 16 45 H 0.11 1.92 5.80 -2.39 -0.01 1.90 16 46 H 0.11 0.74 7.86 -2.39 -0.02 0.72 16 47 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 50 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 51 H 0.10 1.10 6.14 -2.39 -0.01 1.09 16 Total: -1.00 -81.85 391.56 0.73 -81.12 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: 0.28 Total: 20.22 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: 7.78 Total: 4.74 kcal Atomic # 7 Polarization: -120.28 SS G_CDS: -5.70 Total: -125.98 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -3.67 Total: -25.65 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -81.85 0.73 -81.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772368943.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.035 kcal (2) G-P(sol) polarization free energy of solvation -81.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds