Wall clock time and date at job start Tue Mar 31 2020 22:24:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08998 * 109.47539 * 2 1
4 4 O 1.42901 * 109.47279 * 120.00763 * 2 1 3
5 5 C 1.53004 * 109.46997 * 240.00223 * 2 1 3
6 6 C 1.50698 * 109.47230 * 173.28191 * 5 2 1
7 7 N 1.30289 * 126.34805 * 77.87672 * 6 5 2
8 8 N 1.28532 * 110.05394 * 180.02562 * 7 6 5
9 9 C 1.31217 * 109.85812 * 0.02562 * 8 7 6
10 10 N 1.38583 * 126.46931 * 179.97438 * 9 8 7
11 11 C 1.46904 * 110.99800 * 106.66707 * 10 9 8
12 12 C 1.46889 * 111.00320 * 342.71329 * 10 9 8
13 13 H 1.09003 * 109.47247 * 310.00309 * 12 10 9
14 14 C 1.52999 * 109.47418 * 70.00008 * 12 10 9
15 15 C 1.50702 * 109.47664 * 190.00288 * 12 10 9
16 16 H 1.08005 * 119.99411 * 354.51134 * 15 12 10
17 17 C 1.37873 * 120.00672 * 174.51667 * 15 12 10
18 18 N 1.31515 * 120.00136 * 158.07812 * 17 15 12
19 19 Si 1.86802 * 119.99649 * 338.07859 * 17 15 12
20 20 H 1.48504 * 109.46782 * 179.97438 * 19 17 15
21 21 H 1.48498 * 109.47197 * 299.99804 * 19 17 15
22 22 H 1.48502 * 109.47119 * 59.99931 * 19 17 15
23 23 N 1.36450 * 107.05662 * 0.22384 * 9 8 7
24 24 C 1.46500 * 127.13880 * 179.77415 * 23 9 8
25 25 C 1.52996 * 109.47367 * 276.18221 * 24 23 9
26 26 H 1.09002 * 110.74968 * 55.56342 * 25 24 23
27 27 C 1.55298 * 110.84954 * 179.26166 * 25 24 23
28 28 C 1.54944 * 100.94464 * 152.32101 * 27 25 24
29 29 O 1.43648 * 105.13739 * 323.55860 * 28 27 25
30 30 C 1.43235 * 109.96622 * 24.42392 * 29 28 27
31 31 H 1.08997 * 109.47402 * 179.97438 * 1 2 3
32 32 H 1.09000 * 109.46877 * 299.99915 * 1 2 3
33 33 H 1.09001 * 109.46995 * 59.99628 * 1 2 3
34 34 H 0.96700 * 113.99638 * 59.99309 * 4 2 1
35 35 H 1.09005 * 109.46828 * 53.27852 * 5 2 1
36 36 H 1.09001 * 109.47104 * 293.28562 * 5 2 1
37 37 H 1.08996 * 109.47075 * 302.33629 * 11 10 9
38 38 H 1.08997 * 109.47056 * 62.33641 * 11 10 9
39 39 H 1.08998 * 109.47091 * 182.32904 * 11 10 9
40 40 H 1.09006 * 109.46947 * 294.63773 * 14 12 10
41 41 H 1.09002 * 109.46965 * 54.63220 * 14 12 10
42 42 H 1.08997 * 109.47269 * 174.63634 * 14 12 10
43 43 H 0.96998 * 119.99867 * 354.94711 * 18 17 15
44 44 H 1.08998 * 109.46589 * 36.18411 * 24 23 9
45 45 H 1.09001 * 109.46817 * 156.18041 * 24 23 9
46 46 H 1.08996 * 111.13013 * 270.24196 * 27 25 24
47 47 H 1.09003 * 111.12768 * 34.40286 * 27 25 24
48 48 H 1.09004 * 110.31277 * 204.63838 * 28 27 25
49 49 H 1.09003 * 110.39275 * 82.51543 * 28 27 25
50 50 H 1.09002 * 109.82709 * 238.77366 * 30 29 28
51 51 H 1.09005 * 109.82687 * 117.80795 * 30 29 28
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 8 2.0064 -0.6738 1.1667
5 6 2.0400 -0.7212 -1.2493
6 6 3.5378 -0.5789 -1.3353
7 7 4.4180 -1.2509 -0.6488
8 7 5.6054 -0.8781 -0.9698
9 6 5.5458 0.0599 -1.8855
10 7 6.6213 0.7051 -2.4750
11 6 6.8159 0.2481 -3.8575
12 6 7.8444 0.5210 -1.6827
13 1 7.6421 0.7660 -0.6400
14 6 8.3039 -0.9347 -1.7846
15 6 8.9264 1.4274 -2.2108
16 1 8.7547 2.0095 -3.1042
17 6 10.1353 1.5136 -1.5536
18 7 11.2044 1.9315 -2.1956
19 14 10.2548 1.0367 0.2485
20 1 11.6525 1.2171 0.7166
21 1 9.3488 1.8984 1.0497
22 1 9.8582 -0.3851 0.4117
23 7 4.2248 0.2840 -2.1435
24 6 3.6598 1.2469 -3.0921
25 6 3.5741 2.6240 -2.4311
26 1 4.5498 2.9341 -2.0569
27 6 2.9955 3.6753 -3.4168
28 6 2.3431 4.6760 -2.4300
29 8 1.8121 3.8652 -1.3698
30 6 2.5255 2.6253 -1.2980
31 1 -0.3634 -1.0276 -0.0005
32 1 -0.3633 0.5138 0.8900
33 1 -0.3633 0.5139 -0.8900
34 1 1.7209 -1.5953 1.2327
35 1 1.5817 -0.2814 -2.1352
36 1 1.7781 -1.7777 -1.1913
37 1 6.9656 -0.8315 -3.8656
38 1 5.9356 0.4973 -4.4499
39 1 7.6909 0.7395 -4.2829
40 1 7.5633 -1.5831 -1.3162
41 1 8.4145 -1.2082 -2.8339
42 1 9.2612 -1.0500 -1.2762
43 1 11.1597 2.1090 -3.1481
44 1 4.2984 1.3060 -3.9735
45 1 2.6618 0.9229 -3.3876
46 1 3.7885 4.1520 -3.9928
47 1 2.2493 3.2287 -4.0740
48 1 1.5418 5.2260 -2.9234
49 1 3.0907 5.3668 -2.0399
50 1 1.8347 1.7929 -1.4326
51 1 3.0243 2.5410 -0.3324
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001772368945.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:24:00
Heat of formation + Delta-G solvation = 3.104575 kcal
Electronic energy + Delta-G solvation = -32165.174736 eV
Core-core repulsion = 28101.951331 eV
Total energy + Delta-G solvation = -4063.223405 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-42.71593 -39.72411 -38.04839 -37.37589 -35.55140 -33.01453 -32.63981 -32.09911
-30.19232 -29.79021 -29.22209 -27.39326 -26.30925 -25.39748 -24.55491 -22.96298
-22.25734 -21.80572 -21.05983 -20.35837 -19.26100 -17.48402 -17.30374 -16.82137
-16.65793 -16.34177 -15.95840 -15.55346 -15.35754 -14.95949 -14.79249 -14.23953
-14.05998 -13.90077 -13.53007 -13.42656 -13.27754 -12.97780 -12.75045 -12.44913
-12.31997 -12.20100 -12.06974 -11.97568 -11.75929 -11.69731 -11.41865 -11.34096
-11.18054 -11.08447 -10.94201 -10.73948 -10.38856 -10.34473 -10.03587 -9.91117
-9.81164 -9.73238 -9.71144 -9.06216 -8.87510 -8.22119 -7.63483 -6.51772
-4.10263 2.04773 2.46595 3.25708 3.47484 3.51691 3.58519 3.66915
4.05658 4.13541 4.25850 4.28267 4.42529 4.46372 4.51293 4.58894
4.72100 4.80811 4.87371 4.91280 4.94019 5.00077 5.11457 5.19892
5.20123 5.32637 5.40409 5.43318 5.46714 5.50307 5.52592 5.64330
5.68824 5.80995 5.85496 5.90097 5.92036 6.06983 6.18855 6.35376
6.45738 6.69855 6.70400 6.77530 6.85645 7.17053 7.21553 7.59760
7.60262 7.70173 8.20358 8.36067 8.86578 9.22070 9.53627 10.87749
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.011715 B = 0.004180 C = 0.003607
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2389.543625 B = 6697.610187 C = 7761.506152
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.185 4.185
2 C 0.092 3.908
3 H 0.109 0.891
4 O -0.546 6.546
5 C -0.060 4.060
6 C 0.155 3.845
7 N -0.269 5.269
8 N -0.319 5.319
9 C 0.378 3.622
10 N -0.447 5.447
11 C 0.038 3.962
12 C 0.208 3.792
13 H 0.040 0.960
14 C -0.185 4.185
15 C -0.600 4.600
16 H 0.065 0.935
17 C 0.045 3.955
18 N -0.897 5.897
19 Si 1.029 2.971
20 H -0.284 1.284
21 H -0.283 1.283
22 H -0.272 1.272
23 N -0.483 5.483
24 C 0.125 3.875
25 C -0.140 4.140
26 H 0.107 0.893
27 C -0.146 4.146
28 C 0.051 3.949
29 O -0.382 6.382
30 C 0.049 3.951
31 H 0.061 0.939
32 H 0.068 0.932
33 H 0.065 0.935
34 H 0.373 0.627
35 H 0.084 0.916
36 H 0.098 0.902
37 H 0.035 0.965
38 H 0.046 0.954
39 H 0.095 0.905
40 H 0.057 0.943
41 H 0.040 0.960
42 H 0.056 0.944
43 H 0.269 0.731
44 H 0.101 0.899
45 H 0.091 0.909
46 H 0.091 0.909
47 H 0.080 0.920
48 H 0.087 0.913
49 H 0.064 0.936
50 H 0.075 0.925
51 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.554 -0.753 -4.323 23.959
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.242 4.242
2 C 0.031 3.969
3 H 0.126 0.874
4 O -0.350 6.350
5 C -0.100 4.100
6 C -0.113 4.113
7 N -0.108 5.108
8 N -0.163 5.163
9 C 0.022 3.978
10 N -0.171 5.171
11 C -0.109 4.109
12 C 0.102 3.898
13 H 0.057 0.943
14 C -0.244 4.244
15 C -0.637 4.637
16 H 0.083 0.917
17 C -0.162 4.162
18 N -0.529 5.529
19 Si 0.857 3.143
20 H -0.210 1.210
21 H -0.209 1.209
22 H -0.198 1.198
23 N -0.179 5.179
24 C 0.002 3.998
25 C -0.159 4.159
26 H 0.125 0.875
27 C -0.184 4.184
28 C -0.025 4.025
29 O -0.302 6.302
30 C -0.027 4.027
31 H 0.080 0.920
32 H 0.087 0.913
33 H 0.084 0.916
34 H 0.220 0.780
35 H 0.102 0.898
36 H 0.116 0.884
37 H 0.054 0.946
38 H 0.065 0.935
39 H 0.114 0.886
40 H 0.076 0.924
41 H 0.059 0.941
42 H 0.075 0.925
43 H 0.079 0.921
44 H 0.119 0.881
45 H 0.109 0.891
46 H 0.110 0.890
47 H 0.099 0.901
48 H 0.105 0.895
49 H 0.082 0.918
50 H 0.093 0.907
51 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges -21.868 -0.648 -1.839 21.955
hybrid contribution -1.400 -0.198 -2.639 2.993
sum -23.268 -0.846 -4.478 23.710
Atomic orbital electron populations
1.22514 0.95866 1.02708 1.03144 1.22292 0.92788 0.97589 0.84184
0.87401 1.86708 1.77100 1.28762 1.42458 1.20749 0.85602 1.03513
1.00088 1.24208 0.96657 0.94961 0.95435 1.73951 0.95183 1.21883
1.19800 1.74824 1.14086 1.11272 1.16127 1.23230 0.83922 0.93394
0.97226 1.59243 1.03797 1.50342 1.03702 1.22364 1.02044 0.99179
0.87319 1.19637 0.83748 0.93492 0.92959 0.94255 1.22863 1.01706
0.99406 1.00460 1.21826 0.98239 1.28877 1.14794 0.91674 1.25556
0.91356 0.94164 1.05129 1.70879 1.28763 1.42130 1.11170 0.84251
0.76126 0.77688 0.76249 1.21012 1.20882 1.19755 1.46211 1.06273
1.31616 1.33809 1.21748 0.99967 0.86601 0.91499 1.23160 1.01733
0.94794 0.96228 0.87517 1.23251 1.00991 0.96221 0.97984 1.23382
0.98262 0.93627 0.87241 1.88407 1.58468 1.28966 1.54328 1.23575
0.93346 0.87035 0.98777 0.92018 0.91285 0.91555 0.77974 0.89779
0.88388 0.94634 0.93531 0.88599 0.92394 0.94101 0.92462 0.92135
0.88126 0.89093 0.89016 0.90112 0.89529 0.91774 0.90738 0.91077
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.29 9.53 37.16 0.35 -0.94 16
2 C 0.09 0.91 2.86 -26.73 -0.08 0.84 16
3 H 0.11 1.25 4.20 -51.93 -0.22 1.03 16
4 O -0.55 -6.68 13.13 -35.23 -0.46 -7.14 16
5 C -0.06 -0.58 4.65 -27.88 -0.13 -0.71 16
6 C 0.15 2.30 6.96 -154.02 -1.07 1.23 16
7 N -0.27 -5.16 12.18 32.99 0.40 -4.76 16
8 N -0.32 -6.90 9.29 30.31 0.28 -6.62 16
9 C 0.38 7.37 6.65 -318.88 -2.12 5.24 16
10 N -0.45 -9.22 4.73 -176.09 -0.83 -10.05 16
11 C 0.04 0.68 8.56 60.07 0.51 1.20 16
12 C 0.21 5.05 1.63 -68.87 -0.11 4.93 16
13 H 0.04 1.05 6.61 -51.93 -0.34 0.70 16
14 C -0.19 -4.35 8.24 37.16 0.31 -4.04 16
15 C -0.60 -16.23 8.22 -34.44 -0.28 -16.52 16
16 H 0.07 1.85 7.18 -52.48 -0.38 1.48 16
17 C 0.04 1.26 5.23 -17.82 -0.09 1.17 16
18 N -0.90 -26.77 13.70 55.43 0.76 -26.01 16
19 Si 1.03 25.72 26.41 -169.99 -4.49 21.23 16
20 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16
21 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16
22 H -0.27 -6.51 6.01 56.52 0.34 -6.17 16
23 N -0.48 -7.25 2.67 -114.09 -0.30 -7.56 16
24 C 0.13 1.36 5.39 -4.04 -0.02 1.33 16
25 C -0.14 -1.55 3.24 -88.68 -0.29 -1.84 16
26 H 0.11 1.53 8.14 -51.93 -0.42 1.11 16
27 C -0.15 -1.20 6.62 -24.49 -0.16 -1.36 16
28 C 0.05 0.47 7.78 38.18 0.30 0.76 16
29 O -0.38 -4.54 11.36 -35.23 -0.40 -4.94 16
30 C 0.05 0.56 5.68 37.88 0.22 0.77 16
31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16
32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16
34 H 0.37 3.19 9.04 45.56 0.41 3.60 16
35 H 0.08 0.60 6.54 -51.93 -0.34 0.26 16
36 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16
37 H 0.04 0.65 6.48 -51.93 -0.34 0.31 16
38 H 0.05 0.67 6.23 -51.93 -0.32 0.35 16
39 H 0.10 1.85 6.60 -51.93 -0.34 1.51 16
40 H 0.06 1.34 5.89 -51.93 -0.31 1.04 16
41 H 0.04 0.91 6.16 -51.93 -0.32 0.59 16
42 H 0.06 1.40 5.30 -51.93 -0.28 1.12 16
43 H 0.27 7.91 8.73 -40.82 -0.36 7.55 16
44 H 0.10 1.06 6.19 -51.93 -0.32 0.74 16
45 H 0.09 0.70 6.80 -51.93 -0.35 0.35 16
46 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16
47 H 0.08 0.52 8.04 -51.93 -0.42 0.10 16
48 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16
49 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
50 H 0.07 0.73 4.32 -51.93 -0.22 0.51 16
51 H 0.07 0.98 7.51 -51.93 -0.39 0.59 16
LS Contribution 381.90 15.07 5.76 5.76
Total: -1.00 -34.36 381.90 -9.04 -43.40
By element:
Atomic # 1 Polarization: 11.67 SS G_CDS: -7.07 Total: 4.60 kcal
Atomic # 6 Polarization: -5.24 SS G_CDS: -2.67 Total: -7.92 kcal
Atomic # 7 Polarization: -55.30 SS G_CDS: 0.30 Total: -54.99 kcal
Atomic # 8 Polarization: -11.22 SS G_CDS: -0.86 Total: -12.08 kcal
Atomic # 14 Polarization: 25.72 SS G_CDS: -4.49 Total: 21.23 kcal
Total LS contribution 5.76 Total: 5.76 kcal
Total: -34.36 -9.04 -43.40 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001772368945.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 46.506 kcal
(2) G-P(sol) polarization free energy of solvation -34.364 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.142 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.401 kcal
(6) G-S(sol) free energy of system = (1) + (5) 3.105 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds