Wall clock time and date at job start Tue Mar 31 2020 22:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47539 * 2 1 4 4 O 1.42901 * 109.47279 * 120.00763 * 2 1 3 5 5 C 1.53004 * 109.46997 * 240.00223 * 2 1 3 6 6 C 1.50698 * 109.47230 * 173.28191 * 5 2 1 7 7 N 1.30289 * 126.34805 * 77.87672 * 6 5 2 8 8 N 1.28532 * 110.05394 * 180.02562 * 7 6 5 9 9 C 1.31217 * 109.85812 * 0.02562 * 8 7 6 10 10 N 1.38583 * 126.46931 * 179.97438 * 9 8 7 11 11 C 1.46904 * 110.99800 * 106.66707 * 10 9 8 12 12 C 1.46889 * 111.00320 * 342.71329 * 10 9 8 13 13 H 1.09003 * 109.47247 * 310.00309 * 12 10 9 14 14 C 1.52999 * 109.47418 * 70.00008 * 12 10 9 15 15 C 1.50702 * 109.47664 * 190.00288 * 12 10 9 16 16 H 1.08005 * 119.99411 * 354.51134 * 15 12 10 17 17 C 1.37873 * 120.00672 * 174.51667 * 15 12 10 18 18 N 1.31515 * 120.00136 * 158.07812 * 17 15 12 19 19 Si 1.86802 * 119.99649 * 338.07859 * 17 15 12 20 20 H 1.48504 * 109.46782 * 179.97438 * 19 17 15 21 21 H 1.48498 * 109.47197 * 299.99804 * 19 17 15 22 22 H 1.48502 * 109.47119 * 59.99931 * 19 17 15 23 23 N 1.36450 * 107.05662 * 0.22384 * 9 8 7 24 24 C 1.46500 * 127.13880 * 179.77415 * 23 9 8 25 25 C 1.52996 * 109.47367 * 276.18221 * 24 23 9 26 26 H 1.09002 * 110.74968 * 55.56342 * 25 24 23 27 27 C 1.55298 * 110.84954 * 179.26166 * 25 24 23 28 28 C 1.54944 * 100.94464 * 152.32101 * 27 25 24 29 29 O 1.43648 * 105.13739 * 323.55860 * 28 27 25 30 30 C 1.43235 * 109.96622 * 24.42392 * 29 28 27 31 31 H 1.08997 * 109.47402 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46877 * 299.99915 * 1 2 3 33 33 H 1.09001 * 109.46995 * 59.99628 * 1 2 3 34 34 H 0.96700 * 113.99638 * 59.99309 * 4 2 1 35 35 H 1.09005 * 109.46828 * 53.27852 * 5 2 1 36 36 H 1.09001 * 109.47104 * 293.28562 * 5 2 1 37 37 H 1.08996 * 109.47075 * 302.33629 * 11 10 9 38 38 H 1.08997 * 109.47056 * 62.33641 * 11 10 9 39 39 H 1.08998 * 109.47091 * 182.32904 * 11 10 9 40 40 H 1.09006 * 109.46947 * 294.63773 * 14 12 10 41 41 H 1.09002 * 109.46965 * 54.63220 * 14 12 10 42 42 H 1.08997 * 109.47269 * 174.63634 * 14 12 10 43 43 H 0.96998 * 119.99867 * 354.94711 * 18 17 15 44 44 H 1.08998 * 109.46589 * 36.18411 * 24 23 9 45 45 H 1.09001 * 109.46817 * 156.18041 * 24 23 9 46 46 H 1.08996 * 111.13013 * 270.24196 * 27 25 24 47 47 H 1.09003 * 111.12768 * 34.40286 * 27 25 24 48 48 H 1.09004 * 110.31277 * 204.63838 * 28 27 25 49 49 H 1.09003 * 110.39275 * 82.51543 * 28 27 25 50 50 H 1.09002 * 109.82709 * 238.77366 * 30 29 28 51 51 H 1.09005 * 109.82687 * 117.80795 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6738 1.1667 5 6 2.0400 -0.7212 -1.2493 6 6 3.5378 -0.5789 -1.3353 7 7 4.4180 -1.2509 -0.6488 8 7 5.6054 -0.8781 -0.9698 9 6 5.5458 0.0599 -1.8855 10 7 6.6213 0.7051 -2.4750 11 6 6.8159 0.2481 -3.8575 12 6 7.8444 0.5210 -1.6827 13 1 7.6421 0.7660 -0.6400 14 6 8.3039 -0.9347 -1.7846 15 6 8.9264 1.4274 -2.2108 16 1 8.7547 2.0095 -3.1042 17 6 10.1353 1.5136 -1.5536 18 7 11.2044 1.9315 -2.1956 19 14 10.2548 1.0367 0.2485 20 1 11.6525 1.2171 0.7166 21 1 9.3488 1.8984 1.0497 22 1 9.8582 -0.3851 0.4117 23 7 4.2248 0.2840 -2.1435 24 6 3.6598 1.2469 -3.0921 25 6 3.5741 2.6240 -2.4311 26 1 4.5498 2.9341 -2.0569 27 6 2.9955 3.6753 -3.4168 28 6 2.3431 4.6760 -2.4300 29 8 1.8121 3.8652 -1.3698 30 6 2.5255 2.6253 -1.2980 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.7209 -1.5953 1.2327 35 1 1.5817 -0.2814 -2.1352 36 1 1.7781 -1.7777 -1.1913 37 1 6.9656 -0.8315 -3.8656 38 1 5.9356 0.4973 -4.4499 39 1 7.6909 0.7395 -4.2829 40 1 7.5633 -1.5831 -1.3162 41 1 8.4145 -1.2082 -2.8339 42 1 9.2612 -1.0500 -1.2762 43 1 11.1597 2.1090 -3.1481 44 1 4.2984 1.3060 -3.9735 45 1 2.6618 0.9229 -3.3876 46 1 3.7885 4.1520 -3.9928 47 1 2.2493 3.2287 -4.0740 48 1 1.5418 5.2260 -2.9234 49 1 3.0907 5.3668 -2.0399 50 1 1.8347 1.7929 -1.4326 51 1 3.0243 2.5410 -0.3324 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772368945.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:00 Heat of formation + Delta-G solvation = 3.104575 kcal Electronic energy + Delta-G solvation = -32165.174736 eV Core-core repulsion = 28101.951331 eV Total energy + Delta-G solvation = -4063.223405 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.71593 -39.72411 -38.04839 -37.37589 -35.55140 -33.01453 -32.63981 -32.09911 -30.19232 -29.79021 -29.22209 -27.39326 -26.30925 -25.39748 -24.55491 -22.96298 -22.25734 -21.80572 -21.05983 -20.35837 -19.26100 -17.48402 -17.30374 -16.82137 -16.65793 -16.34177 -15.95840 -15.55346 -15.35754 -14.95949 -14.79249 -14.23953 -14.05998 -13.90077 -13.53007 -13.42656 -13.27754 -12.97780 -12.75045 -12.44913 -12.31997 -12.20100 -12.06974 -11.97568 -11.75929 -11.69731 -11.41865 -11.34096 -11.18054 -11.08447 -10.94201 -10.73948 -10.38856 -10.34473 -10.03587 -9.91117 -9.81164 -9.73238 -9.71144 -9.06216 -8.87510 -8.22119 -7.63483 -6.51772 -4.10263 2.04773 2.46595 3.25708 3.47484 3.51691 3.58519 3.66915 4.05658 4.13541 4.25850 4.28267 4.42529 4.46372 4.51293 4.58894 4.72100 4.80811 4.87371 4.91280 4.94019 5.00077 5.11457 5.19892 5.20123 5.32637 5.40409 5.43318 5.46714 5.50307 5.52592 5.64330 5.68824 5.80995 5.85496 5.90097 5.92036 6.06983 6.18855 6.35376 6.45738 6.69855 6.70400 6.77530 6.85645 7.17053 7.21553 7.59760 7.60262 7.70173 8.20358 8.36067 8.86578 9.22070 9.53627 10.87749 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011715 B = 0.004180 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.543625 B = 6697.610187 C = 7761.506152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.092 3.908 3 H 0.109 0.891 4 O -0.546 6.546 5 C -0.060 4.060 6 C 0.155 3.845 7 N -0.269 5.269 8 N -0.319 5.319 9 C 0.378 3.622 10 N -0.447 5.447 11 C 0.038 3.962 12 C 0.208 3.792 13 H 0.040 0.960 14 C -0.185 4.185 15 C -0.600 4.600 16 H 0.065 0.935 17 C 0.045 3.955 18 N -0.897 5.897 19 Si 1.029 2.971 20 H -0.284 1.284 21 H -0.283 1.283 22 H -0.272 1.272 23 N -0.483 5.483 24 C 0.125 3.875 25 C -0.140 4.140 26 H 0.107 0.893 27 C -0.146 4.146 28 C 0.051 3.949 29 O -0.382 6.382 30 C 0.049 3.951 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.373 0.627 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.035 0.965 38 H 0.046 0.954 39 H 0.095 0.905 40 H 0.057 0.943 41 H 0.040 0.960 42 H 0.056 0.944 43 H 0.269 0.731 44 H 0.101 0.899 45 H 0.091 0.909 46 H 0.091 0.909 47 H 0.080 0.920 48 H 0.087 0.913 49 H 0.064 0.936 50 H 0.075 0.925 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.554 -0.753 -4.323 23.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.031 3.969 3 H 0.126 0.874 4 O -0.350 6.350 5 C -0.100 4.100 6 C -0.113 4.113 7 N -0.108 5.108 8 N -0.163 5.163 9 C 0.022 3.978 10 N -0.171 5.171 11 C -0.109 4.109 12 C 0.102 3.898 13 H 0.057 0.943 14 C -0.244 4.244 15 C -0.637 4.637 16 H 0.083 0.917 17 C -0.162 4.162 18 N -0.529 5.529 19 Si 0.857 3.143 20 H -0.210 1.210 21 H -0.209 1.209 22 H -0.198 1.198 23 N -0.179 5.179 24 C 0.002 3.998 25 C -0.159 4.159 26 H 0.125 0.875 27 C -0.184 4.184 28 C -0.025 4.025 29 O -0.302 6.302 30 C -0.027 4.027 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.220 0.780 35 H 0.102 0.898 36 H 0.116 0.884 37 H 0.054 0.946 38 H 0.065 0.935 39 H 0.114 0.886 40 H 0.076 0.924 41 H 0.059 0.941 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.119 0.881 45 H 0.109 0.891 46 H 0.110 0.890 47 H 0.099 0.901 48 H 0.105 0.895 49 H 0.082 0.918 50 H 0.093 0.907 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -21.868 -0.648 -1.839 21.955 hybrid contribution -1.400 -0.198 -2.639 2.993 sum -23.268 -0.846 -4.478 23.710 Atomic orbital electron populations 1.22514 0.95866 1.02708 1.03144 1.22292 0.92788 0.97589 0.84184 0.87401 1.86708 1.77100 1.28762 1.42458 1.20749 0.85602 1.03513 1.00088 1.24208 0.96657 0.94961 0.95435 1.73951 0.95183 1.21883 1.19800 1.74824 1.14086 1.11272 1.16127 1.23230 0.83922 0.93394 0.97226 1.59243 1.03797 1.50342 1.03702 1.22364 1.02044 0.99179 0.87319 1.19637 0.83748 0.93492 0.92959 0.94255 1.22863 1.01706 0.99406 1.00460 1.21826 0.98239 1.28877 1.14794 0.91674 1.25556 0.91356 0.94164 1.05129 1.70879 1.28763 1.42130 1.11170 0.84251 0.76126 0.77688 0.76249 1.21012 1.20882 1.19755 1.46211 1.06273 1.31616 1.33809 1.21748 0.99967 0.86601 0.91499 1.23160 1.01733 0.94794 0.96228 0.87517 1.23251 1.00991 0.96221 0.97984 1.23382 0.98262 0.93627 0.87241 1.88407 1.58468 1.28966 1.54328 1.23575 0.93346 0.87035 0.98777 0.92018 0.91285 0.91555 0.77974 0.89779 0.88388 0.94634 0.93531 0.88599 0.92394 0.94101 0.92462 0.92135 0.88126 0.89093 0.89016 0.90112 0.89529 0.91774 0.90738 0.91077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.29 9.53 37.16 0.35 -0.94 16 2 C 0.09 0.91 2.86 -26.73 -0.08 0.84 16 3 H 0.11 1.25 4.20 -51.93 -0.22 1.03 16 4 O -0.55 -6.68 13.13 -35.23 -0.46 -7.14 16 5 C -0.06 -0.58 4.65 -27.88 -0.13 -0.71 16 6 C 0.15 2.30 6.96 -154.02 -1.07 1.23 16 7 N -0.27 -5.16 12.18 32.99 0.40 -4.76 16 8 N -0.32 -6.90 9.29 30.31 0.28 -6.62 16 9 C 0.38 7.37 6.65 -318.88 -2.12 5.24 16 10 N -0.45 -9.22 4.73 -176.09 -0.83 -10.05 16 11 C 0.04 0.68 8.56 60.07 0.51 1.20 16 12 C 0.21 5.05 1.63 -68.87 -0.11 4.93 16 13 H 0.04 1.05 6.61 -51.93 -0.34 0.70 16 14 C -0.19 -4.35 8.24 37.16 0.31 -4.04 16 15 C -0.60 -16.23 8.22 -34.44 -0.28 -16.52 16 16 H 0.07 1.85 7.18 -52.48 -0.38 1.48 16 17 C 0.04 1.26 5.23 -17.82 -0.09 1.17 16 18 N -0.90 -26.77 13.70 55.43 0.76 -26.01 16 19 Si 1.03 25.72 26.41 -169.99 -4.49 21.23 16 20 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.27 -6.51 6.01 56.52 0.34 -6.17 16 23 N -0.48 -7.25 2.67 -114.09 -0.30 -7.56 16 24 C 0.13 1.36 5.39 -4.04 -0.02 1.33 16 25 C -0.14 -1.55 3.24 -88.68 -0.29 -1.84 16 26 H 0.11 1.53 8.14 -51.93 -0.42 1.11 16 27 C -0.15 -1.20 6.62 -24.49 -0.16 -1.36 16 28 C 0.05 0.47 7.78 38.18 0.30 0.76 16 29 O -0.38 -4.54 11.36 -35.23 -0.40 -4.94 16 30 C 0.05 0.56 5.68 37.88 0.22 0.77 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.37 3.19 9.04 45.56 0.41 3.60 16 35 H 0.08 0.60 6.54 -51.93 -0.34 0.26 16 36 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.04 0.65 6.48 -51.93 -0.34 0.31 16 38 H 0.05 0.67 6.23 -51.93 -0.32 0.35 16 39 H 0.10 1.85 6.60 -51.93 -0.34 1.51 16 40 H 0.06 1.34 5.89 -51.93 -0.31 1.04 16 41 H 0.04 0.91 6.16 -51.93 -0.32 0.59 16 42 H 0.06 1.40 5.30 -51.93 -0.28 1.12 16 43 H 0.27 7.91 8.73 -40.82 -0.36 7.55 16 44 H 0.10 1.06 6.19 -51.93 -0.32 0.74 16 45 H 0.09 0.70 6.80 -51.93 -0.35 0.35 16 46 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.08 0.52 8.04 -51.93 -0.42 0.10 16 48 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 49 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.07 0.73 4.32 -51.93 -0.22 0.51 16 51 H 0.07 0.98 7.51 -51.93 -0.39 0.59 16 LS Contribution 381.90 15.07 5.76 5.76 Total: -1.00 -34.36 381.90 -9.04 -43.40 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -7.07 Total: 4.60 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -2.67 Total: -7.92 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: 0.30 Total: -54.99 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: -0.86 Total: -12.08 kcal Atomic # 14 Polarization: 25.72 SS G_CDS: -4.49 Total: 21.23 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.36 -9.04 -43.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772368945.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.506 kcal (2) G-P(sol) polarization free energy of solvation -34.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds