Wall clock time and date at job start Tue Mar 31 2020 22:23:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08998 * 109.47539 * 2 1
4 4 O 1.42901 * 109.47279 * 120.00763 * 2 1 3
5 5 C 1.53004 * 109.46997 * 240.00223 * 2 1 3
6 6 C 1.50698 * 109.47230 * 173.28191 * 5 2 1
7 7 N 1.30289 * 126.34805 * 77.87672 * 6 5 2
8 8 N 1.28532 * 110.05394 * 180.02562 * 7 6 5
9 9 C 1.31217 * 109.85812 * 0.02562 * 8 7 6
10 10 N 1.38583 * 126.46931 * 179.97438 * 9 8 7
11 11 C 1.46904 * 110.99800 * 106.66707 * 10 9 8
12 12 C 1.46889 * 111.00320 * 342.71329 * 10 9 8
13 13 H 1.09003 * 109.47247 * 310.00309 * 12 10 9
14 14 C 1.52999 * 109.47418 * 70.00008 * 12 10 9
15 15 C 1.50702 * 109.47664 * 190.00288 * 12 10 9
16 16 H 1.08005 * 119.99411 * 354.51134 * 15 12 10
17 17 C 1.37873 * 120.00672 * 174.51667 * 15 12 10
18 18 N 1.31515 * 120.00136 * 158.07812 * 17 15 12
19 19 Si 1.86802 * 119.99649 * 338.07859 * 17 15 12
20 20 H 1.48504 * 109.46782 * 179.97438 * 19 17 15
21 21 H 1.48498 * 109.47197 * 299.99804 * 19 17 15
22 22 H 1.48502 * 109.47119 * 59.99931 * 19 17 15
23 23 N 1.36450 * 107.05662 * 0.22384 * 9 8 7
24 24 C 1.46500 * 127.13880 * 179.77415 * 23 9 8
25 25 C 1.52996 * 109.47367 * 276.18221 * 24 23 9
26 26 H 1.09002 * 110.74968 * 55.56342 * 25 24 23
27 27 C 1.55298 * 110.84954 * 179.26166 * 25 24 23
28 28 C 1.54944 * 100.94464 * 152.32101 * 27 25 24
29 29 O 1.43648 * 105.13739 * 323.55860 * 28 27 25
30 30 C 1.43235 * 109.96622 * 24.42392 * 29 28 27
31 31 H 1.08997 * 109.47402 * 179.97438 * 1 2 3
32 32 H 1.09000 * 109.46877 * 299.99915 * 1 2 3
33 33 H 1.09001 * 109.46995 * 59.99628 * 1 2 3
34 34 H 0.96700 * 113.99638 * 59.99309 * 4 2 1
35 35 H 1.09005 * 109.46828 * 53.27852 * 5 2 1
36 36 H 1.09001 * 109.47104 * 293.28562 * 5 2 1
37 37 H 1.08996 * 109.47075 * 302.33629 * 11 10 9
38 38 H 1.08997 * 109.47056 * 62.33641 * 11 10 9
39 39 H 1.08998 * 109.47091 * 182.32904 * 11 10 9
40 40 H 1.09006 * 109.46947 * 294.63773 * 14 12 10
41 41 H 1.09002 * 109.46965 * 54.63220 * 14 12 10
42 42 H 1.08997 * 109.47269 * 174.63634 * 14 12 10
43 43 H 0.96998 * 119.99867 * 354.94711 * 18 17 15
44 44 H 1.08998 * 109.46589 * 36.18411 * 24 23 9
45 45 H 1.09001 * 109.46817 * 156.18041 * 24 23 9
46 46 H 1.08996 * 111.13013 * 270.24196 * 27 25 24
47 47 H 1.09003 * 111.12768 * 34.40286 * 27 25 24
48 48 H 1.09004 * 110.31277 * 204.63838 * 28 27 25
49 49 H 1.09003 * 110.39275 * 82.51543 * 28 27 25
50 50 H 1.09002 * 109.82709 * 238.77366 * 30 29 28
51 51 H 1.09005 * 109.82687 * 117.80795 * 30 29 28
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 8 2.0064 -0.6738 1.1667
5 6 2.0400 -0.7212 -1.2493
6 6 3.5378 -0.5789 -1.3353
7 7 4.4180 -1.2509 -0.6488
8 7 5.6054 -0.8781 -0.9698
9 6 5.5458 0.0599 -1.8855
10 7 6.6213 0.7051 -2.4750
11 6 6.8159 0.2481 -3.8575
12 6 7.8444 0.5210 -1.6827
13 1 7.6421 0.7660 -0.6400
14 6 8.3039 -0.9347 -1.7846
15 6 8.9264 1.4274 -2.2108
16 1 8.7547 2.0095 -3.1042
17 6 10.1353 1.5136 -1.5536
18 7 11.2044 1.9315 -2.1956
19 14 10.2548 1.0367 0.2485
20 1 11.6525 1.2171 0.7166
21 1 9.3488 1.8984 1.0497
22 1 9.8582 -0.3851 0.4117
23 7 4.2248 0.2840 -2.1435
24 6 3.6598 1.2469 -3.0921
25 6 3.5741 2.6240 -2.4311
26 1 4.5498 2.9341 -2.0569
27 6 2.9955 3.6753 -3.4168
28 6 2.3431 4.6760 -2.4300
29 8 1.8121 3.8652 -1.3698
30 6 2.5255 2.6253 -1.2980
31 1 -0.3634 -1.0276 -0.0005
32 1 -0.3633 0.5138 0.8900
33 1 -0.3633 0.5139 -0.8900
34 1 1.7209 -1.5953 1.2327
35 1 1.5817 -0.2814 -2.1352
36 1 1.7781 -1.7777 -1.1913
37 1 6.9656 -0.8315 -3.8656
38 1 5.9356 0.4973 -4.4499
39 1 7.6909 0.7395 -4.2829
40 1 7.5633 -1.5831 -1.3162
41 1 8.4145 -1.2082 -2.8339
42 1 9.2612 -1.0500 -1.2762
43 1 11.1597 2.1090 -3.1481
44 1 4.2984 1.3060 -3.9735
45 1 2.6618 0.9229 -3.3876
46 1 3.7885 4.1520 -3.9928
47 1 2.2493 3.2287 -4.0740
48 1 1.5418 5.2260 -2.9234
49 1 3.0907 5.3668 -2.0399
50 1 1.8347 1.7929 -1.4326
51 1 3.0243 2.5410 -0.3324
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001772368945.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:23:59
Heat of formation + Delta-G solvation = -22.000298 kcal
Electronic energy + Delta-G solvation = -32166.263365 eV
Core-core repulsion = 28101.951331 eV
Total energy + Delta-G solvation = -4064.312034 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 1.10 seconds
Orbital eigenvalues (eV)
-44.02535 -40.57705 -39.33500 -38.58851 -36.64082 -34.96611 -33.63920 -33.18338
-31.59663 -30.93494 -30.39538 -28.46499 -27.31960 -27.06228 -26.34316 -23.85201
-23.42690 -22.84110 -22.10148 -21.53100 -20.85676 -19.45407 -18.40370 -17.84045
-17.69364 -17.39303 -17.16369 -16.75788 -16.32163 -16.18349 -15.81482 -15.53970
-15.40039 -15.12444 -14.86368 -14.64374 -14.43935 -14.15396 -13.96281 -13.71216
-13.41542 -13.37323 -13.24743 -13.14413 -12.98435 -12.81700 -12.69897 -12.63643
-12.47675 -12.19615 -12.05893 -11.95085 -11.88158 -11.69307 -11.56191 -11.44674
-11.16363 -11.01873 -10.99871 -10.61224 -10.41954 -10.38697 -9.18242 -8.77242
-6.35161 0.78073 1.27609 1.44988 1.45618 1.66844 1.89410 2.41940
2.78822 2.87044 2.98836 3.23750 3.28222 3.49964 3.54259 3.61012
3.81173 3.89345 3.96538 4.03132 4.06708 4.15875 4.23363 4.27652
4.30748 4.35523 4.38613 4.41914 4.54559 4.59743 4.69905 4.70950
4.77876 4.81733 4.82287 4.88503 4.91263 4.93127 4.97485 5.03420
5.13191 5.15948 5.19389 5.32743 5.36882 5.59050 5.85985 5.88703
5.91521 6.07635 6.48290 6.62970 6.94264 7.33590 7.85521 8.61844
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.011715 B = 0.004180 C = 0.003607
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2389.543625 B = 6697.610187 C = 7761.506152
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.175 4.175
2 C 0.090 3.910
3 H 0.087 0.913
4 O -0.577 6.577
5 C -0.059 4.059
6 C 0.181 3.819
7 N -0.313 5.313
8 N -0.362 5.362
9 C 0.358 3.642
10 N -0.452 5.452
11 C 0.042 3.958
12 C 0.216 3.784
13 H 0.015 0.985
14 C -0.173 4.173
15 C -0.590 4.590
16 H 0.045 0.955
17 C 0.004 3.996
18 N -0.925 5.925
19 Si 1.060 2.940
20 H -0.280 1.280
21 H -0.279 1.279
22 H -0.259 1.259
23 N -0.473 5.473
24 C 0.118 3.882
25 C -0.139 4.139
26 H 0.063 0.937
27 C -0.133 4.133
28 C 0.043 3.957
29 O -0.398 6.398
30 C 0.055 3.945
31 H 0.080 0.920
32 H 0.059 0.941
33 H 0.085 0.915
34 H 0.387 0.613
35 H 0.123 0.877
36 H 0.119 0.881
37 H 0.030 0.970
38 H 0.087 0.913
39 H 0.076 0.924
40 H 0.060 0.940
41 H 0.047 0.953
42 H 0.043 0.957
43 H 0.260 0.740
44 H 0.108 0.892
45 H 0.138 0.862
46 H 0.096 0.904
47 H 0.114 0.886
48 H 0.114 0.886
49 H 0.051 0.949
50 H 0.098 0.902
51 H 0.034 0.966
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -27.526 -1.314 -5.863 28.174
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.233 4.233
2 C 0.030 3.970
3 H 0.105 0.895
4 O -0.385 6.385
5 C -0.098 4.098
6 C -0.087 4.087
7 N -0.151 5.151
8 N -0.206 5.206
9 C 0.000 4.000
10 N -0.175 5.175
11 C -0.105 4.105
12 C 0.108 3.892
13 H 0.033 0.967
14 C -0.232 4.232
15 C -0.628 4.628
16 H 0.063 0.937
17 C -0.197 4.197
18 N -0.560 5.560
19 Si 0.884 3.116
20 H -0.206 1.206
21 H -0.205 1.205
22 H -0.184 1.184
23 N -0.168 5.168
24 C -0.004 4.004
25 C -0.159 4.159
26 H 0.082 0.918
27 C -0.171 4.171
28 C -0.033 4.033
29 O -0.318 6.318
30 C -0.021 4.021
31 H 0.099 0.901
32 H 0.078 0.922
33 H 0.104 0.896
34 H 0.236 0.764
35 H 0.141 0.859
36 H 0.137 0.863
37 H 0.049 0.951
38 H 0.106 0.894
39 H 0.095 0.905
40 H 0.079 0.921
41 H 0.066 0.934
42 H 0.062 0.938
43 H 0.070 0.930
44 H 0.126 0.874
45 H 0.156 0.844
46 H 0.114 0.886
47 H 0.132 0.868
48 H 0.132 0.868
49 H 0.069 0.931
50 H 0.116 0.884
51 H 0.052 0.948
Dipole moment (debyes) X Y Z Total
from point charges -25.875 -1.208 -3.400 26.126
hybrid contribution -0.326 0.037 -2.178 2.203
sum -26.201 -1.171 -5.578 26.814
Atomic orbital electron populations
1.22424 0.92981 1.04182 1.03668 1.22323 0.94867 0.96288 0.83507
0.89524 1.86670 1.77938 1.30090 1.43771 1.21102 0.81748 1.05382
1.01588 1.25215 0.98394 0.92410 0.92716 1.73857 0.95157 1.24092
1.22028 1.74651 1.16047 1.12743 1.17161 1.22984 0.85138 0.94034
0.97818 1.59064 1.02881 1.51280 1.04264 1.22374 1.03186 0.98523
0.86377 1.19272 0.84809 0.93069 0.92010 0.96714 1.22700 1.00888
0.98879 1.00710 1.21927 0.98915 1.28323 1.13631 0.93663 1.26493
0.91480 0.94113 1.07660 1.70957 1.29693 1.44541 1.10818 0.83816
0.76297 0.78338 0.73121 1.20583 1.20460 1.18353 1.46375 1.04569
1.31824 1.34079 1.22187 1.02272 0.85389 0.90527 1.23056 0.99677
0.96036 0.97149 0.91825 1.23257 1.01622 0.94833 0.97348 1.23591
0.99066 0.93634 0.86997 1.88392 1.58494 1.29329 1.55611 1.23491
0.93648 0.87874 0.97094 0.90084 0.92181 0.89628 0.76388 0.85875
0.86257 0.95101 0.89440 0.90536 0.92093 0.93416 0.93825 0.93036
0.87412 0.84398 0.88563 0.86795 0.86814 0.93070 0.88391 0.94770
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.76 9.53 71.98 0.69 -1.08 16
2 C 0.09 1.55 2.86 30.60 0.09 1.64 16
3 H 0.09 1.87 4.20 -2.39 -0.01 1.86 16
4 O -0.58 -13.47 13.13 -148.98 -1.96 -15.43 16
5 C -0.06 -0.90 4.65 29.85 0.14 -0.76 16
6 C 0.18 5.02 6.96 137.64 0.96 5.97 16
7 N -0.31 -11.87 12.18 -49.54 -0.60 -12.47 16
8 N -0.36 -15.81 9.29 -58.00 -0.54 -16.35 16
9 C 0.36 13.88 6.65 260.11 1.73 15.61 16
10 N -0.45 -18.78 4.73 -711.03 -3.37 -22.15 16
11 C 0.04 1.49 8.56 127.69 1.09 2.58 16
12 C 0.22 10.74 1.63 44.17 0.07 10.82 16
13 H 0.01 0.82 6.61 -2.39 -0.02 0.80 16
14 C -0.17 -8.24 8.24 71.98 0.59 -7.64 16
15 C -0.59 -32.90 8.22 25.60 0.21 -32.69 16
16 H 0.05 2.66 7.18 -2.91 -0.02 2.64 16
17 C 0.00 0.24 5.23 84.65 0.44 0.68 16
18 N -0.93 -56.71 13.70 21.45 0.29 -56.42 16
19 Si 1.06 53.12 26.41 68.60 1.81 54.93 16
20 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16
21 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16
22 H -0.26 -12.32 6.01 99.48 0.60 -11.72 16
23 N -0.47 -13.32 2.67 -514.86 -1.37 -14.69 16
24 C 0.12 2.13 5.39 86.38 0.47 2.59 16
25 C -0.14 -2.85 3.24 -9.54 -0.03 -2.88 16
26 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16
27 C -0.13 -1.74 6.62 32.05 0.21 -1.53 16
28 C 0.04 0.69 7.78 72.65 0.56 1.25 16
29 O -0.40 -8.75 11.36 -148.98 -1.69 -10.44 16
30 C 0.06 1.18 5.68 72.45 0.41 1.59 16
31 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16
32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16
33 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16
34 H 0.39 6.02 9.04 -74.06 -0.67 5.35 16
35 H 0.12 0.95 6.54 -2.38 -0.02 0.94 16
36 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16
37 H 0.03 1.10 6.48 -2.39 -0.02 1.09 16
38 H 0.09 2.31 6.23 -2.39 -0.01 2.30 16
39 H 0.08 2.98 6.60 -2.39 -0.02 2.96 16
40 H 0.06 2.88 5.89 -2.38 -0.01 2.86 16
41 H 0.05 2.15 6.16 -2.39 -0.01 2.14 16
42 H 0.04 2.15 5.30 -2.39 -0.01 2.14 16
43 H 0.26 15.87 8.73 -92.71 -0.81 15.06 16
44 H 0.11 1.85 6.19 -2.39 -0.01 1.84 16
45 H 0.14 1.25 6.80 -2.39 -0.02 1.23 16
46 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16
47 H 0.11 0.80 8.04 -2.39 -0.02 0.78 16
48 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16
49 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16
50 H 0.10 1.59 4.32 -2.39 -0.01 1.58 16
51 H 0.03 0.98 7.51 -2.38 -0.02 0.96 16
Total: -1.00 -80.08 381.90 0.36 -79.72
By element:
Atomic # 1 Polarization: 16.98 SS G_CDS: 0.15 Total: 17.13 kcal
Atomic # 6 Polarization: -11.48 SS G_CDS: 7.63 Total: -3.84 kcal
Atomic # 7 Polarization: -116.49 SS G_CDS: -5.59 Total: -122.08 kcal
Atomic # 8 Polarization: -22.21 SS G_CDS: -3.65 Total: -25.86 kcal
Atomic # 14 Polarization: 53.12 SS G_CDS: 1.81 Total: 54.93 kcal
Total: -80.08 0.36 -79.72 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001772368945.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 57.720 kcal
(2) G-P(sol) polarization free energy of solvation -80.079 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.359 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.359 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.721 kcal
(6) G-S(sol) free energy of system = (1) + (5) -22.000 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.10 seconds