Wall clock time and date at job start Tue Mar 31 2020 21:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.46862 * 2 1 4 4 C 1.46504 * 119.99861 * 90.00753 * 3 2 1 5 5 C 1.50694 * 109.47388 * 89.99435 * 4 3 2 6 6 H 1.07996 * 119.99968 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99887 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00115 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99962 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47677 * 89.99774 * 9 7 5 11 11 H 1.48503 * 109.47062 * 209.99636 * 9 7 5 12 12 H 1.48503 * 109.47219 * 329.99219 * 9 7 5 13 13 C 1.34777 * 119.99989 * 269.99727 * 3 2 1 14 14 O 1.21284 * 119.99727 * 180.02562 * 13 3 2 15 15 C 1.50694 * 120.00138 * 0.02562 * 13 3 2 16 16 N 1.46904 * 109.47138 * 173.74676 * 15 13 3 17 17 C 1.46847 * 110.99628 * 169.40062 * 16 15 13 18 18 C 1.53045 * 109.51901 * 185.84050 * 17 16 15 19 19 C 1.53123 * 109.27728 * 300.82154 * 18 17 16 20 20 N 1.46498 * 109.52151 * 177.56204 * 19 18 17 21 21 C 1.47050 * 125.40834 * 120.03593 * 20 19 18 22 22 C 1.54113 * 103.86032 * 179.86878 * 21 20 19 23 23 N 1.47046 * 103.85866 * 0.37239 * 22 21 20 24 24 C 1.33942 * 125.40789 * 300.34143 * 20 19 18 25 25 O 1.21583 * 123.04505 * 359.97438 * 24 20 19 26 26 C 1.53119 * 109.16167 * 57.65418 * 19 18 17 27 27 C 1.46844 * 110.99798 * 293.60859 * 16 15 13 28 28 H 1.08999 * 109.47660 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47527 * 299.99736 * 1 2 3 30 30 H 1.09005 * 109.47574 * 59.99779 * 1 2 3 31 31 H 1.09005 * 109.46858 * 240.00008 * 2 1 3 32 32 H 1.08996 * 109.46801 * 120.00348 * 2 1 3 33 33 H 1.09007 * 109.46656 * 209.99621 * 4 3 2 34 34 H 1.09002 * 109.46752 * 329.99011 * 4 3 2 35 35 H 0.96993 * 120.00072 * 180.02562 * 8 7 5 36 36 H 1.09003 * 109.46951 * 293.74776 * 15 13 3 37 37 H 1.09004 * 109.47003 * 53.74657 * 15 13 3 38 38 H 1.09001 * 109.46732 * 305.85469 * 17 16 15 39 39 H 1.09002 * 109.46367 * 65.82828 * 17 16 15 40 40 H 1.08999 * 109.49783 * 180.88228 * 18 17 16 41 41 H 1.08996 * 109.50458 * 60.75957 * 18 17 16 42 42 H 1.09005 * 109.57458 * 297.71901 * 19 18 17 43 43 H 1.09001 * 110.55406 * 298.59363 * 21 20 19 44 44 H 1.08995 * 110.55004 * 61.40702 * 21 20 19 45 45 H 1.08999 * 110.75716 * 241.67773 * 22 21 20 46 46 H 1.09001 * 110.46178 * 118.92708 * 22 21 20 47 47 H 0.97001 * 125.40630 * 179.75132 * 23 22 21 48 48 H 1.08996 * 109.50213 * 182.40576 * 26 19 18 49 49 H 1.09000 * 109.53247 * 62.30953 * 26 19 18 50 50 H 1.08992 * 109.46414 * 294.17759 * 27 16 15 51 51 H 1.08998 * 109.46109 * 54.15885 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2625 2.0717 1.2688 5 6 3.6858 1.8349 1.7037 6 1 4.3426 1.2301 1.0961 7 6 4.1494 2.3903 2.8774 8 7 5.3914 2.1832 3.2574 9 14 3.0131 3.4358 3.9287 10 1 2.3082 2.5699 4.9077 11 1 3.8105 4.4566 4.6550 12 1 2.0173 4.1123 3.0592 13 6 2.2429 2.0165 -1.1672 14 8 2.6476 3.1598 -1.1672 15 6 1.9913 1.3063 -2.4723 16 7 2.1650 2.2499 -3.5847 17 6 2.1765 1.5470 -4.8740 18 6 2.5036 2.5378 -5.9936 19 6 1.4520 3.6507 -6.0071 20 7 1.7923 4.6333 -7.0390 21 6 0.9466 4.9899 -8.1879 22 6 1.7709 6.0553 -8.9366 23 7 2.9974 6.1791 -8.1350 24 6 2.9257 5.3454 -7.0890 25 8 3.8091 5.2446 -6.2597 26 6 1.4267 4.3349 -4.6375 27 6 1.1308 3.2920 -3.5572 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.0955 3.1410 1.1384 34 1 1.5817 1.6876 2.0284 35 1 5.7174 2.5737 4.0832 36 1 2.6978 0.4833 -2.5802 37 1 0.9738 0.9154 -2.4829 38 1 2.9314 0.7611 -4.8525 39 1 1.1969 1.1047 -5.0552 40 1 2.4967 2.0189 -6.9521 41 1 3.4890 2.9704 -5.8204 42 1 0.4716 3.2242 -6.2194 43 1 0.7759 4.1200 -8.8221 44 1 -0.0007 5.4099 -7.8499 45 1 1.2370 7.0051 -8.9681 46 1 2.0057 5.7159 -9.9454 47 1 3.7406 6.7704 -8.3325 48 1 0.6504 5.0998 -4.6272 49 1 2.3948 4.7962 -4.4426 50 1 0.1562 2.8414 -3.7446 51 1 1.1264 3.7735 -2.5794 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053285845.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:02 Heat of formation + Delta-G solvation = -29.246126 kcal Electronic energy + Delta-G solvation = -30692.577600 eV Core-core repulsion = 26627.951364 eV Total energy + Delta-G solvation = -4064.626236 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.28796 -39.56118 -38.12238 -36.40390 -35.35601 -34.71505 -32.67444 -31.65887 -30.83164 -30.27820 -29.10935 -28.23866 -26.42650 -23.79923 -23.29616 -23.16696 -22.91784 -21.88189 -20.73016 -19.41428 -18.24037 -17.87553 -16.86054 -16.75428 -16.58824 -16.17487 -15.67603 -15.24658 -14.99363 -14.74208 -14.42185 -14.27095 -14.05938 -13.98023 -13.71504 -13.61802 -13.42995 -13.06489 -12.92271 -12.69109 -12.58591 -12.51694 -12.21807 -12.08387 -11.76353 -11.63626 -11.44918 -11.36544 -11.08683 -10.92483 -10.73187 -10.65726 -10.63370 -10.42310 -10.02591 -9.93546 -9.45880 -9.43157 -8.87764 -8.72431 -8.52094 -8.07788 -7.61063 -6.01217 -3.99244 2.35977 3.07144 3.31486 3.39801 3.44580 3.46802 3.62650 3.65773 4.03848 4.19760 4.46191 4.46301 4.52631 4.80445 4.90851 4.93668 5.00814 5.04121 5.19741 5.24590 5.28469 5.31629 5.32415 5.36861 5.44079 5.47514 5.58097 5.58726 5.62083 5.68157 5.73816 5.85605 5.95923 5.99380 6.16667 6.19506 6.32290 6.41295 6.47111 6.67396 6.73104 6.89876 7.02046 7.14291 7.25342 7.38586 7.46182 7.69558 8.36442 8.51409 8.55577 9.02618 9.13604 9.59434 11.12423 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.016595 B = 0.002621 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.806996 B =10679.491267 C =11565.519046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.597 5.597 4 C 0.218 3.782 5 C -0.525 4.525 6 H 0.074 0.926 7 C 0.071 3.929 8 N -0.898 5.898 9 Si 0.875 3.125 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.264 1.264 13 C 0.507 3.493 14 O -0.517 6.517 15 C 0.040 3.960 16 N -0.517 5.517 17 C 0.064 3.936 18 C -0.131 4.131 19 C 0.186 3.814 20 N -0.631 5.631 21 C 0.091 3.909 22 C 0.094 3.906 23 N -0.748 5.748 24 C 0.695 3.305 25 O -0.568 6.568 26 C -0.128 4.128 27 C 0.062 3.938 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.040 0.960 34 H 0.023 0.977 35 H 0.264 0.736 36 H 0.099 0.901 37 H 0.055 0.945 38 H 0.079 0.921 39 H 0.030 0.970 40 H 0.064 0.936 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.428 0.572 48 H 0.063 0.937 49 H 0.095 0.905 50 H 0.024 0.976 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.591 0.232 -26.326 30.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.330 5.330 4 C 0.098 3.902 5 C -0.564 4.564 6 H 0.092 0.908 7 C -0.131 4.131 8 N -0.537 5.537 9 Si 0.702 3.298 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.189 1.189 13 C 0.293 3.707 14 O -0.392 6.392 15 C -0.091 4.091 16 N -0.242 5.242 17 C -0.065 4.065 18 C -0.169 4.169 19 C 0.084 3.916 20 N -0.370 5.370 21 C -0.033 4.033 22 C -0.032 4.032 23 N -0.411 5.411 24 C 0.396 3.604 25 O -0.444 6.444 26 C -0.167 4.167 27 C -0.067 4.067 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.057 0.943 34 H 0.041 0.959 35 H 0.074 0.926 36 H 0.117 0.883 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.048 0.952 40 H 0.083 0.917 41 H 0.112 0.888 42 H 0.102 0.898 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.098 0.902 46 H 0.097 0.903 47 H 0.269 0.731 48 H 0.082 0.918 49 H 0.113 0.887 50 H 0.042 0.958 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.392 0.958 -25.562 29.351 hybrid contribution -1.043 0.289 0.311 1.126 sum -15.435 1.247 -25.251 29.621 Atomic orbital electron populations 1.22237 0.96977 1.01446 1.02083 1.21410 0.93205 0.84122 1.03015 1.47952 1.64735 1.13309 1.07015 1.19607 0.97021 0.93571 0.80039 1.21346 0.95436 1.32616 1.06991 0.90765 1.24863 0.95003 0.95802 0.97421 1.69900 1.15192 1.45111 1.23497 0.86865 0.81324 0.80898 0.80753 1.20219 1.21009 1.18865 1.20174 0.78667 0.87185 0.84666 1.90678 1.43959 1.17886 1.86725 1.22037 1.01020 0.95387 0.90682 1.61465 1.48922 1.12679 1.01138 1.22023 0.99895 0.95870 0.88694 1.22003 1.01744 0.95771 0.97417 1.20897 0.97789 0.87009 0.85955 1.47347 1.18904 1.43457 1.27285 1.22363 0.95108 0.97902 0.87878 1.22284 0.85943 0.99304 0.95638 1.45172 1.21885 1.45875 1.28161 1.15965 0.82899 0.79507 0.82060 1.91032 1.40989 1.70351 1.42031 1.21975 1.04447 0.97866 0.92408 1.22112 0.90753 0.92766 1.01029 0.92068 0.92240 0.93188 0.91583 0.89760 0.94254 0.95891 0.92645 0.88257 0.92734 0.90249 0.95177 0.91707 0.88773 0.89842 0.90251 0.90234 0.90201 0.90262 0.73094 0.91835 0.88657 0.95805 0.88640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 10.18 37.16 0.38 -1.73 16 2 C 0.11 1.66 5.84 -4.05 -0.02 1.64 16 3 N -0.60 -12.44 2.46 -175.06 -0.43 -12.87 16 4 C 0.22 5.45 4.23 -5.19 -0.02 5.43 16 5 C -0.53 -15.51 9.94 -34.44 -0.34 -15.85 16 6 H 0.07 2.41 8.06 -52.49 -0.42 1.99 16 7 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 8 N -0.90 -28.48 13.96 55.43 0.77 -27.71 16 9 Si 0.87 22.13 27.47 -169.99 -4.67 17.46 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.26 -6.53 6.54 56.52 0.37 -6.16 16 13 C 0.51 10.64 7.20 -10.99 -0.08 10.56 16 14 O -0.52 -13.28 14.29 5.55 0.08 -13.20 16 15 C 0.04 0.61 3.91 -4.98 -0.02 0.59 16 16 N -0.52 -8.05 4.35 -236.11 -1.03 -9.08 16 17 C 0.06 0.75 5.46 -3.83 -0.02 0.73 16 18 C -0.13 -1.55 5.42 -26.64 -0.14 -1.69 16 19 C 0.19 2.03 2.85 -67.81 -0.19 1.84 16 20 N -0.63 -6.46 2.85 -171.05 -0.49 -6.94 16 21 C 0.09 0.50 7.65 -3.16 -0.02 0.48 16 22 C 0.09 0.43 8.06 -3.16 -0.03 0.40 16 23 N -0.75 -6.40 6.37 -64.70 -0.41 -6.81 16 24 C 0.70 8.99 8.06 -88.40 -0.71 8.27 16 25 O -0.57 -10.30 14.95 5.29 0.08 -10.22 16 26 C -0.13 -1.77 5.42 -26.65 -0.14 -1.92 16 27 C 0.06 0.91 5.12 -3.83 -0.02 0.89 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.59 7.12 -51.93 -0.37 0.22 16 31 H 0.07 0.87 6.61 -51.93 -0.34 0.52 16 32 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 33 H 0.04 1.07 6.48 -51.92 -0.34 0.73 16 34 H 0.02 0.54 7.50 -51.93 -0.39 0.15 16 35 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 36 H 0.10 1.41 7.55 -51.93 -0.39 1.02 16 37 H 0.05 0.70 6.83 -51.93 -0.35 0.34 16 38 H 0.08 0.89 8.01 -51.93 -0.42 0.47 16 39 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.09 1.49 6.70 -51.93 -0.35 1.14 16 42 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 43 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 46 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 47 H 0.43 3.06 8.96 -40.82 -0.37 2.70 16 48 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.09 1.73 6.73 -51.93 -0.35 1.38 16 50 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 51 H 0.10 1.72 6.06 -51.93 -0.31 1.41 16 LS Contribution 394.76 15.07 5.95 5.95 Total: -1.00 -39.62 394.76 -10.27 -49.89 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -8.64 Total: 1.84 kcal Atomic # 6 Polarization: 13.17 SS G_CDS: -1.49 Total: 11.68 kcal Atomic # 7 Polarization: -61.83 SS G_CDS: -1.58 Total: -63.41 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: 0.16 Total: -23.42 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.67 Total: 17.46 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -39.62 -10.27 -49.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053285845.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.643 kcal (2) G-P(sol) polarization free energy of solvation -39.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds