Wall clock time and date at job start Tue Mar 31 2020 21:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.46862 * 2 1 4 4 C 1.46504 * 119.99861 * 90.00753 * 3 2 1 5 5 C 1.50694 * 109.47388 * 89.99435 * 4 3 2 6 6 H 1.07996 * 119.99968 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99887 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00115 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99962 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47677 * 89.99774 * 9 7 5 11 11 H 1.48503 * 109.47062 * 209.99636 * 9 7 5 12 12 H 1.48503 * 109.47219 * 329.99219 * 9 7 5 13 13 C 1.34777 * 119.99989 * 269.99727 * 3 2 1 14 14 O 1.21284 * 119.99727 * 180.02562 * 13 3 2 15 15 C 1.50694 * 120.00138 * 0.02562 * 13 3 2 16 16 N 1.46904 * 109.47138 * 173.74676 * 15 13 3 17 17 C 1.46847 * 110.99628 * 169.40062 * 16 15 13 18 18 C 1.53045 * 109.51901 * 185.84050 * 17 16 15 19 19 C 1.53123 * 109.27728 * 300.82154 * 18 17 16 20 20 N 1.46498 * 109.52151 * 177.56204 * 19 18 17 21 21 C 1.47050 * 125.40834 * 120.03593 * 20 19 18 22 22 C 1.54113 * 103.86032 * 179.86878 * 21 20 19 23 23 N 1.47046 * 103.85866 * 0.37239 * 22 21 20 24 24 C 1.33942 * 125.40789 * 300.34143 * 20 19 18 25 25 O 1.21583 * 123.04505 * 359.97438 * 24 20 19 26 26 C 1.53119 * 109.16167 * 57.65418 * 19 18 17 27 27 C 1.46844 * 110.99798 * 293.60859 * 16 15 13 28 28 H 1.08999 * 109.47660 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47527 * 299.99736 * 1 2 3 30 30 H 1.09005 * 109.47574 * 59.99779 * 1 2 3 31 31 H 1.09005 * 109.46858 * 240.00008 * 2 1 3 32 32 H 1.08996 * 109.46801 * 120.00348 * 2 1 3 33 33 H 1.09007 * 109.46656 * 209.99621 * 4 3 2 34 34 H 1.09002 * 109.46752 * 329.99011 * 4 3 2 35 35 H 0.96993 * 120.00072 * 180.02562 * 8 7 5 36 36 H 1.09003 * 109.46951 * 293.74776 * 15 13 3 37 37 H 1.09004 * 109.47003 * 53.74657 * 15 13 3 38 38 H 1.09001 * 109.46732 * 305.85469 * 17 16 15 39 39 H 1.09002 * 109.46367 * 65.82828 * 17 16 15 40 40 H 1.08999 * 109.49783 * 180.88228 * 18 17 16 41 41 H 1.08996 * 109.50458 * 60.75957 * 18 17 16 42 42 H 1.09005 * 109.57458 * 297.71901 * 19 18 17 43 43 H 1.09001 * 110.55406 * 298.59363 * 21 20 19 44 44 H 1.08995 * 110.55004 * 61.40702 * 21 20 19 45 45 H 1.08999 * 110.75716 * 241.67773 * 22 21 20 46 46 H 1.09001 * 110.46178 * 118.92708 * 22 21 20 47 47 H 0.97001 * 125.40630 * 179.75132 * 23 22 21 48 48 H 1.08996 * 109.50213 * 182.40576 * 26 19 18 49 49 H 1.09000 * 109.53247 * 62.30953 * 26 19 18 50 50 H 1.08992 * 109.46414 * 294.17759 * 27 16 15 51 51 H 1.08998 * 109.46109 * 54.15885 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2625 2.0717 1.2688 5 6 3.6858 1.8349 1.7037 6 1 4.3426 1.2301 1.0961 7 6 4.1494 2.3903 2.8774 8 7 5.3914 2.1832 3.2574 9 14 3.0131 3.4358 3.9287 10 1 2.3082 2.5699 4.9077 11 1 3.8105 4.4566 4.6550 12 1 2.0173 4.1123 3.0592 13 6 2.2429 2.0165 -1.1672 14 8 2.6476 3.1598 -1.1672 15 6 1.9913 1.3063 -2.4723 16 7 2.1650 2.2499 -3.5847 17 6 2.1765 1.5470 -4.8740 18 6 2.5036 2.5378 -5.9936 19 6 1.4520 3.6507 -6.0071 20 7 1.7923 4.6333 -7.0390 21 6 0.9466 4.9899 -8.1879 22 6 1.7709 6.0553 -8.9366 23 7 2.9974 6.1791 -8.1350 24 6 2.9257 5.3454 -7.0890 25 8 3.8091 5.2446 -6.2597 26 6 1.4267 4.3349 -4.6375 27 6 1.1308 3.2920 -3.5572 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.0955 3.1410 1.1384 34 1 1.5817 1.6876 2.0284 35 1 5.7174 2.5737 4.0832 36 1 2.6978 0.4833 -2.5802 37 1 0.9738 0.9154 -2.4829 38 1 2.9314 0.7611 -4.8525 39 1 1.1969 1.1047 -5.0552 40 1 2.4967 2.0189 -6.9521 41 1 3.4890 2.9704 -5.8204 42 1 0.4716 3.2242 -6.2194 43 1 0.7759 4.1200 -8.8221 44 1 -0.0007 5.4099 -7.8499 45 1 1.2370 7.0051 -8.9681 46 1 2.0057 5.7159 -9.9454 47 1 3.7406 6.7704 -8.3325 48 1 0.6504 5.0998 -4.6272 49 1 2.3948 4.7962 -4.4426 50 1 0.1562 2.8414 -3.7446 51 1 1.1264 3.7735 -2.5794 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053285845.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:01 Heat of formation + Delta-G solvation = -61.930696 kcal Electronic energy + Delta-G solvation = -30693.994909 eV Core-core repulsion = 26627.951364 eV Total energy + Delta-G solvation = -4066.043546 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.07610 -40.98521 -39.32523 -37.35107 -36.94253 -35.71870 -34.84078 -32.66346 -31.88682 -31.74982 -30.08791 -29.49679 -27.84244 -25.03809 -24.34029 -24.16104 -23.81105 -23.51539 -21.67106 -20.32670 -19.82152 -19.10469 -18.63768 -18.02266 -17.44269 -17.26488 -16.97642 -16.55750 -16.26686 -15.79715 -15.72565 -15.58900 -15.08464 -14.99065 -14.81675 -14.69224 -14.65353 -14.51913 -14.15462 -13.89443 -13.75145 -13.46812 -13.29339 -13.21957 -13.04820 -12.99568 -12.79777 -12.58443 -12.46108 -12.34840 -12.13463 -12.04101 -11.86330 -11.77489 -11.65794 -11.61542 -10.96952 -10.82952 -10.52950 -10.26905 -9.41445 -9.37560 -9.11678 -8.34802 -6.39389 1.28527 1.34378 1.45142 1.65006 1.87029 2.15986 2.23837 2.30220 2.97629 3.00104 3.08671 3.63473 3.68519 3.71586 3.86775 4.02145 4.12367 4.21259 4.25497 4.26833 4.35249 4.42706 4.43925 4.46304 4.49219 4.59801 4.64663 4.68118 4.75447 4.78410 4.85878 4.87915 4.94520 4.97008 5.02224 5.03166 5.03617 5.18053 5.27354 5.40546 5.45516 5.48066 5.69333 5.83397 6.02375 6.23003 6.24082 6.26619 6.62058 6.63464 6.78927 7.21937 7.53067 7.64556 8.82641 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.016595 B = 0.002621 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.806996 B =10679.491267 C =11565.519046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.098 3.902 3 N -0.604 5.604 4 C 0.229 3.771 5 C -0.534 4.534 6 H 0.025 0.975 7 C 0.007 3.993 8 N -0.947 5.947 9 Si 0.950 3.050 10 H -0.247 1.247 11 H -0.283 1.283 12 H -0.258 1.258 13 C 0.495 3.505 14 O -0.580 6.580 15 C 0.056 3.944 16 N -0.556 5.556 17 C 0.067 3.933 18 C -0.126 4.126 19 C 0.190 3.810 20 N -0.632 5.632 21 C 0.086 3.914 22 C 0.092 3.908 23 N -0.744 5.744 24 C 0.680 3.320 25 O -0.637 6.637 26 C -0.122 4.122 27 C 0.068 3.932 28 H 0.095 0.905 29 H 0.045 0.955 30 H 0.061 0.939 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.014 0.986 34 H 0.047 0.953 35 H 0.268 0.732 36 H 0.114 0.886 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.092 0.908 41 H 0.041 0.959 42 H 0.128 0.872 43 H 0.107 0.893 44 H 0.099 0.901 45 H 0.101 0.899 46 H 0.106 0.894 47 H 0.431 0.569 48 H 0.073 0.927 49 H 0.036 0.964 50 H 0.062 0.938 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.262 -1.262 -28.883 35.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.025 4.025 3 N -0.336 5.336 4 C 0.106 3.894 5 C -0.573 4.573 6 H 0.044 0.956 7 C -0.190 4.190 8 N -0.588 5.588 9 Si 0.772 3.228 10 H -0.171 1.171 11 H -0.209 1.209 12 H -0.182 1.182 13 C 0.283 3.717 14 O -0.459 6.459 15 C -0.075 4.075 16 N -0.282 5.282 17 C -0.061 4.061 18 C -0.164 4.164 19 C 0.088 3.912 20 N -0.369 5.369 21 C -0.036 4.036 22 C -0.032 4.032 23 N -0.406 5.406 24 C 0.380 3.620 25 O -0.519 6.519 26 C -0.161 4.161 27 C -0.060 4.060 28 H 0.114 0.886 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.114 0.886 32 H 0.089 0.911 33 H 0.032 0.968 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.132 0.868 37 H 0.114 0.886 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.110 0.890 41 H 0.060 0.940 42 H 0.146 0.854 43 H 0.125 0.875 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.124 0.876 47 H 0.272 0.728 48 H 0.092 0.908 49 H 0.055 0.945 50 H 0.080 0.920 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -19.137 -0.584 -28.200 34.085 hybrid contribution 0.506 0.749 1.010 1.356 sum -18.631 0.165 -27.190 32.961 Atomic orbital electron populations 1.22148 0.93796 1.03657 1.02034 1.21773 0.95726 0.81073 1.03881 1.48094 1.64608 1.15267 1.05657 1.19217 0.94502 0.92905 0.82790 1.21587 0.97249 1.31869 1.06560 0.95628 1.25900 0.96814 0.97207 0.99085 1.70063 1.17528 1.46701 1.24463 0.85681 0.79063 0.79074 0.78941 1.17099 1.20850 1.18216 1.21328 0.77131 0.86744 0.86473 1.90650 1.46651 1.20832 1.87761 1.21942 1.03581 0.94636 0.87320 1.61322 1.50358 1.13726 1.02811 1.22089 1.02100 0.95459 0.86407 1.21935 0.99418 0.96275 0.98819 1.20885 0.99376 0.86504 0.84462 1.47392 1.18694 1.42612 1.28233 1.22770 0.95025 0.99314 0.86453 1.22642 0.84080 1.00447 0.96031 1.45229 1.23360 1.44570 1.27417 1.16423 0.83049 0.80293 0.82241 1.90985 1.43593 1.72507 1.44786 1.21851 1.01453 0.98091 0.94673 1.21954 0.92340 0.92767 0.98913 0.88616 0.93599 0.91971 0.88625 0.91138 0.96790 0.93512 0.92321 0.86836 0.88607 0.89971 0.91151 0.88997 0.93969 0.85399 0.87524 0.88249 0.88102 0.87631 0.72765 0.90793 0.94475 0.91979 0.93091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.38 10.18 71.98 0.73 -2.65 16 2 C 0.10 2.87 5.84 86.38 0.50 3.38 16 3 N -0.60 -25.43 2.46 -826.16 -2.03 -27.46 16 4 C 0.23 11.71 4.23 85.63 0.36 12.07 16 5 C -0.53 -33.08 9.94 25.60 0.25 -32.83 16 6 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 7 C 0.01 0.46 5.47 84.65 0.46 0.93 16 8 N -0.95 -62.55 13.96 21.45 0.30 -62.25 16 9 Si 0.95 46.62 27.47 68.60 1.88 48.51 16 10 H -0.25 -10.93 7.11 99.48 0.71 -10.23 16 11 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 12 H -0.26 -12.32 6.54 99.48 0.65 -11.67 16 13 C 0.49 21.28 7.20 87.66 0.63 21.92 16 14 O -0.58 -31.81 14.29 -3.04 -0.04 -31.85 16 15 C 0.06 1.63 3.91 85.55 0.33 1.97 16 16 N -0.56 -17.06 4.35 -900.91 -3.92 -20.97 16 17 C 0.07 1.40 5.46 86.33 0.47 1.88 16 18 C -0.13 -2.84 5.42 30.65 0.17 -2.67 16 19 C 0.19 3.78 2.85 45.07 0.13 3.91 16 20 N -0.63 -11.93 2.85 -813.82 -2.32 -14.25 16 21 C 0.09 0.60 7.65 86.65 0.66 1.27 16 22 C 0.09 0.54 8.06 86.65 0.70 1.24 16 23 N -0.74 -12.31 6.37 -477.34 -3.04 -15.35 16 24 C 0.68 18.09 8.06 179.57 1.45 19.54 16 25 O -0.64 -25.39 14.95 -3.98 -0.06 -25.45 16 26 C -0.12 -3.44 5.42 30.65 0.17 -3.27 16 27 C 0.07 1.99 5.12 86.33 0.44 2.43 16 28 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.06 1.19 7.12 -2.38 -0.02 1.18 16 31 H 0.10 2.23 6.61 -2.38 -0.02 2.22 16 32 H 0.07 2.26 8.07 -2.39 -0.02 2.24 16 33 H 0.01 0.79 6.48 -2.38 -0.02 0.77 16 34 H 0.05 2.17 7.50 -2.39 -0.02 2.15 16 35 H 0.27 16.41 8.31 -92.71 -0.77 15.64 16 36 H 0.11 2.99 7.55 -2.39 -0.02 2.97 16 37 H 0.10 2.01 6.83 -2.38 -0.02 2.00 16 38 H 0.08 1.66 8.01 -2.39 -0.02 1.64 16 39 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.04 1.42 6.70 -2.39 -0.02 1.40 16 42 H 0.13 1.48 8.10 -2.38 -0.02 1.46 16 43 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 44 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 45 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 46 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 47 H 0.43 6.26 8.96 -92.71 -0.83 5.43 16 48 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 49 H 0.04 1.49 6.73 -2.39 -0.02 1.47 16 50 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 51 H 0.05 1.93 6.06 -2.39 -0.01 1.92 16 Total: -1.00 -100.04 394.76 -1.72 -101.76 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 0.04 Total: 18.23 kcal Atomic # 6 Polarization: 21.63 SS G_CDS: 7.47 Total: 29.10 kcal Atomic # 7 Polarization: -129.28 SS G_CDS: -11.01 Total: -140.28 kcal Atomic # 8 Polarization: -57.20 SS G_CDS: -0.10 Total: -57.30 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 1.88 Total: 48.51 kcal Total: -100.04 -1.72 -101.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053285845.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.825 kcal (2) G-P(sol) polarization free energy of solvation -100.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds