Wall clock time and date at job start Tue Mar 31 2020 22:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42905 * 109.47190 * 2 1 4 4 C 1.42894 * 114.00229 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47232 * 30.00094 * 4 3 2 6 6 C 1.52999 * 109.47331 * 269.99796 * 4 3 2 7 7 C 1.50705 * 109.47018 * 150.00252 * 4 3 2 8 8 N 1.29944 * 126.29045 * 44.97586 * 7 4 3 9 9 O 1.21298 * 110.25166 * 179.72565 * 8 7 4 10 10 C 1.33643 * 109.81245 * 0.47089 * 9 8 7 11 11 C 1.50701 * 126.55245 * 179.80355 * 10 9 8 12 12 N 1.46896 * 109.47034 * 269.68200 * 11 10 9 13 13 C 1.46948 * 111.00183 * 190.00084 * 12 11 10 14 14 C 1.53049 * 109.36764 * 183.19149 * 13 12 11 15 15 N 1.46961 * 109.36177 * 301.59566 * 14 13 12 16 16 C 1.46896 * 111.00124 * 183.18463 * 15 14 13 17 17 C 1.52996 * 109.47256 * 170.00033 * 16 15 14 18 18 C 1.50702 * 109.47159 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99942 * 179.72211 * 18 17 16 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 17 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 17 23 23 H 1.48504 * 109.47196 * 60.00645 * 22 20 18 24 24 H 1.48504 * 109.46887 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47679 * 300.00280 * 22 20 18 26 26 C 1.46956 * 110.87704 * 59.32220 * 15 14 13 27 27 C 1.46963 * 111.00029 * 313.80264 * 12 11 10 28 28 N 1.31134 * 106.89594 * 359.53332 * 10 9 8 29 29 H 1.09010 * 109.46971 * 299.99555 * 1 2 3 30 30 H 1.08998 * 109.47923 * 59.99812 * 1 2 3 31 31 H 1.09000 * 109.47123 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47328 * 240.00489 * 2 1 3 33 33 H 1.08998 * 109.47923 * 120.00188 * 2 1 3 34 34 H 1.09000 * 109.47664 * 179.97438 * 6 4 3 35 35 H 1.08999 * 109.47205 * 300.00314 * 6 4 3 36 36 H 1.09006 * 109.46764 * 60.00115 * 6 4 3 37 37 H 1.09004 * 109.47047 * 149.68105 * 11 10 9 38 38 H 1.09003 * 109.47035 * 29.68299 * 11 10 9 39 39 H 1.08999 * 109.48998 * 63.22220 * 13 12 11 40 40 H 1.09000 * 109.50650 * 303.16557 * 13 12 11 41 41 H 1.09001 * 109.49268 * 181.63226 * 14 13 12 42 42 H 1.09000 * 109.49067 * 61.56179 * 14 13 12 43 43 H 1.09004 * 109.46774 * 50.00232 * 16 15 14 44 44 H 1.09000 * 109.47723 * 290.00621 * 16 15 14 45 45 H 1.09004 * 109.47066 * 60.00378 * 17 16 15 46 46 H 1.08994 * 109.47405 * 300.00209 * 17 16 15 47 47 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 48 48 H 1.08999 * 109.49195 * 60.64478 * 26 15 14 49 49 H 1.09002 * 109.48564 * 180.71036 * 26 15 14 50 50 H 1.09000 * 109.48524 * 296.77653 * 27 12 11 51 51 H 1.09001 * 109.48867 * 56.84120 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8631 0.6018 -0.5147 6 6 3.9398 1.5003 1.4417 7 6 3.8340 2.7267 -0.7109 8 7 3.2975 3.8999 -0.5554 9 8 3.8505 4.7121 -1.2667 10 6 4.8151 4.1139 -1.9723 11 6 5.7320 4.7682 -2.9734 12 7 5.1255 4.7012 -4.3097 13 6 6.0846 5.1119 -5.3445 14 6 5.3924 5.1048 -6.7096 15 7 4.8702 3.7588 -6.9840 16 6 4.2637 3.6918 -8.3202 17 6 3.9588 2.2337 -8.6694 18 6 3.3371 2.1650 -10.0405 19 1 3.1760 3.0706 -10.6065 20 6 2.9797 0.9452 -10.5751 21 7 3.1763 -0.1576 -9.8861 22 14 2.2162 0.8593 -12.2777 23 1 3.1622 1.4240 -13.2735 24 1 1.9247 -0.5563 -12.6185 25 1 0.9543 1.6420 -12.2944 26 6 3.9111 3.3481 -5.9492 27 6 4.6032 3.3552 -4.5841 28 7 4.8151 2.8500 -1.6227 29 1 -0.3633 0.5138 0.8901 30 1 -0.3635 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 5.0265 1.5859 1.4413 35 1 3.5075 2.3587 1.9558 36 1 3.6481 0.5843 1.9555 37 1 6.6900 4.2483 -2.9827 38 1 5.8872 5.8110 -2.6967 39 1 6.9240 4.4168 -5.3588 40 1 6.4477 6.1162 -5.1263 41 1 6.1096 5.3811 -7.4825 42 1 4.5698 5.8198 -6.7039 43 1 4.9558 4.1042 -9.0545 44 1 3.3388 4.2685 -8.3289 45 1 3.2667 1.8214 -7.9352 46 1 4.8836 1.6570 -8.6609 47 1 2.9245 -1.0157 -10.2620 48 1 3.0716 4.0432 -5.9348 49 1 3.5483 2.3437 -6.1677 50 1 5.4259 2.6401 -4.5898 51 1 3.8860 3.0788 -3.8112 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075916029.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:31 Heat of formation + Delta-G solvation = 35.645562 kcal Electronic energy + Delta-G solvation = -29768.900733 eV Core-core repulsion = 25707.088411 eV Total energy + Delta-G solvation = -4061.812321 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.80797 -39.26612 -38.88268 -36.37238 -35.73957 -33.58938 -32.88103 -31.88359 -30.77411 -30.39098 -30.06971 -27.94144 -25.41642 -25.24402 -23.63712 -23.59577 -23.14678 -22.90993 -21.05138 -20.34696 -19.48218 -18.38120 -17.73241 -17.16172 -16.58041 -16.03351 -15.85968 -15.73233 -15.51652 -15.06345 -14.71458 -14.53577 -14.07539 -13.96858 -13.85611 -13.62590 -13.37060 -13.07432 -13.05220 -12.65981 -12.41098 -12.32830 -12.16764 -12.09657 -11.98503 -11.81480 -11.52210 -11.41609 -11.27911 -11.17628 -11.09444 -10.94083 -10.85988 -10.59416 -10.51196 -10.24595 -10.01363 -9.82589 -9.35207 -9.12920 -8.56269 -8.32271 -7.74579 -5.99001 -4.01418 0.92498 1.89162 2.56764 2.86555 3.33885 3.38193 3.40528 3.61650 3.70779 3.92068 4.35306 4.43627 4.53481 4.58824 4.73517 4.76891 4.86949 4.90166 5.00969 5.04606 5.07829 5.15880 5.22829 5.26631 5.36510 5.40728 5.44798 5.46479 5.48674 5.59843 5.61924 5.67810 5.70693 5.77277 5.85078 5.86355 6.06219 6.15112 6.27161 6.37881 6.48945 6.71552 6.75072 6.84349 6.96774 7.47985 7.55072 7.79001 7.89386 7.97873 8.08172 8.43779 9.05550 9.62095 11.12332 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.009865 B = 0.002603 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2837.666464 B =10753.684131 C =13111.007190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.374 6.374 4 C 0.181 3.819 5 H 0.094 0.906 6 C -0.167 4.167 7 C 0.166 3.834 8 N -0.357 5.357 9 O 0.091 5.909 10 C 0.191 3.809 11 C 0.145 3.855 12 N -0.535 5.535 13 C 0.062 3.938 14 C 0.055 3.945 15 N -0.540 5.540 16 C 0.064 3.936 17 C 0.029 3.971 18 C -0.523 4.523 19 H 0.053 0.947 20 C 0.058 3.942 21 N -0.893 5.893 22 Si 0.892 3.108 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 C 0.059 3.941 27 C 0.058 3.942 28 N -0.470 5.470 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.114 0.886 39 H 0.049 0.951 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.037 0.963 43 H 0.062 0.938 44 H 0.021 0.979 45 H 0.016 0.984 46 H 0.024 0.976 47 H 0.261 0.739 48 H 0.035 0.965 49 H 0.091 0.909 50 H 0.052 0.948 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.401 6.401 23.044 24.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.292 6.292 4 C 0.122 3.878 5 H 0.112 0.888 6 C -0.226 4.226 7 C -0.107 4.107 8 N -0.062 5.062 9 O 0.029 5.971 10 C -0.029 4.029 11 C 0.016 3.984 12 N -0.262 5.262 13 C -0.066 4.066 14 C -0.073 4.073 15 N -0.265 5.265 16 C -0.063 4.063 17 C -0.009 4.009 18 C -0.561 4.561 19 H 0.072 0.928 20 C -0.143 4.143 21 N -0.532 5.532 22 Si 0.720 3.280 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.203 1.203 26 C -0.069 4.069 27 C -0.070 4.070 28 N -0.205 5.205 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.132 0.868 39 H 0.067 0.933 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.056 0.944 43 H 0.080 0.920 44 H 0.039 0.961 45 H 0.034 0.966 46 H 0.042 0.958 47 H 0.070 0.930 48 H 0.053 0.947 49 H 0.110 0.890 50 H 0.071 0.929 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.700 6.065 23.600 24.647 hybrid contribution -0.294 -0.280 -1.071 1.145 sum 3.406 5.785 22.530 23.509 Atomic orbital electron populations 1.21742 0.93227 1.02507 1.03378 1.22624 0.96044 0.82847 1.00531 1.88000 1.18801 1.27399 1.95008 1.19942 0.82816 0.90399 0.94667 0.88787 1.22249 1.01857 1.03703 0.94750 1.25460 0.92757 0.95584 0.96909 1.74670 1.17343 1.01072 1.13117 1.85352 1.36577 1.35457 1.39711 1.28554 0.91440 0.87438 0.95509 1.20629 0.91756 1.01093 0.84942 1.62441 1.36109 1.27709 0.99949 1.22208 0.93300 1.00459 0.90623 1.22118 0.98913 0.91058 0.95244 1.62282 1.37121 1.23567 1.03560 1.22322 0.95849 1.01499 0.86602 1.19082 0.96999 0.89004 0.95783 1.21157 1.40639 0.92656 1.01691 0.92838 1.24992 0.95914 0.95783 0.97606 1.69964 1.47873 0.97838 1.37568 0.86658 0.79751 0.76913 0.84661 1.20219 1.21288 1.20295 1.22139 0.93276 1.02081 0.89429 1.22296 0.99230 0.87963 0.97501 1.71915 1.20363 1.15602 1.12646 0.91815 0.91580 0.90749 0.92679 0.92955 0.90964 0.91162 0.90836 0.89790 0.86839 0.93265 0.90080 0.90227 0.94429 0.91993 0.96086 0.96596 0.95768 0.92956 0.94663 0.89050 0.92941 0.91387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.28 37.15 0.38 -0.83 16 2 C 0.06 0.49 6.47 37.15 0.24 0.73 16 3 O -0.37 -4.44 9.97 -35.23 -0.35 -4.79 16 4 C 0.18 1.95 3.27 -27.88 -0.09 1.86 16 5 H 0.09 0.90 7.79 -51.93 -0.40 0.50 16 6 C -0.17 -1.37 9.51 37.16 0.35 -1.02 16 7 C 0.17 2.18 7.10 -156.37 -1.11 1.07 16 8 N -0.36 -5.04 12.16 30.90 0.38 -4.66 16 9 O 0.09 1.17 11.31 18.10 0.20 1.38 16 10 C 0.19 2.24 6.29 -13.05 -0.08 2.16 16 11 C 0.14 1.33 5.91 -4.98 -0.03 1.30 16 12 N -0.53 -6.46 4.85 -235.91 -1.14 -7.60 16 13 C 0.06 0.69 5.58 -3.77 -0.02 0.67 16 14 C 0.06 0.78 5.61 -3.77 -0.02 0.76 16 15 N -0.54 -9.75 4.71 -234.47 -1.10 -10.86 16 16 C 0.06 1.35 4.90 -3.83 -0.02 1.33 16 17 C 0.03 0.75 4.91 -27.88 -0.14 0.61 16 18 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 19 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 21 N -0.89 -26.98 13.29 55.43 0.74 -26.24 16 22 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C 0.06 1.04 5.41 -3.77 -0.02 1.02 16 27 C 0.06 0.86 5.05 -3.76 -0.02 0.84 16 28 N -0.47 -6.13 10.71 -9.87 -0.11 -6.23 16 29 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.47 8.08 -51.93 -0.42 0.05 16 33 H 0.05 0.35 7.87 -51.93 -0.41 -0.05 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.47 7.87 -51.93 -0.41 0.06 16 37 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 38 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 1.04 8.07 -51.93 -0.42 0.62 16 42 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 1.27 8.03 -51.93 -0.42 0.86 16 44 H 0.02 0.45 8.12 -51.93 -0.42 0.02 16 45 H 0.02 0.44 6.49 -51.93 -0.34 0.10 16 46 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 48 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.09 1.81 6.34 -51.93 -0.33 1.48 16 50 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 51 H 0.07 1.06 6.16 -51.93 -0.32 0.74 16 LS Contribution 409.36 15.07 6.17 6.17 Total: -1.00 -32.92 409.36 -10.15 -43.07 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -8.92 Total: -3.87 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -0.99 Total: -3.08 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: -1.24 Total: -55.59 kcal Atomic # 8 Polarization: -3.27 SS G_CDS: -0.15 Total: -3.42 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.92 -10.15 -43.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075916029.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.716 kcal (2) G-P(sol) polarization free energy of solvation -32.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds