Wall clock time and date at job start Tue Mar 31 2020 22:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42905 * 109.47190 * 2 1 4 4 C 1.42894 * 114.00229 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47232 * 30.00094 * 4 3 2 6 6 C 1.52999 * 109.47331 * 269.99796 * 4 3 2 7 7 C 1.50705 * 109.47018 * 150.00252 * 4 3 2 8 8 N 1.29944 * 126.29045 * 44.97586 * 7 4 3 9 9 O 1.21298 * 110.25166 * 179.72565 * 8 7 4 10 10 C 1.33643 * 109.81245 * 0.47089 * 9 8 7 11 11 C 1.50701 * 126.55245 * 179.80355 * 10 9 8 12 12 N 1.46896 * 109.47034 * 269.68200 * 11 10 9 13 13 C 1.46948 * 111.00183 * 190.00084 * 12 11 10 14 14 C 1.53049 * 109.36764 * 183.19149 * 13 12 11 15 15 N 1.46961 * 109.36177 * 301.59566 * 14 13 12 16 16 C 1.46896 * 111.00124 * 183.18463 * 15 14 13 17 17 C 1.52996 * 109.47256 * 170.00033 * 16 15 14 18 18 C 1.50702 * 109.47159 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99942 * 179.72211 * 18 17 16 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 17 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 17 23 23 H 1.48504 * 109.47196 * 60.00645 * 22 20 18 24 24 H 1.48504 * 109.46887 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47679 * 300.00280 * 22 20 18 26 26 C 1.46956 * 110.87704 * 59.32220 * 15 14 13 27 27 C 1.46963 * 111.00029 * 313.80264 * 12 11 10 28 28 N 1.31134 * 106.89594 * 359.53332 * 10 9 8 29 29 H 1.09010 * 109.46971 * 299.99555 * 1 2 3 30 30 H 1.08998 * 109.47923 * 59.99812 * 1 2 3 31 31 H 1.09000 * 109.47123 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47328 * 240.00489 * 2 1 3 33 33 H 1.08998 * 109.47923 * 120.00188 * 2 1 3 34 34 H 1.09000 * 109.47664 * 179.97438 * 6 4 3 35 35 H 1.08999 * 109.47205 * 300.00314 * 6 4 3 36 36 H 1.09006 * 109.46764 * 60.00115 * 6 4 3 37 37 H 1.09004 * 109.47047 * 149.68105 * 11 10 9 38 38 H 1.09003 * 109.47035 * 29.68299 * 11 10 9 39 39 H 1.08999 * 109.48998 * 63.22220 * 13 12 11 40 40 H 1.09000 * 109.50650 * 303.16557 * 13 12 11 41 41 H 1.09001 * 109.49268 * 181.63226 * 14 13 12 42 42 H 1.09000 * 109.49067 * 61.56179 * 14 13 12 43 43 H 1.09004 * 109.46774 * 50.00232 * 16 15 14 44 44 H 1.09000 * 109.47723 * 290.00621 * 16 15 14 45 45 H 1.09004 * 109.47066 * 60.00378 * 17 16 15 46 46 H 1.08994 * 109.47405 * 300.00209 * 17 16 15 47 47 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 48 48 H 1.08999 * 109.49195 * 60.64478 * 26 15 14 49 49 H 1.09002 * 109.48564 * 180.71036 * 26 15 14 50 50 H 1.09000 * 109.48524 * 296.77653 * 27 12 11 51 51 H 1.09001 * 109.48867 * 56.84120 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8631 0.6018 -0.5147 6 6 3.9398 1.5003 1.4417 7 6 3.8340 2.7267 -0.7109 8 7 3.2975 3.8999 -0.5554 9 8 3.8505 4.7121 -1.2667 10 6 4.8151 4.1139 -1.9723 11 6 5.7320 4.7682 -2.9734 12 7 5.1255 4.7012 -4.3097 13 6 6.0846 5.1119 -5.3445 14 6 5.3924 5.1048 -6.7096 15 7 4.8702 3.7588 -6.9840 16 6 4.2637 3.6918 -8.3202 17 6 3.9588 2.2337 -8.6694 18 6 3.3371 2.1650 -10.0405 19 1 3.1760 3.0706 -10.6065 20 6 2.9797 0.9452 -10.5751 21 7 3.1763 -0.1576 -9.8861 22 14 2.2162 0.8593 -12.2777 23 1 3.1622 1.4240 -13.2735 24 1 1.9247 -0.5563 -12.6185 25 1 0.9543 1.6420 -12.2944 26 6 3.9111 3.3481 -5.9492 27 6 4.6032 3.3552 -4.5841 28 7 4.8151 2.8500 -1.6227 29 1 -0.3633 0.5138 0.8901 30 1 -0.3635 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 5.0265 1.5859 1.4413 35 1 3.5075 2.3587 1.9558 36 1 3.6481 0.5843 1.9555 37 1 6.6900 4.2483 -2.9827 38 1 5.8872 5.8110 -2.6967 39 1 6.9240 4.4168 -5.3588 40 1 6.4477 6.1162 -5.1263 41 1 6.1096 5.3811 -7.4825 42 1 4.5698 5.8198 -6.7039 43 1 4.9558 4.1042 -9.0545 44 1 3.3388 4.2685 -8.3289 45 1 3.2667 1.8214 -7.9352 46 1 4.8836 1.6570 -8.6609 47 1 2.9245 -1.0157 -10.2620 48 1 3.0716 4.0432 -5.9348 49 1 3.5483 2.3437 -6.1677 50 1 5.4259 2.6401 -4.5898 51 1 3.8860 3.0788 -3.8112 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075916029.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:30 Heat of formation + Delta-G solvation = 10.341463 kcal Electronic energy + Delta-G solvation = -29769.998001 eV Core-core repulsion = 25707.088411 eV Total energy + Delta-G solvation = -4062.909590 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -46.78009 -40.43934 -39.68164 -37.56098 -36.81331 -35.21507 -34.23055 -32.81396 -31.97125 -31.75896 -31.07283 -29.26070 -26.77356 -26.26292 -25.13554 -24.82289 -24.05316 -23.75568 -22.14334 -21.89794 -20.73653 -19.37790 -18.68097 -18.60710 -17.95635 -17.14746 -16.78488 -16.61739 -16.56294 -16.43913 -16.14362 -15.94351 -15.48642 -15.30026 -14.76567 -14.56754 -14.38306 -14.30026 -14.08831 -13.84226 -13.70850 -13.36866 -13.15346 -13.04448 -12.95770 -12.90028 -12.81038 -12.74736 -12.51310 -12.36563 -12.31460 -12.23596 -12.15367 -12.00756 -11.97286 -11.73185 -11.31471 -11.23614 -11.11880 -10.78549 -10.54245 -9.53987 -9.20999 -8.20628 -6.32199 -0.00866 0.94487 1.39449 1.42889 1.50708 1.70227 2.06149 2.39656 2.75606 2.80405 3.02069 3.04662 3.12685 3.63472 3.80651 3.86459 3.95398 4.06400 4.10745 4.16191 4.19421 4.23755 4.31606 4.39190 4.40629 4.45486 4.47646 4.51440 4.57800 4.61887 4.66948 4.68797 4.79201 4.81574 4.86692 4.90206 4.93620 4.97163 5.04584 5.07002 5.11163 5.19339 5.43809 5.63375 5.70188 5.76628 5.85383 6.01196 6.08178 6.29293 6.30697 6.84880 7.03773 7.36906 8.91368 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.009865 B = 0.002603 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2837.666464 B =10753.684131 C =13111.007190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.400 6.400 4 C 0.175 3.825 5 H 0.101 0.899 6 C -0.158 4.158 7 C 0.159 3.841 8 N -0.382 5.382 9 O 0.086 5.914 10 C 0.195 3.805 11 C 0.147 3.853 12 N -0.540 5.540 13 C 0.067 3.933 14 C 0.051 3.949 15 N -0.550 5.550 16 C 0.080 3.920 17 C 0.037 3.963 18 C -0.545 4.545 19 H 0.061 0.939 20 C 0.001 3.999 21 N -0.932 5.932 22 Si 0.967 3.033 23 H -0.264 1.264 24 H -0.283 1.283 25 H -0.268 1.268 26 C 0.064 3.936 27 C 0.076 3.924 28 N -0.488 5.488 29 H 0.064 0.936 30 H 0.046 0.954 31 H 0.095 0.905 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.154 0.846 39 H 0.051 0.949 40 H 0.125 0.875 41 H 0.094 0.906 42 H 0.037 0.963 43 H 0.071 0.929 44 H 0.017 0.983 45 H -0.012 1.012 46 H -0.008 1.008 47 H 0.264 0.736 48 H 0.028 0.972 49 H 0.055 0.945 50 H 0.043 0.957 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.512 7.840 23.252 25.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 O -0.319 6.319 4 C 0.116 3.884 5 H 0.119 0.881 6 C -0.216 4.216 7 C -0.115 4.115 8 N -0.088 5.088 9 O 0.026 5.974 10 C -0.025 4.025 11 C 0.019 3.981 12 N -0.268 5.268 13 C -0.060 4.060 14 C -0.077 4.077 15 N -0.275 5.275 16 C -0.047 4.047 17 C 0.000 4.000 18 C -0.584 4.584 19 H 0.079 0.921 20 C -0.197 4.197 21 N -0.572 5.572 22 Si 0.791 3.209 23 H -0.189 1.189 24 H -0.208 1.208 25 H -0.193 1.193 26 C -0.065 4.065 27 C -0.052 4.052 28 N -0.223 5.223 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.113 0.887 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.113 0.887 37 H 0.121 0.879 38 H 0.172 0.828 39 H 0.070 0.930 40 H 0.143 0.857 41 H 0.112 0.888 42 H 0.055 0.945 43 H 0.089 0.911 44 H 0.035 0.965 45 H 0.006 0.994 46 H 0.011 0.989 47 H 0.072 0.928 48 H 0.046 0.954 49 H 0.073 0.927 50 H 0.061 0.939 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.830 7.535 23.817 25.443 hybrid contribution -0.628 -0.734 -1.112 1.473 sum 4.203 6.800 22.705 24.071 Atomic orbital electron populations 1.21772 0.92918 1.03603 1.02465 1.22827 0.96369 0.81856 1.01606 1.87967 1.19484 1.29205 1.95224 1.20203 0.82561 0.89650 0.96016 0.88102 1.22196 1.02128 1.04277 0.93023 1.25974 0.92523 0.96175 0.96779 1.74648 1.18288 1.01662 1.14224 1.85315 1.36850 1.35363 1.39867 1.29118 0.90962 0.87204 0.95240 1.20957 0.91207 1.03564 0.82392 1.62410 1.37386 1.25272 1.01720 1.22273 0.92358 1.02932 0.88404 1.22307 0.99247 0.88286 0.97845 1.62204 1.36498 1.26773 1.02010 1.21956 0.96157 0.97717 0.88862 1.18901 0.94561 0.91895 0.94643 1.21610 1.40865 0.93209 1.02706 0.92054 1.25984 0.96288 0.95302 1.02170 1.70112 1.48896 0.98511 1.39693 0.85482 0.79107 0.77162 0.79175 1.18875 1.20843 1.19289 1.21996 0.93555 0.99774 0.91174 1.21951 0.98454 0.89794 0.95044 1.71929 1.20886 1.16454 1.13069 0.91701 0.93464 0.88653 0.92906 0.90494 0.90180 0.92290 0.88703 0.87934 0.82834 0.93046 0.85708 0.88762 0.94471 0.91060 0.96481 0.99358 0.98925 0.92778 0.95425 0.92686 0.93855 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 10.28 71.98 0.74 -1.67 16 2 C 0.05 0.85 6.47 71.98 0.47 1.31 16 3 O -0.40 -9.62 9.97 -148.98 -1.49 -11.11 16 4 C 0.18 3.75 3.27 29.85 0.10 3.85 16 5 H 0.10 1.94 7.79 -2.39 -0.02 1.92 16 6 C -0.16 -2.45 9.51 71.98 0.68 -1.77 16 7 C 0.16 4.19 7.10 138.46 0.98 5.17 16 8 N -0.38 -10.85 12.16 -60.32 -0.73 -11.58 16 9 O 0.09 2.18 11.31 74.83 0.85 3.03 16 10 C 0.20 4.34 6.29 88.38 0.56 4.90 16 11 C 0.15 2.24 5.91 85.56 0.51 2.75 16 12 N -0.54 -11.81 4.85 -900.29 -4.37 -16.18 16 13 C 0.07 1.27 5.58 86.31 0.48 1.75 16 14 C 0.05 1.33 5.61 86.31 0.48 1.81 16 15 N -0.55 -19.95 4.71 -895.72 -4.22 -24.17 16 16 C 0.08 3.46 4.90 86.30 0.42 3.88 16 17 C 0.04 2.04 4.91 29.85 0.15 2.19 16 18 C -0.55 -31.63 9.11 25.60 0.23 -31.39 16 19 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 20 C 0.00 0.03 5.46 84.66 0.46 0.49 16 21 N -0.93 -57.86 13.29 21.45 0.28 -57.58 16 22 Si 0.97 44.75 29.54 68.60 2.03 46.77 16 23 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 24 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 25 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 26 C 0.06 2.33 5.41 86.31 0.47 2.80 16 27 C 0.08 2.26 5.05 86.31 0.44 2.69 16 28 N -0.49 -12.56 10.71 -303.19 -3.25 -15.81 16 29 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.05 0.91 8.08 -2.39 -0.02 0.89 16 33 H 0.08 0.93 7.87 -2.39 -0.02 0.91 16 34 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.09 1.03 7.87 -2.38 -0.02 1.02 16 37 H 0.10 1.28 8.08 -2.38 -0.02 1.26 16 38 H 0.15 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.09 2.20 8.07 -2.39 -0.02 2.18 16 42 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.07 2.91 8.03 -2.38 -0.02 2.89 16 44 H 0.02 0.74 8.12 -2.39 -0.02 0.72 16 45 H -0.01 -0.71 6.49 -2.38 -0.02 -0.72 16 46 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 47 H 0.26 15.36 8.31 -92.70 -0.77 14.59 16 48 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 49 H 0.05 2.37 6.34 -2.39 -0.02 2.36 16 50 H 0.04 1.35 8.14 -2.39 -0.02 1.34 16 51 H 0.06 1.81 6.16 -2.39 -0.01 1.80 16 Total: -1.00 -74.72 409.36 -2.83 -77.55 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 0.90 Total: 10.31 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: 7.17 Total: -1.23 kcal Atomic # 7 Polarization: -113.04 SS G_CDS: -12.28 Total: -125.32 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: -0.64 Total: -8.08 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -74.72 -2.83 -77.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075916029.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.893 kcal (2) G-P(sol) polarization free energy of solvation -74.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds