Wall clock time and date at job start Tue Mar 31 2020 21:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47140 * 2 1 4 4 C 1.50699 * 109.47075 * 120.00165 * 2 1 3 5 5 O 1.21280 * 119.99898 * 91.55091 * 4 2 1 6 6 N 1.34776 * 120.00104 * 271.55490 * 4 2 1 7 7 C 1.47023 * 125.64487 * 354.62951 * 6 4 2 8 8 C 1.54325 * 107.26995 * 180.97276 * 7 6 4 9 9 C 1.55148 * 102.86285 * 22.52520 * 8 7 6 10 10 C 1.47421 * 125.64558 * 174.94194 * 6 4 2 11 11 N 1.46901 * 109.46696 * 240.00340 * 2 1 3 12 12 C 1.46953 * 111.00184 * 60.05581 * 11 2 1 13 13 C 1.53054 * 109.36271 * 183.18654 * 12 11 2 14 14 N 1.46959 * 109.36477 * 301.59593 * 13 12 11 15 15 C 1.46896 * 111.00219 * 183.18638 * 14 13 12 16 16 C 1.50693 * 109.47432 * 170.00088 * 15 14 13 17 17 O 1.21293 * 119.99919 * 0.02562 * 16 15 14 18 18 N 1.34775 * 120.00423 * 180.02562 * 16 15 14 19 19 C 1.37099 * 120.00183 * 180.02562 * 18 16 15 20 20 H 1.07995 * 119.99751 * 359.97438 * 19 18 16 21 21 C 1.38953 * 119.99657 * 180.02562 * 19 18 16 22 22 N 1.31411 * 120.00086 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99841 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46715 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47059 * 119.99200 * 23 21 19 26 26 H 1.48497 * 109.46932 * 239.99513 * 23 21 19 27 27 C 1.46967 * 110.87706 * 59.32292 * 14 13 12 28 28 C 1.46960 * 110.99737 * 183.85666 * 11 2 1 29 29 H 1.08999 * 109.47347 * 173.80532 * 1 2 3 30 30 H 1.09004 * 109.47245 * 293.80966 * 1 2 3 31 31 H 1.09003 * 109.47168 * 53.80792 * 1 2 3 32 32 H 1.08996 * 109.88473 * 300.51216 * 7 6 4 33 33 H 1.08996 * 109.88580 * 61.68448 * 7 6 4 34 34 H 1.08999 * 110.91819 * 264.10742 * 8 7 6 35 35 H 1.09000 * 110.58885 * 140.78739 * 8 7 6 36 36 H 1.09010 * 111.00247 * 206.22901 * 9 8 7 37 37 H 1.08995 * 111.00808 * 82.38191 * 9 8 7 38 38 H 1.08994 * 110.36570 * 274.66747 * 10 6 4 39 39 H 1.09001 * 110.37207 * 36.88468 * 10 6 4 40 40 H 1.09003 * 109.48809 * 63.22000 * 12 11 2 41 41 H 1.08998 * 109.49331 * 303.15454 * 12 11 2 42 42 H 1.09001 * 109.48811 * 181.63800 * 13 12 11 43 43 H 1.08989 * 109.49199 * 61.56676 * 13 12 11 44 44 H 1.09000 * 109.47680 * 290.00716 * 15 14 13 45 45 H 1.09004 * 109.46893 * 50.00370 * 15 14 13 46 46 H 0.97005 * 120.00069 * 0.02562 * 18 16 15 47 47 H 0.97001 * 119.99412 * 180.02562 * 22 21 19 48 48 H 1.08994 * 109.48578 * 60.64426 * 27 14 13 49 49 H 1.08998 * 109.48416 * 180.70877 * 27 14 13 50 50 H 1.09002 * 109.48923 * 296.77741 * 28 11 2 51 51 H 1.09003 * 109.48690 * 56.81695 * 28 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.2612 -1.9008 1.1923 6 7 2.2271 -0.0230 2.3732 7 6 2.0977 1.4331 2.5298 8 6 2.4366 1.7680 3.9977 9 6 3.2942 0.5531 4.4400 10 6 2.6114 -0.6059 3.6716 11 7 2.0196 -0.6924 -1.1995 12 6 1.5494 -0.0253 -2.4216 13 6 2.0133 -0.8204 -3.6443 14 7 3.4794 -0.9204 -3.6331 15 6 3.9691 -1.6129 -4.8325 16 6 5.4683 -1.4825 -4.9110 17 8 6.0698 -0.8731 -4.0519 18 7 6.1408 -2.0431 -5.9356 19 6 7.5049 -1.9249 -6.0067 20 1 8.0404 -1.3823 -5.2418 21 6 8.1981 -2.5024 -7.0634 22 7 7.5463 -3.1623 -7.9944 23 14 10.0566 -2.3408 -7.1607 24 1 10.5465 -1.5556 -5.9994 25 1 10.6726 -3.6919 -7.1406 26 1 10.4278 -1.6461 -8.4196 27 6 3.9495 -1.5876 -2.4110 28 6 3.4857 -0.7925 -1.1883 29 1 -0.3634 -1.0216 -0.1109 30 1 -0.3634 0.4149 0.9402 31 1 -0.3634 0.6068 -0.8294 32 1 2.7932 1.9411 1.8617 33 1 1.0758 1.7405 2.3079 34 1 1.5307 1.8402 4.5995 35 1 3.0147 2.6901 4.0568 36 1 3.2284 0.3999 5.5172 37 1 4.3313 0.6721 4.1266 38 1 1.7279 -0.9492 4.2097 39 1 3.3099 -1.4299 3.5257 40 1 1.9604 0.9833 -2.4663 41 1 0.4607 0.0255 -2.4124 42 1 1.6905 -0.3117 -4.5527 43 1 1.5804 -1.8202 -3.6136 44 1 3.6983 -2.6674 -4.7793 45 1 3.5187 -1.1664 -5.7191 46 1 5.6598 -2.5302 -6.6229 47 1 8.0303 -3.5657 -8.7319 48 1 3.5385 -2.5961 -2.3662 49 1 5.0383 -1.6383 -2.4203 50 1 3.9187 0.2073 -1.2190 51 1 3.8085 -1.3008 -0.2796 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088594535.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:31 Heat of formation + Delta-G solvation = -70.791615 kcal Electronic energy + Delta-G solvation = -30291.702682 eV Core-core repulsion = 26225.274898 eV Total energy + Delta-G solvation = -4066.427784 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.57144 -40.57565 -39.50297 -38.30677 -36.63708 -35.81091 -33.39941 -33.13979 -32.15557 -31.68213 -29.96922 -29.25183 -27.07248 -26.07716 -24.88660 -24.39138 -23.07441 -22.02775 -21.11232 -20.85740 -20.06289 -19.87911 -18.39313 -17.86583 -17.73593 -17.07212 -16.61895 -16.55300 -16.28532 -15.91383 -15.83037 -15.60308 -15.35806 -15.23771 -15.09314 -14.63418 -14.43092 -14.23698 -13.90618 -13.83376 -13.65461 -13.50297 -13.29187 -13.08199 -13.01262 -12.84032 -12.74363 -12.49051 -12.41706 -12.26953 -12.17964 -12.16752 -12.12272 -11.96298 -11.77877 -11.61781 -11.45561 -10.76565 -10.28860 -10.00704 -9.70740 -9.43437 -9.22564 -8.47069 -5.95608 1.35520 1.40258 1.50173 1.54778 1.86073 2.04376 2.27633 2.71740 2.80697 3.19373 3.35554 3.36381 3.65211 3.79032 3.84433 3.98032 4.01127 4.07987 4.08610 4.17791 4.28323 4.31188 4.37104 4.43808 4.45895 4.48376 4.55549 4.58519 4.62981 4.68224 4.73403 4.82215 4.84636 4.90555 4.93403 4.97172 4.98865 5.05908 5.10098 5.21986 5.24851 5.36971 5.40435 5.76585 5.84578 5.96999 6.08763 6.20024 6.44273 6.60377 7.11169 7.12594 7.55834 8.11900 8.70697 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.017348 B = 0.002274 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.590950 B =12312.012844 C =13370.835836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.071 3.929 3 H 0.074 0.926 4 C 0.526 3.474 5 O -0.570 6.570 6 N -0.624 5.624 7 C 0.088 3.912 8 C -0.122 4.122 9 C -0.128 4.128 10 C 0.096 3.904 11 N -0.531 5.531 12 C 0.062 3.938 13 C 0.054 3.946 14 N -0.531 5.531 15 C 0.058 3.942 16 C 0.441 3.559 17 O -0.615 6.615 18 N -0.575 5.575 19 C -0.330 4.330 20 H 0.078 0.922 21 C -0.015 4.015 22 N -0.921 5.921 23 Si 0.993 3.007 24 H -0.274 1.274 25 H -0.271 1.271 26 H -0.269 1.269 27 C 0.067 3.933 28 C 0.076 3.924 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.052 0.948 40 H 0.044 0.956 41 H 0.116 0.884 42 H 0.104 0.896 43 H 0.041 0.959 44 H 0.062 0.938 45 H 0.117 0.883 46 H 0.396 0.604 47 H 0.277 0.723 48 H 0.025 0.975 49 H 0.065 0.935 50 H 0.030 0.970 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.872 11.322 20.703 30.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.040 4.040 3 H 0.092 0.908 4 C 0.314 3.686 5 O -0.448 6.448 6 N -0.359 5.359 7 C -0.033 4.033 8 C -0.160 4.160 9 C -0.166 4.166 10 C -0.027 4.027 11 N -0.257 5.257 12 C -0.065 4.065 13 C -0.073 4.073 14 N -0.256 5.256 15 C -0.073 4.073 16 C 0.229 3.771 17 O -0.501 6.501 18 N -0.212 5.212 19 C -0.460 4.460 20 H 0.096 0.904 21 C -0.214 4.214 22 N -0.562 5.562 23 Si 0.817 3.183 24 H -0.199 1.199 25 H -0.196 1.196 26 H -0.194 1.194 27 C -0.061 4.061 28 C -0.052 4.052 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.111 0.889 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.124 0.876 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.134 0.866 42 H 0.122 0.878 43 H 0.060 0.940 44 H 0.079 0.921 45 H 0.135 0.865 46 H 0.230 0.770 47 H 0.087 0.913 48 H 0.043 0.957 49 H 0.083 0.917 50 H 0.048 0.952 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.316 10.966 21.013 29.955 hybrid contribution 1.186 -0.749 -0.647 1.545 sum -17.130 10.217 20.366 28.506 Atomic orbital electron populations 1.21760 0.89398 1.03447 1.04253 1.21676 0.99062 0.95803 0.87472 0.90801 1.20635 0.76877 0.86837 0.84217 1.90698 1.52275 1.17343 1.84502 1.48711 1.68412 1.09622 1.09168 1.22378 1.02831 0.78763 0.99372 1.22661 1.01309 0.98775 0.93246 1.22786 0.99084 0.93506 1.01234 1.22369 0.99539 0.97481 0.83278 1.62000 1.09438 1.52327 1.01974 1.22311 1.01587 0.95479 0.87123 1.22347 0.85439 1.00105 0.99452 1.61775 1.11011 1.52092 1.00740 1.21728 0.91666 0.98542 0.95359 1.20763 0.90441 0.82852 0.83063 1.90455 1.71057 1.46826 1.41755 1.41942 1.07231 1.48711 1.23332 1.19672 0.83254 1.33740 1.09324 0.90448 1.26053 1.04916 0.95756 0.94699 1.69683 1.38194 1.35511 1.12801 0.84868 0.76861 0.78280 0.78292 1.19885 1.19650 1.19407 1.22016 1.00148 0.94702 0.89244 1.21894 0.87733 0.98333 0.97237 0.92383 0.90041 0.88852 0.91427 0.89195 0.88677 0.88312 0.87605 0.91366 0.90546 0.92977 0.93793 0.86598 0.87774 0.94028 0.92052 0.86481 0.77018 0.91313 0.95708 0.91709 0.95157 0.91881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 8.75 71.98 0.63 -1.27 16 2 C 0.07 1.51 2.08 44.17 0.09 1.60 16 3 H 0.07 1.34 7.13 -2.39 -0.02 1.32 16 4 C 0.53 13.75 5.93 87.66 0.52 14.27 16 5 O -0.57 -20.56 15.55 -3.03 -0.05 -20.60 16 6 N -0.62 -11.99 3.33 -811.82 -2.70 -14.69 16 7 C 0.09 0.96 6.08 86.73 0.53 1.48 16 8 C -0.12 -0.77 6.95 31.78 0.22 -0.55 16 9 C -0.13 -1.25 7.08 31.98 0.23 -1.02 16 10 C 0.10 1.61 6.93 86.86 0.60 2.21 16 11 N -0.53 -14.43 4.32 -874.86 -3.78 -18.21 16 12 C 0.06 1.37 5.32 86.31 0.46 1.83 16 13 C 0.05 1.39 5.61 86.31 0.48 1.87 16 14 N -0.53 -18.88 4.45 -900.30 -4.00 -22.89 16 15 C 0.06 2.17 5.45 85.56 0.47 2.64 16 16 C 0.44 22.07 7.48 87.65 0.66 22.73 16 17 O -0.61 -35.37 13.91 -3.07 -0.04 -35.41 16 18 N -0.57 -30.64 5.29 -306.99 -1.62 -32.26 16 19 C -0.33 -19.32 9.68 84.04 0.81 -18.51 16 20 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 21 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 22 N -0.92 -50.85 13.05 21.66 0.28 -50.57 16 23 Si 0.99 44.08 29.55 68.60 2.03 46.11 16 24 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 25 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 26 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 27 C 0.07 2.62 5.26 86.31 0.45 3.07 16 28 C 0.08 2.60 5.23 86.31 0.45 3.05 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.08 0.86 8.09 -2.38 -0.02 0.84 16 31 H 0.09 0.93 6.68 -2.39 -0.02 0.91 16 32 H 0.07 0.78 7.92 -2.39 -0.02 0.76 16 33 H 0.09 0.63 8.09 -2.39 -0.02 0.61 16 34 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.11 0.60 8.14 -2.38 -0.02 0.58 16 37 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.05 1.15 7.99 -2.39 -0.02 1.13 16 40 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.12 1.77 6.28 -2.39 -0.02 1.76 16 42 H 0.10 2.18 8.07 -2.39 -0.02 2.16 16 43 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.06 2.15 8.12 -2.39 -0.02 2.13 16 45 H 0.12 3.71 8.03 -2.39 -0.02 3.69 16 46 H 0.40 20.03 7.90 -92.70 -0.73 19.30 16 47 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 48 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.06 3.05 5.85 -2.39 -0.01 3.03 16 50 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 51 H 0.06 2.36 6.03 -2.39 -0.01 2.35 16 Total: -1.00 -79.36 397.17 -2.63 -81.99 By element: Atomic # 1 Polarization: 33.27 SS G_CDS: 0.19 Total: 33.46 kcal Atomic # 6 Polarization: 26.01 SS G_CDS: 7.07 Total: 33.08 kcal Atomic # 7 Polarization: -126.79 SS G_CDS: -11.83 Total: -138.62 kcal Atomic # 8 Polarization: -55.93 SS G_CDS: -0.09 Total: -56.02 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -79.36 -2.63 -81.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088594535.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.196 kcal (2) G-P(sol) polarization free energy of solvation -79.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds