Wall clock time and date at job start Tue Mar 31 2020 21:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46490 * 109.47305 * 2 1 4 4 C 1.46497 * 120.00322 * 270.00146 * 3 2 1 5 5 C 1.50707 * 109.47162 * 269.99844 * 4 3 2 6 6 H 1.07998 * 119.99576 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99930 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99982 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47235 * 59.99855 * 9 7 5 11 11 H 1.48500 * 109.47168 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47142 * 299.99797 * 9 7 5 13 13 C 1.34780 * 120.00111 * 89.99580 * 3 2 1 14 14 O 1.21280 * 120.00423 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99795 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.46921 * 179.97438 * 15 13 3 17 17 C 1.46906 * 110.99793 * 179.97438 * 16 15 13 18 18 H 1.09003 * 109.46871 * 35.00433 * 17 16 15 19 19 C 1.52994 * 109.47113 * 275.00325 * 17 16 15 20 20 C 1.50696 * 109.46865 * 155.00158 * 17 16 15 21 21 N 1.31134 * 126.54846 * 224.99935 * 20 17 16 22 22 C 1.34504 * 105.61186 * 180.02562 * 21 20 17 23 23 C 1.50706 * 126.28419 * 179.97438 * 22 21 20 24 24 C 1.52991 * 109.47099 * 59.99780 * 23 22 21 25 25 C 1.52998 * 109.46733 * 179.97438 * 23 22 21 26 26 C 1.53004 * 109.46877 * 299.99740 * 23 22 21 27 27 N 1.29941 * 107.42736 * 359.97438 * 22 21 20 28 28 O 1.21311 * 110.24819 * 359.70778 * 27 22 21 29 29 H 1.09005 * 109.47062 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47263 * 299.99631 * 1 2 3 31 31 H 1.08996 * 109.47107 * 60.00334 * 1 2 3 32 32 H 1.09006 * 109.47320 * 239.99881 * 2 1 3 33 33 H 1.09002 * 109.47139 * 120.00107 * 2 1 3 34 34 H 1.09000 * 109.47018 * 29.99405 * 4 3 2 35 35 H 1.09000 * 109.47828 * 149.99700 * 4 3 2 36 36 H 0.97001 * 119.99961 * 180.02562 * 8 7 5 37 37 H 1.09002 * 109.47060 * 299.99722 * 15 13 3 38 38 H 1.09001 * 109.47380 * 59.99809 * 15 13 3 39 39 H 1.00898 * 110.99877 * 56.04636 * 16 15 13 40 40 H 1.09003 * 109.47340 * 299.99821 * 19 17 16 41 41 H 1.08995 * 109.47731 * 59.99955 * 19 17 16 42 42 H 1.08996 * 109.47268 * 180.02562 * 19 17 16 43 43 H 1.09001 * 109.47268 * 60.00031 * 24 23 22 44 44 H 1.09002 * 109.47486 * 179.97438 * 24 23 22 45 45 H 1.09008 * 109.47455 * 299.99704 * 24 23 22 46 46 H 1.09002 * 109.47457 * 59.99620 * 25 23 22 47 47 H 1.08993 * 109.47027 * 179.97438 * 25 23 22 48 48 H 1.09001 * 109.47150 * 299.99672 * 25 23 22 49 49 H 1.09000 * 109.47194 * 60.00179 * 26 23 22 50 50 H 1.08998 * 109.46335 * 180.02562 * 26 23 22 51 51 H 1.09002 * 109.46920 * 300.00139 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 3.3489 3.1249 -3.6185 9 14 5.9132 2.0955 -3.4175 10 1 6.1403 0.6387 -3.5947 11 1 6.1604 2.7947 -4.7040 12 1 6.8411 2.6188 -2.3829 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9922 1.3059 2.4723 16 7 2.3108 2.2058 3.5889 17 6 2.0772 1.5456 4.8802 18 1 2.3283 0.4880 4.7982 19 6 0.6047 1.6916 5.2687 20 6 2.9411 2.1865 5.9356 21 7 3.6563 1.5655 6.8424 22 6 4.2540 2.5347 7.5583 23 6 5.1869 2.3354 8.7250 24 6 6.4064 1.5306 8.2711 25 6 5.6427 3.6975 9.2519 26 6 4.4591 1.5756 9.8359 27 7 3.8793 3.6744 7.0593 28 8 3.1296 3.4963 6.1223 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.5818 1.6876 -2.0283 35 1 2.0956 3.1410 -1.1384 36 1 3.6747 3.5148 -4.4447 37 1 0.9443 1.0114 2.5302 38 1 2.6227 0.4186 2.5299 39 1 1.7858 3.0648 3.5221 40 1 0.3536 2.7492 5.3507 41 1 -0.0202 1.2281 4.5054 42 1 0.4314 1.2021 6.2270 43 1 6.9248 2.0718 7.4796 44 1 7.0814 1.3868 9.1148 45 1 6.0820 0.5601 7.8954 46 1 4.7741 4.2713 9.5751 47 1 6.3171 3.5534 10.0960 48 1 6.1613 4.2383 8.4603 49 1 4.1348 0.6052 9.4602 50 1 5.1338 1.4319 10.6798 51 1 3.5903 2.1490 10.1592 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185210391.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:41 Heat of formation + Delta-G solvation = -2.309454 kcal Electronic energy + Delta-G solvation = -29778.513900 eV Core-core repulsion = 25715.055725 eV Total energy + Delta-G solvation = -4063.458174 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -46.59769 -40.76171 -38.71276 -38.22101 -36.86421 -35.79489 -34.89977 -33.26746 -31.65223 -31.20687 -29.31471 -28.35472 -28.26979 -27.18795 -25.56399 -25.42100 -24.54485 -23.77887 -22.81861 -20.47080 -19.95962 -19.09807 -18.66555 -18.40143 -17.77818 -17.57840 -16.70558 -16.52338 -16.24866 -15.86689 -15.58285 -15.42110 -15.20680 -14.92486 -14.62847 -14.40971 -14.24418 -13.91556 -13.60585 -13.55945 -13.48111 -13.38057 -13.20026 -13.13120 -13.09141 -12.83097 -12.71725 -12.64704 -12.61456 -12.50304 -12.48716 -12.46165 -12.23293 -12.13193 -11.93695 -11.81403 -11.77687 -11.71457 -10.96758 -10.63467 -10.57027 -9.62194 -9.37153 -8.21532 -6.35821 0.13931 1.18906 1.35569 1.40111 1.47009 1.85548 1.88935 2.17502 2.37994 2.54343 2.91188 3.07888 3.28030 3.66310 3.69750 3.85637 3.90982 3.95228 4.07069 4.15302 4.21396 4.30044 4.47454 4.50662 4.57881 4.64314 4.66549 4.68868 4.70809 4.76692 4.79493 4.85222 4.88089 4.88921 4.98308 5.01658 5.05103 5.10680 5.16689 5.19089 5.24879 5.26969 5.30818 5.45408 5.59674 5.69108 5.90871 6.08667 6.12859 6.72534 6.86721 7.16065 7.30442 7.55535 8.84989 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013123 B = 0.002444 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.176785 B =11452.184173 C =12743.121811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.098 3.902 3 N -0.604 5.604 4 C 0.264 3.736 5 C -0.541 4.541 6 H 0.052 0.948 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.964 3.036 10 H -0.259 1.259 11 H -0.279 1.279 12 H -0.281 1.281 13 C 0.492 3.508 14 O -0.589 6.589 15 C 0.061 3.939 16 N -0.691 5.691 17 C 0.184 3.816 18 H 0.145 0.855 19 C -0.177 4.177 20 C 0.203 3.797 21 N -0.490 5.490 22 C 0.174 3.826 23 C 0.018 3.982 24 C -0.134 4.134 25 C -0.136 4.136 26 C -0.130 4.130 27 N -0.409 5.409 28 O 0.064 5.936 29 H 0.095 0.905 30 H 0.066 0.934 31 H 0.034 0.966 32 H 0.068 0.932 33 H 0.105 0.895 34 H 0.022 0.978 35 H -0.005 1.005 36 H 0.266 0.734 37 H 0.106 0.894 38 H 0.123 0.877 39 H 0.357 0.643 40 H 0.063 0.937 41 H 0.101 0.899 42 H 0.082 0.918 43 H 0.041 0.959 44 H 0.097 0.903 45 H 0.061 0.939 46 H 0.053 0.947 47 H 0.096 0.904 48 H 0.045 0.955 49 H 0.062 0.938 50 H 0.095 0.905 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.796 -10.673 26.206 28.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.025 4.025 3 N -0.335 5.335 4 C 0.142 3.858 5 C -0.580 4.580 6 H 0.070 0.930 7 C -0.192 4.192 8 N -0.568 5.568 9 Si 0.788 3.212 10 H -0.183 1.183 11 H -0.204 1.204 12 H -0.207 1.207 13 C 0.281 3.719 14 O -0.469 6.469 15 C -0.070 4.070 16 N -0.325 5.325 17 C 0.072 3.928 18 H 0.162 0.838 19 C -0.236 4.236 20 C -0.018 4.018 21 N -0.224 5.224 22 C -0.099 4.099 23 C 0.017 3.983 24 C -0.192 4.192 25 C -0.193 4.193 26 C -0.188 4.188 27 N -0.120 5.120 28 O 0.010 5.990 29 H 0.114 0.886 30 H 0.085 0.915 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.124 0.876 34 H 0.040 0.960 35 H 0.013 0.987 36 H 0.075 0.925 37 H 0.123 0.877 38 H 0.141 0.859 39 H 0.178 0.822 40 H 0.082 0.918 41 H 0.120 0.880 42 H 0.101 0.899 43 H 0.060 0.940 44 H 0.115 0.885 45 H 0.080 0.920 46 H 0.072 0.928 47 H 0.115 0.885 48 H 0.064 0.936 49 H 0.081 0.919 50 H 0.113 0.887 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.520 -9.704 26.500 28.439 hybrid contribution -0.070 0.704 -1.262 1.447 sum -3.590 -9.000 25.238 27.034 Atomic orbital electron populations 1.22161 0.94397 1.03533 1.01800 1.21786 0.95405 0.81185 1.04080 1.48265 1.64025 1.15201 1.06057 1.18651 0.95022 0.91493 0.80642 1.21701 0.98064 1.31855 1.06345 0.93001 1.25834 1.02204 0.94590 0.96563 1.70040 1.37712 1.34303 1.14783 0.85524 0.79268 0.79086 0.77272 1.18313 1.20358 1.20668 1.21266 0.77424 0.86676 0.86558 1.90670 1.47395 1.20933 1.87900 1.21890 1.03548 0.95679 0.85863 1.59831 1.64587 1.07968 1.00154 1.20168 0.91770 0.98231 0.82661 0.83753 1.22524 0.92523 1.03862 1.04676 1.29325 0.95719 0.80248 0.96518 1.71786 1.11569 1.31386 1.07680 1.26409 0.99851 0.83442 1.00191 1.19259 0.92117 0.98566 0.88407 1.21847 0.95692 0.99402 1.02300 1.21817 1.01841 0.93945 1.01727 1.21816 1.00401 0.99681 0.96889 1.74633 1.10049 1.24959 1.02364 1.85276 1.47457 1.29013 1.37222 0.88626 0.91542 0.94666 0.91359 0.87648 0.95986 0.98722 0.92470 0.87691 0.85891 0.82219 0.91808 0.87999 0.89875 0.94023 0.88458 0.92009 0.92782 0.88542 0.93623 0.91885 0.88655 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.40 10.24 71.98 0.74 -2.66 16 2 C 0.10 2.66 5.93 86.38 0.51 3.18 16 3 N -0.60 -24.29 2.46 -826.16 -2.03 -26.32 16 4 C 0.26 14.13 5.16 85.64 0.44 14.57 16 5 C -0.54 -31.41 9.39 25.60 0.24 -31.17 16 6 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 7 C 0.01 0.41 5.46 84.65 0.46 0.87 16 8 N -0.93 -56.79 13.29 21.45 0.28 -56.51 16 9 Si 0.96 45.66 29.54 68.60 2.03 47.69 16 10 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 13 C 0.49 19.29 7.71 87.66 0.68 19.96 16 14 O -0.59 -30.20 15.78 -3.03 -0.05 -30.25 16 15 C 0.06 1.43 4.52 85.56 0.39 1.82 16 16 N -0.69 -17.25 5.86 -499.45 -2.93 -20.17 16 17 C 0.18 3.26 3.13 44.16 0.14 3.40 16 18 H 0.14 1.98 7.80 -2.39 -0.02 1.96 16 19 C -0.18 -2.06 9.14 71.98 0.66 -1.40 16 20 C 0.20 5.00 7.35 88.38 0.65 5.65 16 21 N -0.49 -12.40 11.55 -303.18 -3.50 -15.90 16 22 C 0.17 4.47 6.40 138.46 0.89 5.35 16 23 C 0.02 0.34 0.99 -52.93 -0.05 0.28 16 24 C -0.13 -2.20 8.45 71.98 0.61 -1.60 16 25 C -0.14 -2.25 7.97 71.98 0.57 -1.68 16 26 C -0.13 -1.77 8.46 71.98 0.61 -1.16 16 27 N -0.41 -12.14 11.47 -60.29 -0.69 -12.83 16 28 O 0.06 1.89 11.31 74.84 0.85 2.73 16 29 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 30 H 0.07 1.19 7.22 -2.39 -0.02 1.17 16 31 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.07 2.07 8.07 -2.38 -0.02 2.05 16 33 H 0.11 2.01 6.44 -2.39 -0.02 2.00 16 34 H 0.02 1.20 8.07 -2.39 -0.02 1.18 16 35 H -0.01 -0.33 7.42 -2.39 -0.02 -0.35 16 36 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 37 H 0.11 1.57 6.48 -2.39 -0.02 1.56 16 38 H 0.12 2.38 7.32 -2.39 -0.02 2.36 16 39 H 0.36 9.53 8.17 -89.70 -0.73 8.80 16 40 H 0.06 0.86 8.13 -2.39 -0.02 0.84 16 41 H 0.10 0.77 7.45 -2.39 -0.02 0.75 16 42 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 46 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 50 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 51 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -82.28 419.28 1.67 -80.61 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.18 Total: 15.53 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: 7.53 Total: 15.42 kcal Atomic # 7 Polarization: -122.87 SS G_CDS: -8.86 Total: -131.73 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: 0.80 Total: -27.52 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -82.28 1.67 -80.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185210391.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.302 kcal (2) G-P(sol) polarization free energy of solvation -82.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds