Wall clock time and date at job start Tue Mar 31 2020 22:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42904 * 109.46867 * 2 1 4 4 C 1.42895 * 113.99723 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.46978 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.47300 * 180.02562 * 5 4 3 7 7 N 1.46489 * 109.47063 * 180.02562 * 6 5 4 8 8 C 1.34775 * 119.99738 * 179.97438 * 7 6 5 9 9 O 1.21280 * 120.00388 * 0.02562 * 8 7 6 10 10 C 1.50706 * 119.99919 * 180.02562 * 8 7 6 11 11 H 1.08999 * 109.47314 * 60.00559 * 10 8 7 12 12 C 1.52995 * 109.47032 * 299.99961 * 10 8 7 13 13 N 1.46506 * 109.47053 * 180.02562 * 10 8 7 14 14 C 1.39987 * 119.99573 * 205.00259 * 13 10 8 15 15 C 1.40423 * 125.98212 * 359.97438 * 14 13 10 16 16 C 1.35242 * 107.86716 * 179.97438 * 15 14 13 17 17 C 1.50699 * 126.07150 * 179.97438 * 16 15 14 18 18 N 1.34963 * 107.86343 * 0.02562 * 16 15 14 19 19 C 1.46496 * 125.97356 * 179.97438 * 18 16 15 20 20 C 1.50704 * 109.47005 * 89.99721 * 19 18 16 21 21 H 1.07998 * 120.00245 * 359.97438 * 20 19 18 22 22 C 1.37880 * 119.99958 * 179.97438 * 20 19 18 23 23 N 1.31512 * 119.99979 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00065 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47087 * 0.02562 * 24 22 20 26 26 H 1.48492 * 109.47262 * 120.00228 * 24 22 20 27 27 H 1.48502 * 109.47254 * 240.00613 * 24 22 20 28 28 N 1.31229 * 125.97038 * 179.69181 * 14 13 10 29 29 H 1.09004 * 109.47325 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47407 * 300.00193 * 1 2 3 31 31 H 1.09001 * 109.47018 * 60.00307 * 1 2 3 32 32 H 1.08997 * 109.47391 * 240.00582 * 2 1 3 33 33 H 1.09001 * 109.47018 * 119.99693 * 2 1 3 34 34 H 1.09002 * 109.47182 * 60.00322 * 4 3 2 35 35 H 1.08996 * 109.47580 * 299.99852 * 4 3 2 36 36 H 1.09002 * 109.46753 * 60.00240 * 5 4 3 37 37 H 1.08997 * 109.47450 * 300.00661 * 5 4 3 38 38 H 1.08994 * 109.46666 * 59.99922 * 6 5 4 39 39 H 1.09003 * 109.46692 * 300.00614 * 6 5 4 40 40 H 0.97003 * 120.00690 * 0.02562 * 7 6 5 41 41 H 1.09003 * 109.47335 * 179.97438 * 12 10 8 42 42 H 1.09002 * 109.47311 * 299.99990 * 12 10 8 43 43 H 1.09002 * 109.46959 * 60.00275 * 12 10 8 44 44 H 0.96995 * 120.00050 * 24.72311 * 13 10 8 45 45 H 1.08004 * 126.06171 * 0.02562 * 15 14 13 46 46 H 1.09004 * 109.46949 * 90.02345 * 17 16 15 47 47 H 1.08994 * 109.47367 * 210.02606 * 17 16 15 48 48 H 1.09004 * 109.46903 * 330.03267 * 17 16 15 49 49 H 1.08995 * 109.47253 * 209.99637 * 19 18 16 50 50 H 1.08993 * 109.47213 * 329.99861 * 19 18 16 51 51 H 0.96998 * 120.00252 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4307 1.4602 0.0006 5 6 3.8252 2.9385 -0.0001 6 6 5.3505 3.0594 -0.0001 7 7 5.7281 4.4748 -0.0002 8 6 7.0296 4.8249 0.0003 9 8 7.8881 3.9683 0.0003 10 6 7.4182 6.2810 0.0008 11 1 7.0152 6.7643 0.8909 12 6 6.8532 6.9601 -1.2484 13 7 8.8786 6.3967 0.0007 14 6 9.4896 7.5471 0.5135 15 6 8.8280 8.6608 1.0557 16 6 9.7671 9.5556 1.4383 17 6 9.5075 10.8981 2.0718 18 7 10.9779 9.0335 1.1509 19 6 12.2721 9.6728 1.4009 20 6 12.7630 9.2930 2.7742 21 1 12.1701 8.6409 3.3985 22 6 13.9692 9.7779 3.2337 23 7 14.6910 10.5723 2.4738 24 14 14.5781 9.3065 4.9356 25 1 13.5889 8.4086 5.5841 26 1 15.8811 8.6042 4.8182 27 1 14.7483 10.5317 5.7574 28 7 10.7811 7.7712 0.5763 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8339 0.9765 -0.8892 35 1 3.8332 0.9768 0.8908 36 1 3.4220 3.4225 0.8895 37 1 3.4228 3.4216 -0.8905 38 1 5.7532 2.5754 -0.8898 39 1 5.7532 2.5762 0.8901 40 1 5.0416 5.1600 0.0002 41 1 7.1338 8.0133 -1.2478 42 1 7.2562 6.4768 -2.1384 43 1 5.7666 6.8740 -1.2487 44 1 9.4223 5.6746 -0.3510 45 1 7.7589 8.7809 1.1510 46 1 9.4786 10.7887 3.1560 47 1 10.3042 11.5895 1.7975 48 1 8.5518 11.2870 1.7204 49 1 12.9920 9.3406 0.6530 50 1 12.1601 10.7553 1.3417 51 1 15.5394 10.9137 2.7971 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271029513.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:04 Heat of formation + Delta-G solvation = -19.529305 kcal Electronic energy + Delta-G solvation = -28155.286347 eV Core-core repulsion = 24091.081464 eV Total energy + Delta-G solvation = -4064.204883 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.44119 -39.94622 -38.63330 -36.17495 -35.50182 -33.52477 -32.94917 -31.95291 -31.03317 -30.75046 -29.37489 -26.54285 -26.14076 -26.08662 -23.91753 -23.29630 -22.73085 -22.09860 -20.59419 -19.58019 -19.10313 -17.43713 -17.05305 -16.96012 -16.63376 -16.39824 -15.95134 -15.68752 -15.04115 -14.95852 -14.75517 -14.45924 -14.21495 -14.05832 -13.83136 -13.51886 -13.14175 -13.07833 -12.83138 -12.47621 -12.43635 -12.27921 -12.22881 -12.20289 -12.15387 -12.02629 -11.73616 -11.52041 -11.46405 -11.41437 -11.33591 -10.99232 -10.77436 -10.25236 -10.11191 -10.03872 -9.92694 -9.54016 -9.40691 -9.17826 -8.59260 -7.74111 -7.00884 -6.19190 -4.26795 2.43068 2.58013 2.91762 3.17235 3.23682 3.31639 3.36826 3.43125 3.77239 4.19496 4.37000 4.38033 4.40358 4.52606 4.53944 4.63674 4.77046 4.85977 4.93682 4.97604 4.98837 5.09768 5.13867 5.20393 5.22262 5.36615 5.38982 5.48441 5.57736 5.58313 5.63383 5.67877 5.79138 6.00820 6.06579 6.08762 6.10744 6.25164 6.34341 6.67994 6.69673 6.88141 7.09954 7.15007 7.24781 7.73272 7.74969 7.96402 7.96774 8.16589 8.27023 8.79540 8.95568 9.39313 10.87346 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.020656 B = 0.001595 C = 0.001546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.189187 B =17550.684161 C =18108.451584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.391 6.391 4 C 0.066 3.934 5 C -0.130 4.130 6 C 0.122 3.878 7 N -0.730 5.730 8 C 0.512 3.488 9 O -0.528 6.528 10 C 0.156 3.844 11 H 0.102 0.898 12 C -0.164 4.164 13 N -0.711 5.711 14 C 0.316 3.684 15 C -0.339 4.339 16 C 0.107 3.893 17 C -0.086 4.086 18 N -0.324 5.324 19 C 0.260 3.740 20 C -0.532 4.532 21 H 0.064 0.936 22 C 0.065 3.935 23 N -0.893 5.893 24 Si 0.905 3.095 25 H -0.272 1.272 26 H -0.281 1.281 27 H -0.281 1.281 28 N -0.344 5.344 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.403 0.597 41 H 0.077 0.923 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.407 0.593 45 H 0.129 0.871 46 H 0.076 0.924 47 H 0.072 0.928 48 H 0.070 0.930 49 H 0.051 0.949 50 H 0.051 0.949 51 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.129 -13.106 -6.290 31.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.310 6.310 4 C -0.012 4.012 5 C -0.168 4.168 6 C -0.002 4.002 7 N -0.383 5.383 8 C 0.298 3.702 9 O -0.403 6.403 10 C 0.045 3.955 11 H 0.120 0.880 12 C -0.223 4.223 13 N -0.355 5.355 14 C 0.060 3.940 15 C -0.372 4.372 16 C -0.026 4.026 17 C -0.144 4.144 18 N -0.104 5.104 19 C 0.142 3.858 20 C -0.571 4.571 21 H 0.082 0.918 22 C -0.138 4.138 23 N -0.531 5.531 24 Si 0.732 3.268 25 H -0.196 1.196 26 H -0.207 1.207 27 H -0.207 1.207 28 N -0.175 5.175 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.238 0.762 41 H 0.096 0.904 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.244 0.756 45 H 0.147 0.853 46 H 0.095 0.905 47 H 0.091 0.909 48 H 0.089 0.911 49 H 0.069 0.931 50 H 0.069 0.931 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -26.261 -13.794 -6.481 30.362 hybrid contribution -0.307 -0.199 0.999 1.064 sum -26.567 -13.993 -5.482 30.523 Atomic orbital electron populations 1.21751 0.93620 1.02355 1.03210 1.22474 0.95689 0.83560 1.00219 1.87861 1.20947 1.26721 1.95497 1.22322 0.81451 0.96602 1.00778 1.21674 0.94600 0.96268 1.04286 1.21166 0.93709 0.82415 1.02881 1.45867 1.07510 1.08281 1.76685 1.20886 0.82274 0.91619 0.75443 1.90723 1.49359 1.51927 1.48318 1.20396 0.83333 0.91332 1.00399 0.87987 1.22289 1.00013 1.02632 0.97392 1.43011 1.02646 1.18260 1.71621 1.18967 0.90802 0.88015 0.96228 1.20408 0.98701 0.96852 1.21229 1.20846 0.86196 0.96756 0.98814 1.20342 1.02017 0.91433 1.00603 1.48924 1.06737 1.11058 1.43714 1.19606 0.75894 0.92364 0.97973 1.21388 1.05279 1.30615 0.99807 0.91762 1.24922 0.96005 0.94672 0.98228 1.69929 1.13647 1.32645 1.36903 0.86325 0.78842 0.78369 0.83291 1.19612 1.20688 1.20705 1.77413 1.13673 1.00078 1.26341 0.91025 0.91784 0.91810 0.93308 0.93286 0.92892 0.92852 0.90187 0.90224 0.91164 0.91151 0.76233 0.90439 0.91924 0.91868 0.75577 0.85300 0.90515 0.90886 0.91066 0.93147 0.93085 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 10.28 37.16 0.38 -0.29 16 2 C 0.06 0.31 6.66 37.16 0.25 0.56 16 3 O -0.39 -2.94 10.34 -35.23 -0.36 -3.31 16 4 C 0.07 0.39 5.94 37.16 0.22 0.61 16 5 C -0.13 -0.70 5.70 -26.72 -0.15 -0.85 16 6 C 0.12 0.88 5.67 -4.04 -0.02 0.86 16 7 N -0.73 -5.71 5.45 -60.30 -0.33 -6.03 16 8 C 0.51 6.08 7.22 -10.98 -0.08 6.00 16 9 O -0.53 -8.51 15.83 5.56 0.09 -8.42 16 10 C 0.16 1.85 2.98 -69.08 -0.21 1.64 16 11 H 0.10 1.11 7.14 -51.93 -0.37 0.74 16 12 C -0.16 -1.52 9.40 37.16 0.35 -1.17 16 13 N -0.71 -11.81 5.16 -54.70 -0.28 -12.09 16 14 C 0.32 6.36 8.14 -154.55 -1.26 5.10 16 15 C -0.34 -6.23 9.83 -39.83 -0.39 -6.63 16 16 C 0.11 2.17 6.92 -82.28 -0.57 1.60 16 17 C -0.09 -1.39 10.11 36.01 0.36 -1.02 16 18 N -0.32 -7.80 3.59 -58.33 -0.21 -8.01 16 19 C 0.26 6.82 5.99 -5.19 -0.03 6.78 16 20 C -0.53 -15.02 9.39 -34.44 -0.32 -15.34 16 21 H 0.06 1.88 7.81 -52.49 -0.41 1.47 16 22 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 23 N -0.89 -25.55 13.29 55.43 0.74 -24.82 16 24 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 25 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 28 N -0.34 -8.32 12.59 31.41 0.40 -7.92 16 29 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 33 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.40 1.98 7.89 -40.82 -0.32 1.66 16 41 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.38 7.56 -51.93 -0.39 -0.02 16 44 H 0.41 7.19 7.91 -40.82 -0.32 6.86 16 45 H 0.13 1.90 7.45 -52.48 -0.39 1.51 16 46 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 47 H 0.07 1.22 7.07 -51.93 -0.37 0.86 16 48 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 49 H 0.05 1.43 8.14 -51.93 -0.42 1.00 16 50 H 0.05 1.31 7.04 -51.93 -0.37 0.95 16 51 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 425.27 15.07 6.41 6.41 Total: -1.00 -34.73 425.27 -8.99 -43.71 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -8.84 Total: 4.39 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -1.57 Total: -0.45 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: 0.31 Total: -58.87 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: -0.28 Total: -11.73 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 6.41 Total: 6.41 kcal Total: -34.73 -8.99 -43.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271029513.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.185 kcal (2) G-P(sol) polarization free energy of solvation -34.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds