Wall clock time and date at job start Tue Mar 31 2020 22:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42904 * 109.46867 * 2 1 4 4 C 1.42895 * 113.99723 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.46978 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.47300 * 180.02562 * 5 4 3 7 7 N 1.46489 * 109.47063 * 180.02562 * 6 5 4 8 8 C 1.34775 * 119.99738 * 179.97438 * 7 6 5 9 9 O 1.21280 * 120.00388 * 0.02562 * 8 7 6 10 10 C 1.50706 * 119.99919 * 180.02562 * 8 7 6 11 11 H 1.08999 * 109.47314 * 60.00559 * 10 8 7 12 12 C 1.52995 * 109.47032 * 299.99961 * 10 8 7 13 13 N 1.46506 * 109.47053 * 180.02562 * 10 8 7 14 14 C 1.39987 * 119.99573 * 205.00259 * 13 10 8 15 15 C 1.40423 * 125.98212 * 359.97438 * 14 13 10 16 16 C 1.35242 * 107.86716 * 179.97438 * 15 14 13 17 17 C 1.50699 * 126.07150 * 179.97438 * 16 15 14 18 18 N 1.34963 * 107.86343 * 0.02562 * 16 15 14 19 19 C 1.46496 * 125.97356 * 179.97438 * 18 16 15 20 20 C 1.50704 * 109.47005 * 89.99721 * 19 18 16 21 21 H 1.07998 * 120.00245 * 359.97438 * 20 19 18 22 22 C 1.37880 * 119.99958 * 179.97438 * 20 19 18 23 23 N 1.31512 * 119.99979 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00065 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47087 * 0.02562 * 24 22 20 26 26 H 1.48492 * 109.47262 * 120.00228 * 24 22 20 27 27 H 1.48502 * 109.47254 * 240.00613 * 24 22 20 28 28 N 1.31229 * 125.97038 * 179.69181 * 14 13 10 29 29 H 1.09004 * 109.47325 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47407 * 300.00193 * 1 2 3 31 31 H 1.09001 * 109.47018 * 60.00307 * 1 2 3 32 32 H 1.08997 * 109.47391 * 240.00582 * 2 1 3 33 33 H 1.09001 * 109.47018 * 119.99693 * 2 1 3 34 34 H 1.09002 * 109.47182 * 60.00322 * 4 3 2 35 35 H 1.08996 * 109.47580 * 299.99852 * 4 3 2 36 36 H 1.09002 * 109.46753 * 60.00240 * 5 4 3 37 37 H 1.08997 * 109.47450 * 300.00661 * 5 4 3 38 38 H 1.08994 * 109.46666 * 59.99922 * 6 5 4 39 39 H 1.09003 * 109.46692 * 300.00614 * 6 5 4 40 40 H 0.97003 * 120.00690 * 0.02562 * 7 6 5 41 41 H 1.09003 * 109.47335 * 179.97438 * 12 10 8 42 42 H 1.09002 * 109.47311 * 299.99990 * 12 10 8 43 43 H 1.09002 * 109.46959 * 60.00275 * 12 10 8 44 44 H 0.96995 * 120.00050 * 24.72311 * 13 10 8 45 45 H 1.08004 * 126.06171 * 0.02562 * 15 14 13 46 46 H 1.09004 * 109.46949 * 90.02345 * 17 16 15 47 47 H 1.08994 * 109.47367 * 210.02606 * 17 16 15 48 48 H 1.09004 * 109.46903 * 330.03267 * 17 16 15 49 49 H 1.08995 * 109.47253 * 209.99637 * 19 18 16 50 50 H 1.08993 * 109.47213 * 329.99861 * 19 18 16 51 51 H 0.96998 * 120.00252 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4307 1.4602 0.0006 5 6 3.8252 2.9385 -0.0001 6 6 5.3505 3.0594 -0.0001 7 7 5.7281 4.4748 -0.0002 8 6 7.0296 4.8249 0.0003 9 8 7.8881 3.9683 0.0003 10 6 7.4182 6.2810 0.0008 11 1 7.0152 6.7643 0.8909 12 6 6.8532 6.9601 -1.2484 13 7 8.8786 6.3967 0.0007 14 6 9.4896 7.5471 0.5135 15 6 8.8280 8.6608 1.0557 16 6 9.7671 9.5556 1.4383 17 6 9.5075 10.8981 2.0718 18 7 10.9779 9.0335 1.1509 19 6 12.2721 9.6728 1.4009 20 6 12.7630 9.2930 2.7742 21 1 12.1701 8.6409 3.3985 22 6 13.9692 9.7779 3.2337 23 7 14.6910 10.5723 2.4738 24 14 14.5781 9.3065 4.9356 25 1 13.5889 8.4086 5.5841 26 1 15.8811 8.6042 4.8182 27 1 14.7483 10.5317 5.7574 28 7 10.7811 7.7712 0.5763 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8339 0.9765 -0.8892 35 1 3.8332 0.9768 0.8908 36 1 3.4220 3.4225 0.8895 37 1 3.4228 3.4216 -0.8905 38 1 5.7532 2.5754 -0.8898 39 1 5.7532 2.5762 0.8901 40 1 5.0416 5.1600 0.0002 41 1 7.1338 8.0133 -1.2478 42 1 7.2562 6.4768 -2.1384 43 1 5.7666 6.8740 -1.2487 44 1 9.4223 5.6746 -0.3510 45 1 7.7589 8.7809 1.1510 46 1 9.4786 10.7887 3.1560 47 1 10.3042 11.5895 1.7975 48 1 8.5518 11.2870 1.7204 49 1 12.9920 9.3406 0.6530 50 1 12.1601 10.7553 1.3417 51 1 15.5394 10.9137 2.7971 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271029513.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:03 Heat of formation + Delta-G solvation = -43.771800 kcal Electronic energy + Delta-G solvation = -28156.337581 eV Core-core repulsion = 24091.081464 eV Total energy + Delta-G solvation = -4065.256117 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.92248 -40.99515 -39.11851 -37.21246 -36.46794 -35.45408 -33.83640 -33.16036 -32.50829 -31.57696 -30.52178 -28.32149 -27.62224 -26.78498 -25.11454 -24.35369 -23.68607 -22.64114 -21.64935 -21.05120 -20.48771 -18.78400 -18.23661 -17.93668 -17.52519 -17.43421 -16.99440 -16.69862 -16.42101 -16.02428 -15.83594 -15.68835 -15.47927 -15.06875 -14.85380 -14.47093 -14.40703 -14.15628 -13.82572 -13.67259 -13.50790 -13.47522 -13.34947 -13.20500 -13.03037 -12.74910 -12.72474 -12.68270 -12.64685 -12.61537 -12.52604 -12.21980 -11.94990 -11.87997 -11.86175 -11.14950 -11.00931 -10.80088 -10.72711 -10.56064 -10.17490 -9.33756 -8.60874 -8.25092 -6.48939 1.28842 1.35723 1.38638 1.49797 1.51206 1.59551 2.05509 2.27226 2.34359 2.73907 2.84258 2.97572 3.64005 3.93851 3.95252 4.04052 4.09086 4.11294 4.17144 4.22423 4.35274 4.37711 4.47103 4.49351 4.52170 4.54459 4.67908 4.72303 4.78482 4.86058 4.87935 4.90910 4.95860 5.02561 5.03610 5.11106 5.11203 5.14197 5.28192 5.31974 5.34822 5.37610 5.55653 5.64330 5.85264 6.24782 6.28514 6.39487 6.51993 6.68621 6.75715 7.14398 7.22295 7.37121 8.74542 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.020656 B = 0.001595 C = 0.001546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.189187 B =17550.684161 C =18108.451584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.410 6.410 4 C 0.061 3.939 5 C -0.117 4.117 6 C 0.123 3.877 7 N -0.707 5.707 8 C 0.513 3.487 9 O -0.578 6.578 10 C 0.152 3.848 11 H 0.121 0.879 12 C -0.156 4.156 13 N -0.712 5.712 14 C 0.320 3.680 15 C -0.325 4.325 16 C 0.096 3.904 17 C -0.082 4.082 18 N -0.356 5.356 19 C 0.278 3.722 20 C -0.550 4.550 21 H 0.047 0.953 22 C 0.021 3.979 23 N -0.920 5.920 24 Si 0.971 3.029 25 H -0.275 1.275 26 H -0.277 1.277 27 H -0.263 1.263 28 N -0.408 5.408 29 H 0.087 0.913 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.421 0.579 41 H 0.070 0.930 42 H 0.051 0.949 43 H 0.105 0.895 44 H 0.398 0.602 45 H 0.174 0.826 46 H 0.080 0.920 47 H 0.060 0.940 48 H 0.114 0.886 49 H 0.014 0.986 50 H 0.050 0.950 51 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.262 -12.920 -5.505 34.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 O -0.330 6.330 4 C -0.016 4.016 5 C -0.155 4.155 6 C 0.000 4.000 7 N -0.361 5.361 8 C 0.299 3.701 9 O -0.457 6.457 10 C 0.043 3.957 11 H 0.138 0.862 12 C -0.215 4.215 13 N -0.354 5.354 14 C 0.063 3.937 15 C -0.357 4.357 16 C -0.036 4.036 17 C -0.140 4.140 18 N -0.136 5.136 19 C 0.158 3.842 20 C -0.589 4.589 21 H 0.065 0.935 22 C -0.179 4.179 23 N -0.558 5.558 24 Si 0.795 3.205 25 H -0.200 1.200 26 H -0.202 1.202 27 H -0.188 1.188 28 N -0.240 5.240 29 H 0.106 0.894 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.259 0.741 41 H 0.089 0.911 42 H 0.070 0.930 43 H 0.124 0.876 44 H 0.234 0.766 45 H 0.191 0.809 46 H 0.099 0.901 47 H 0.079 0.921 48 H 0.133 0.867 49 H 0.032 0.968 50 H 0.068 0.932 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -29.504 -13.590 -5.709 32.981 hybrid contribution 0.525 -0.357 0.681 0.931 sum -28.979 -13.946 -5.028 32.551 Atomic orbital electron populations 1.21770 0.93018 1.03294 1.02736 1.22643 0.96275 0.82904 1.00833 1.87826 1.21609 1.27937 1.95626 1.22393 0.81004 0.96982 1.01197 1.21541 0.92833 0.96187 1.04944 1.21180 0.95001 0.81684 1.02173 1.45690 1.06549 1.09250 1.74621 1.20903 0.83007 0.91150 0.75028 1.90714 1.50985 1.53030 1.51009 1.20752 0.80579 0.91873 1.02540 0.86178 1.22240 1.02467 1.01458 0.95317 1.43329 1.04676 1.16790 1.70633 1.19345 0.90121 0.89241 0.94948 1.20833 1.00408 0.95157 1.19324 1.21693 0.85086 0.98491 0.98284 1.20480 1.03810 0.89133 1.00621 1.48635 1.06930 1.11767 1.46314 1.19081 0.76854 0.92195 0.96026 1.21500 1.05909 1.30863 1.00596 0.93489 1.25740 0.95831 0.94304 1.02043 1.70012 1.14067 1.33122 1.38615 0.85316 0.77981 0.78541 0.78667 1.19958 1.20216 1.18806 1.77292 1.16459 1.01125 1.29114 0.89433 0.92284 0.92201 0.92618 0.92753 0.92397 0.92635 0.89661 0.89342 0.91710 0.92191 0.74108 0.91115 0.92954 0.87640 0.76647 0.80859 0.90099 0.92128 0.86709 0.96811 0.93200 0.91801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.28 71.98 0.74 -0.41 16 2 C 0.05 0.48 6.66 71.98 0.48 0.96 16 3 O -0.41 -5.58 10.34 -148.98 -1.54 -7.12 16 4 C 0.06 0.63 5.94 71.98 0.43 1.06 16 5 C -0.12 -0.99 5.70 30.60 0.17 -0.82 16 6 C 0.12 1.57 5.67 86.38 0.49 2.06 16 7 N -0.71 -9.28 5.45 -463.07 -2.52 -11.81 16 8 C 0.51 11.42 7.22 87.66 0.63 12.05 16 9 O -0.58 -18.69 15.83 -3.03 -0.05 -18.74 16 10 C 0.15 3.25 2.98 44.24 0.13 3.38 16 11 H 0.12 2.16 7.14 -2.39 -0.02 2.15 16 12 C -0.16 -2.41 9.40 71.98 0.68 -1.74 16 13 N -0.71 -23.41 5.16 -326.96 -1.69 -25.10 16 14 C 0.32 12.88 8.14 133.39 1.09 13.96 16 15 C -0.33 -11.29 9.83 22.11 0.22 -11.08 16 16 C 0.10 3.80 6.92 41.39 0.29 4.09 16 17 C -0.08 -2.52 10.11 71.24 0.72 -1.80 16 18 N -0.36 -17.67 3.59 -338.47 -1.22 -18.88 16 19 C 0.28 15.34 5.99 85.64 0.51 15.86 16 20 C -0.55 -32.11 9.39 25.60 0.24 -31.87 16 21 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 22 C 0.02 1.21 5.46 84.66 0.46 1.67 16 23 N -0.92 -53.52 13.29 21.45 0.28 -53.23 16 24 Si 0.97 44.49 29.54 68.60 2.03 46.52 16 25 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 26 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 27 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 28 N -0.41 -20.47 12.59 -54.55 -0.69 -21.16 16 29 H 0.09 0.37 8.14 -2.38 -0.02 0.35 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.42 2.50 7.89 -92.71 -0.73 1.77 16 41 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.11 0.74 7.56 -2.39 -0.02 0.72 16 44 H 0.40 14.48 7.91 -92.71 -0.73 13.75 16 45 H 0.17 4.31 7.45 -2.91 -0.02 4.29 16 46 H 0.08 2.41 8.14 -2.38 -0.02 2.40 16 47 H 0.06 2.00 7.07 -2.39 -0.02 1.98 16 48 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 49 H 0.01 0.84 8.14 -2.39 -0.02 0.82 16 50 H 0.05 2.70 7.04 -2.39 -0.02 2.68 16 51 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -79.49 425.27 1.35 -78.14 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: -0.54 Total: 24.00 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: 7.28 Total: 7.37 kcal Atomic # 7 Polarization: -124.35 SS G_CDS: -5.83 Total: -130.18 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -1.59 Total: -25.86 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -79.49 1.35 -78.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271029513.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.373 kcal (2) G-P(sol) polarization free energy of solvation -79.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds