Wall clock time and date at job start Tue Mar 31 2020 22:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 114.00535 * 2 1 4 4 H 1.09005 * 109.46927 * 30.00017 * 3 2 1 5 5 C 1.50701 * 109.47266 * 150.00187 * 3 2 1 6 6 O 1.21286 * 119.99930 * 20.65425 * 5 3 2 7 7 N 1.34774 * 120.00078 * 200.65640 * 5 3 2 8 8 C 1.46504 * 119.99623 * 5.63512 * 7 5 3 9 9 C 1.50701 * 109.47161 * 84.77825 * 8 7 5 10 10 H 1.08004 * 120.00045 * 359.97438 * 9 8 7 11 11 C 1.37878 * 120.00044 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99989 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99909 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47212 * 59.99813 * 13 11 9 15 15 H 1.48503 * 109.47310 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47089 * 299.99913 * 13 11 9 17 17 C 1.46494 * 120.00366 * 185.63708 * 7 5 3 18 18 C 1.52998 * 109.47071 * 89.99673 * 17 7 5 19 19 C 1.53002 * 109.46851 * 180.02562 * 18 17 7 20 20 N 1.46903 * 109.46937 * 180.02562 * 19 18 17 21 21 C 1.46904 * 110.99989 * 66.04362 * 20 19 18 22 22 C 1.46900 * 110.99835 * 189.99743 * 20 19 18 23 23 C 1.50702 * 109.47421 * 270.00422 * 3 2 1 24 24 C 1.39875 * 126.03754 * 320.91604 * 23 3 2 25 25 N 1.30828 * 108.20132 * 179.73528 * 24 23 3 26 26 N 1.40088 * 108.20870 * 0.02562 * 25 24 23 27 27 C 1.46503 * 126.03692 * 179.97438 * 26 25 24 28 28 C 1.34944 * 107.92163 * 359.97438 * 26 25 24 29 29 H 1.08990 * 109.47565 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46717 * 300.00239 * 1 2 3 31 31 H 1.09005 * 109.47129 * 59.99450 * 1 2 3 32 32 H 1.09008 * 109.47058 * 204.76761 * 8 7 5 33 33 H 1.08998 * 109.47573 * 324.77174 * 8 7 5 34 34 H 0.96999 * 119.99695 * 179.97438 * 12 11 9 35 35 H 1.08997 * 109.47508 * 209.99946 * 17 7 5 36 36 H 1.09006 * 109.46861 * 329.99961 * 17 7 5 37 37 H 1.08992 * 109.47544 * 300.00157 * 18 17 7 38 38 H 1.08996 * 109.47004 * 60.00430 * 18 17 7 39 39 H 1.08999 * 109.46973 * 299.99479 * 19 18 17 40 40 H 1.08996 * 109.47374 * 60.00157 * 19 18 17 41 41 H 1.08998 * 109.46839 * 60.00178 * 21 20 19 42 42 H 1.09008 * 109.47074 * 179.97438 * 21 20 19 43 43 H 1.08995 * 109.47068 * 300.00102 * 21 20 19 44 44 H 1.08998 * 109.47018 * 60.00329 * 22 20 19 45 45 H 1.09006 * 109.46908 * 180.02562 * 22 20 19 46 46 H 1.08999 * 109.47184 * 299.99414 * 22 20 19 47 47 H 1.07999 * 125.89648 * 359.70920 * 24 23 3 48 48 H 1.08996 * 109.47100 * 89.97303 * 27 26 25 49 49 H 1.09002 * 109.46382 * 209.96959 * 27 26 25 50 50 H 1.08996 * 109.46850 * 329.96292 * 27 26 25 51 51 H 1.08005 * 126.12696 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 1 1.3451 1.9994 0.5139 5 6 3.3388 1.2637 0.7104 6 8 3.9248 0.2097 0.8392 7 7 3.8756 2.3977 1.2026 8 6 3.1140 3.6484 1.1573 9 6 2.2028 3.7253 2.3551 10 1 2.1917 2.9226 3.0777 11 6 1.3832 4.8203 2.5287 12 7 1.3970 5.7980 1.6492 13 14 0.2531 4.9152 4.0131 14 1 1.0643 4.8736 5.2563 15 1 -0.5179 6.1836 3.9680 16 1 -0.6850 3.7642 3.9954 17 6 5.2206 2.3798 1.7828 18 6 6.2514 2.6692 0.6898 19 6 7.6562 2.6498 1.2957 20 7 8.6459 2.9283 0.2464 21 6 8.5031 4.2994 -0.2614 22 6 10.0108 2.6865 0.7326 23 6 2.2146 1.7644 -1.4208 24 6 2.6409 0.9688 -2.4894 25 7 2.6928 1.7175 -3.5610 26 7 2.3012 3.0153 -3.2077 27 6 2.2192 4.1665 -4.1101 28 6 2.0129 3.0176 -1.8894 29 1 -0.3634 -1.0275 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 3.8023 4.4936 1.1697 33 1 2.5183 3.6783 0.2450 34 1 0.8201 6.5682 1.7712 35 1 5.2915 3.1409 2.5597 36 1 5.4163 1.3989 2.2162 37 1 6.1807 1.9081 -0.0871 38 1 6.0558 3.6500 0.2564 39 1 7.7273 3.4109 2.0728 40 1 7.8516 1.6689 1.7288 41 1 8.6509 5.0064 0.5549 42 1 9.2481 4.4792 -1.0366 43 1 7.5048 4.4300 -0.6790 44 1 10.1086 1.6446 1.0375 45 1 10.7235 2.9007 -0.0639 46 1 10.2132 3.3351 1.5849 47 1 2.8853 -0.0819 -2.4384 48 1 1.2220 4.2150 -4.5474 49 1 2.4155 5.0812 -3.5506 50 1 2.9592 4.0599 -4.9032 51 1 1.6805 3.8676 -1.3118 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281481167.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:40 Heat of formation + Delta-G solvation = -7.617260 kcal Electronic energy + Delta-G solvation = -31304.048550 eV Core-core repulsion = 27240.360211 eV Total energy + Delta-G solvation = -4063.688338 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.36266 -40.75898 -38.82366 -38.27590 -36.79795 -34.77127 -34.24876 -33.23511 -31.90694 -29.34210 -29.18619 -28.49788 -27.35550 -27.35287 -25.85533 -24.82750 -23.64625 -22.04305 -21.84708 -21.63222 -20.02023 -18.66876 -18.51609 -17.65547 -17.59015 -16.70716 -16.53881 -16.42664 -16.27110 -16.22721 -16.06371 -15.79587 -15.32105 -15.23922 -15.03971 -14.72790 -14.25403 -14.11658 -13.97224 -13.65470 -13.50586 -13.41254 -13.27835 -13.16984 -13.11462 -12.99390 -12.72336 -12.63494 -12.56968 -12.40046 -12.38306 -12.22620 -11.98414 -11.74010 -11.67576 -11.50144 -10.99704 -10.61877 -10.51516 -10.34113 -9.44180 -9.38652 -9.32165 -8.18364 -6.31127 0.84682 1.44140 1.46576 1.51671 1.55058 1.64904 1.87277 2.08888 2.43106 2.97452 3.11831 3.16920 3.63052 3.84383 3.94421 4.00538 4.13284 4.18232 4.22749 4.32863 4.36779 4.39795 4.44960 4.45750 4.50778 4.59600 4.60247 4.63876 4.66176 4.69757 4.73602 4.78713 4.82800 4.84379 4.93445 4.97085 4.99137 5.00009 5.13493 5.22256 5.30015 5.57681 5.68335 5.85746 6.03461 6.04530 6.09438 6.11043 6.18451 6.56218 6.66462 6.83284 7.32885 7.43897 8.86276 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.006818 B = 0.004931 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4105.570723 B = 5677.267587 C = 7368.640809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.381 6.381 3 C 0.163 3.837 4 H 0.093 0.907 5 C 0.524 3.476 6 O -0.582 6.582 7 N -0.593 5.593 8 C 0.247 3.753 9 C -0.552 4.552 10 H 0.047 0.953 11 C 0.035 3.965 12 N -0.909 5.909 13 Si 0.945 3.055 14 H -0.278 1.278 15 H -0.280 1.280 16 H -0.272 1.272 17 C 0.120 3.880 18 C -0.109 4.109 19 C 0.066 3.934 20 N -0.566 5.566 21 C 0.023 3.977 22 C 0.025 3.975 23 C -0.272 4.272 24 C 0.069 3.931 25 N -0.319 5.319 26 N -0.371 5.371 27 C 0.092 3.908 28 C 0.085 3.915 29 H 0.109 0.891 30 H 0.043 0.957 31 H 0.047 0.953 32 H 0.022 0.978 33 H 0.046 0.954 34 H 0.269 0.731 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.045 0.955 38 H 0.057 0.943 39 H 0.043 0.957 40 H 0.078 0.922 41 H 0.030 0.970 42 H 0.080 0.920 43 H 0.057 0.943 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.030 0.970 47 H 0.184 0.816 48 H 0.092 0.908 49 H 0.105 0.895 50 H 0.098 0.902 51 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.948 0.154 -6.689 8.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.299 6.299 3 C 0.101 3.899 4 H 0.111 0.889 5 C 0.312 3.688 6 O -0.463 6.463 7 N -0.324 5.324 8 C 0.126 3.874 9 C -0.590 4.590 10 H 0.065 0.935 11 C -0.167 4.167 12 N -0.548 5.548 13 Si 0.771 3.229 14 H -0.203 1.203 15 H -0.205 1.205 16 H -0.198 1.198 17 C -0.003 4.003 18 C -0.148 4.148 19 C -0.062 4.062 20 N -0.291 5.291 21 C -0.125 4.125 22 C -0.122 4.122 23 C -0.284 4.284 24 C -0.117 4.117 25 N -0.141 5.141 26 N -0.153 5.153 27 C -0.047 4.047 28 C -0.063 4.063 29 H 0.127 0.873 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.040 0.960 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.096 0.904 41 H 0.048 0.952 42 H 0.099 0.901 43 H 0.076 0.924 44 H 0.089 0.911 45 H 0.097 0.903 46 H 0.049 0.951 47 H 0.201 0.799 48 H 0.111 0.889 49 H 0.123 0.877 50 H 0.117 0.883 51 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 5.451 -0.491 -8.434 10.054 hybrid contribution -0.942 1.018 2.468 2.831 sum 4.509 0.528 -5.966 7.497 Atomic orbital electron populations 1.22993 0.79324 1.04007 1.00470 1.87896 1.21368 1.25707 1.94890 1.19818 0.92918 0.86015 0.91139 0.88919 1.20465 0.87097 0.83221 0.78022 1.90559 1.64203 1.31067 1.60440 1.48073 1.16430 1.09936 1.57983 1.19326 0.90628 0.80162 0.97259 1.21641 1.23160 1.05029 1.09173 0.93466 1.25433 0.97808 0.94897 0.98520 1.69940 1.39699 1.08842 1.36302 0.85814 0.79219 0.77585 0.80328 1.20319 1.20482 1.19762 1.21324 0.81099 1.02222 0.95698 1.21715 0.93888 1.01157 0.98085 1.21955 0.90535 1.01382 0.92336 1.61945 1.04938 1.26051 1.36142 1.22427 1.02572 0.87667 0.99828 1.22420 0.88506 1.01729 0.99575 1.20081 1.17535 0.94639 0.96145 1.23729 0.97988 1.00411 0.89533 1.77252 1.23746 0.89455 1.23608 1.48818 1.50555 1.08783 1.07132 1.22240 1.04904 0.83824 0.93735 1.22659 0.99041 0.99067 0.85575 0.87308 0.93867 0.93455 0.95965 0.93634 0.92187 0.90179 0.91372 0.93565 0.92392 0.93923 0.90368 0.95160 0.90143 0.92369 0.91060 0.90257 0.95091 0.79871 0.88913 0.87669 0.88344 0.79500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 10.81 113.37 1.23 2.06 16 2 O -0.38 -14.87 9.73 -130.81 -1.27 -16.14 16 3 C 0.16 6.61 2.17 29.10 0.06 6.67 16 4 H 0.09 3.93 6.13 -2.38 -0.01 3.91 16 5 C 0.52 23.58 6.86 87.66 0.60 24.18 16 6 O -0.58 -28.91 16.18 15.12 0.24 -28.67 16 7 N -0.59 -25.40 2.47 -826.15 -2.04 -27.44 16 8 C 0.25 11.12 4.81 85.63 0.41 11.54 16 9 C -0.55 -27.26 8.70 25.60 0.22 -27.03 16 10 H 0.05 2.44 7.81 -2.91 -0.02 2.42 16 11 C 0.03 1.71 5.46 84.66 0.46 2.17 16 12 N -0.91 -45.34 13.29 21.45 0.28 -45.06 16 13 Si 0.94 39.59 29.54 68.60 2.03 41.61 16 14 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 15 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 16 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 17 C 0.12 4.51 5.43 86.38 0.47 4.98 16 18 C -0.11 -3.66 5.46 30.59 0.17 -3.50 16 19 C 0.07 1.82 4.96 86.30 0.43 2.25 16 20 N -0.57 -14.52 5.02 -948.82 -4.76 -19.29 16 21 C 0.02 0.54 9.32 127.69 1.19 1.73 16 22 C 0.03 0.50 9.57 127.69 1.22 1.72 16 23 C -0.27 -10.02 4.90 -20.14 -0.10 -10.12 16 24 C 0.07 2.47 11.70 85.24 1.00 3.47 16 25 N -0.32 -10.91 12.57 -57.03 -0.72 -11.62 16 26 N -0.37 -11.14 4.01 -369.57 -1.48 -12.63 16 27 C 0.09 1.78 11.47 127.77 1.47 3.24 16 28 C 0.08 2.84 10.15 83.54 0.85 3.69 16 29 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 30 H 0.04 1.28 8.09 -2.38 -0.02 1.26 16 31 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.02 1.06 8.03 -2.38 -0.02 1.04 16 33 H 0.05 2.02 3.55 -2.39 -0.01 2.01 16 34 H 0.27 12.80 8.31 -92.71 -0.77 12.03 16 35 H 0.08 2.90 8.07 -2.39 -0.02 2.88 16 36 H 0.07 2.64 7.35 -2.38 -0.02 2.62 16 37 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.06 1.98 6.55 -2.39 -0.02 1.96 16 39 H 0.04 1.10 8.12 -2.39 -0.02 1.08 16 40 H 0.08 2.08 8.06 -2.39 -0.02 2.07 16 41 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.08 1.57 8.12 -2.38 -0.02 1.55 16 43 H 0.06 1.50 6.47 -2.39 -0.02 1.49 16 44 H 0.07 1.33 8.12 -2.39 -0.02 1.32 16 45 H 0.08 1.33 8.12 -2.38 -0.02 1.31 16 46 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.18 6.30 8.06 -2.91 -0.02 6.27 16 48 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 50 H 0.10 1.66 8.14 -2.39 -0.02 1.65 16 51 H 0.19 6.24 6.65 -2.91 -0.02 6.22 16 Total: -1.00 -64.28 416.65 2.86 -61.42 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: 0.90 Total: 30.76 kcal Atomic # 6 Polarization: 17.38 SS G_CDS: 9.67 Total: 27.05 kcal Atomic # 7 Polarization: -107.32 SS G_CDS: -8.72 Total: -116.04 kcal Atomic # 8 Polarization: -43.78 SS G_CDS: -1.03 Total: -44.81 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 2.03 Total: 41.61 kcal Total: -64.28 2.86 -61.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281481167.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.804 kcal (2) G-P(sol) polarization free energy of solvation -64.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds