Wall clock time and date at job start Tue Mar 31 2020 22:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46903 * 111.00034 * 2 1 4 4 C 1.46902 * 110.99932 * 123.95401 * 2 1 3 5 5 C 1.53001 * 109.47182 * 170.00037 * 4 2 1 6 6 C 1.52997 * 109.47128 * 179.97438 * 5 4 2 7 7 N 1.46501 * 109.47204 * 179.97438 * 6 5 4 8 8 C 1.46495 * 120.00151 * 270.00309 * 7 6 5 9 9 C 1.50701 * 109.47040 * 269.99575 * 8 7 6 10 10 H 1.07997 * 119.99799 * 0.02562 * 9 8 7 11 11 C 1.37876 * 119.99861 * 179.97438 * 9 8 7 12 12 N 1.31524 * 119.99831 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 120.00233 * 0.02562 * 11 9 8 14 14 H 1.48504 * 109.47076 * 89.99805 * 13 11 9 15 15 H 1.48505 * 109.46961 * 209.99603 * 13 11 9 16 16 H 1.48495 * 109.47128 * 329.99795 * 13 11 9 17 17 C 1.34780 * 120.00017 * 89.99653 * 7 6 5 18 18 O 1.21281 * 119.99699 * 0.02562 * 17 7 6 19 19 C 1.50700 * 120.00301 * 179.97438 * 17 7 6 20 20 O 1.42899 * 109.47140 * 180.02562 * 19 17 7 21 21 C 1.42903 * 113.99629 * 180.02562 * 20 19 17 22 22 C 1.50701 * 109.46878 * 179.97438 * 21 20 19 23 23 C 1.35318 * 126.12685 * 359.69178 * 22 21 20 24 24 C 1.39867 * 107.91698 * 179.90351 * 23 22 21 25 25 N 1.30835 * 108.20391 * 0.36108 * 24 23 22 26 26 N 1.34942 * 126.12730 * 179.97438 * 22 21 20 27 27 C 1.46504 * 126.03533 * 359.94220 * 26 22 21 28 28 H 1.08993 * 109.47390 * 296.04343 * 1 2 3 29 29 H 1.08997 * 109.47004 * 56.04949 * 1 2 3 30 30 H 1.09001 * 109.47168 * 176.04184 * 1 2 3 31 31 H 1.09000 * 109.47166 * 183.94850 * 3 2 1 32 32 H 1.08991 * 109.47121 * 303.95492 * 3 2 1 33 33 H 1.09004 * 109.46546 * 63.95452 * 3 2 1 34 34 H 1.09001 * 109.47230 * 50.00039 * 4 2 1 35 35 H 1.08997 * 109.47198 * 290.00225 * 4 2 1 36 36 H 1.09001 * 109.47036 * 59.99883 * 5 4 2 37 37 H 1.08997 * 109.47207 * 300.00182 * 5 4 2 38 38 H 1.09001 * 109.47247 * 60.00025 * 6 5 4 39 39 H 1.08997 * 109.47235 * 300.00178 * 6 5 4 40 40 H 1.09000 * 109.47359 * 29.99715 * 8 7 6 41 41 H 1.09001 * 109.47512 * 149.99788 * 8 7 6 42 42 H 0.96996 * 119.99540 * 180.02562 * 12 11 9 43 43 H 1.09007 * 109.46405 * 60.00333 * 19 17 7 44 44 H 1.09004 * 109.47198 * 300.00818 * 19 17 7 45 45 H 1.09002 * 109.47382 * 59.99956 * 21 20 19 46 46 H 1.09001 * 109.46938 * 299.99942 * 21 20 19 47 47 H 1.08002 * 126.03759 * 0.02757 * 23 22 21 48 48 H 1.08001 * 125.89573 * 180.14053 * 24 23 22 49 49 H 1.09004 * 109.46977 * 90.00192 * 27 26 22 50 50 H 1.09004 * 109.47012 * 209.99486 * 27 26 22 51 51 H 1.08994 * 109.47199 * 330.00398 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.5044 -0.9554 0.9704 6 6 4.0528 -1.7526 2.1555 7 7 5.4976 -1.9345 1.9951 8 6 6.0138 -3.1061 1.2832 9 6 6.2356 -4.2308 2.2615 10 1 6.0138 -4.0873 3.3086 11 6 6.7208 -5.4433 1.8194 12 7 6.9139 -6.4251 2.6731 13 14 7.1038 -5.6918 0.0080 14 1 8.5150 -5.3123 -0.2561 15 1 6.8996 -7.1186 -0.3499 16 1 6.2013 -4.8422 -0.8098 17 6 6.3519 -1.0237 2.5024 18 8 5.9245 -0.0539 3.0921 19 6 7.8381 -1.2110 2.3379 20 8 8.5268 -0.1226 2.9569 21 6 9.9500 -0.2034 2.8571 22 6 10.5698 0.9889 3.5393 23 6 9.9021 1.9942 4.1513 24 6 10.8468 2.8946 4.6544 25 7 12.0387 2.4500 4.3484 26 7 11.8899 1.2479 3.6447 27 6 12.9759 0.4184 3.1166 28 1 -0.3634 0.4512 0.9232 29 1 -0.3633 0.5739 -0.8524 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0828 1.3433 -0.0708 32 1 1.5898 1.9163 -0.8524 33 1 1.7043 1.8723 0.9234 34 1 1.5089 -1.7407 1.1756 35 1 1.7975 -0.2248 2.0628 36 1 3.9909 0.0193 0.9323 37 1 3.7024 -1.4965 0.0452 38 1 3.5664 -2.7273 2.1940 39 1 3.8549 -1.2110 3.0805 40 1 5.2933 -3.4187 0.5275 41 1 6.9581 -2.8519 0.8017 42 1 7.2555 -7.2779 2.3621 43 1 8.0852 -1.2414 1.2767 44 1 8.1407 -2.1467 2.8083 45 1 10.2407 -0.2122 1.8066 46 1 10.2966 -1.1183 3.3376 47 1 8.8293 2.0843 4.2378 48 1 10.6298 3.8022 5.1981 49 1 13.2135 0.7344 2.1008 50 1 13.8579 0.5297 3.7474 51 1 12.6643 -0.6261 3.1086 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283917503.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:54 Heat of formation + Delta-G solvation = 11.734168 kcal Electronic energy + Delta-G solvation = -29505.101987 eV Core-core repulsion = 25442.252789 eV Total energy + Delta-G solvation = -4062.849197 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.19914 -39.43410 -37.78041 -37.23962 -35.27346 -33.38825 -32.94759 -31.85047 -31.14342 -28.19014 -28.00507 -27.62956 -26.81442 -26.06642 -25.11311 -22.71050 -22.40781 -21.06747 -20.69918 -19.93550 -18.60327 -17.16819 -17.03596 -16.73118 -16.28951 -16.00188 -15.56877 -15.42119 -15.37872 -14.98009 -14.70866 -14.46463 -14.33342 -13.94296 -13.78329 -13.64887 -13.36243 -12.87002 -12.75736 -12.56195 -12.45539 -12.40384 -12.34525 -12.09321 -11.96269 -11.83008 -11.57753 -11.46611 -11.35166 -11.31243 -10.87048 -10.78826 -10.69583 -10.37232 -10.24370 -9.75942 -9.71277 -9.21717 -9.12760 -8.81008 -8.44884 -8.39868 -7.85381 -6.30266 -4.33246 1.81840 2.33517 2.90017 3.08996 3.18032 3.19865 3.21278 3.28249 3.91089 4.16812 4.18445 4.49335 4.67913 4.96535 4.98154 5.01651 5.05969 5.10196 5.14185 5.21453 5.23081 5.25018 5.29564 5.33575 5.46536 5.52610 5.58820 5.61590 5.70062 5.72298 5.75320 5.79768 5.85198 5.85885 5.94499 6.10281 6.25865 6.32198 6.38783 6.51233 6.59557 6.72011 6.91103 6.98561 7.00890 7.09767 7.29885 7.35082 7.69121 8.01114 8.31058 8.74109 8.84420 9.28384 10.82075 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.007106 B = 0.003320 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3939.606153 B = 8432.121377 C =11686.776142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.549 5.549 3 C 0.022 3.978 4 C 0.058 3.942 5 C -0.130 4.130 6 C 0.124 3.876 7 N -0.588 5.588 8 C 0.206 3.794 9 C -0.546 4.546 10 H 0.080 0.920 11 C 0.078 3.922 12 N -0.888 5.888 13 Si 0.869 3.131 14 H -0.273 1.273 15 H -0.282 1.282 16 H -0.262 1.262 17 C 0.523 3.477 18 O -0.548 6.548 19 C 0.046 3.954 20 O -0.354 6.354 21 C 0.128 3.872 22 C 0.079 3.921 23 C -0.241 4.241 24 C 0.043 3.957 25 N -0.300 5.300 26 N -0.374 5.374 27 C 0.099 3.901 28 H 0.023 0.977 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.025 0.975 34 H 0.076 0.924 35 H 0.035 0.965 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.038 0.962 41 H 0.027 0.973 42 H 0.267 0.733 43 H 0.076 0.924 44 H 0.099 0.901 45 H 0.067 0.933 46 H 0.071 0.929 47 H 0.156 0.844 48 H 0.184 0.816 49 H 0.074 0.926 50 H 0.089 0.911 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.048 11.956 -4.377 12.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.272 5.272 3 C -0.126 4.126 4 C -0.070 4.070 5 C -0.169 4.169 6 C 0.001 3.999 7 N -0.320 5.320 8 C 0.085 3.915 9 C -0.584 4.584 10 H 0.098 0.902 11 C -0.126 4.126 12 N -0.525 5.525 13 Si 0.696 3.304 14 H -0.199 1.199 15 H -0.208 1.208 16 H -0.187 1.187 17 C 0.310 3.690 18 O -0.426 6.426 19 C -0.033 4.033 20 O -0.271 6.271 21 C 0.049 3.951 22 C -0.048 4.048 23 C -0.270 4.270 24 C -0.143 4.143 25 N -0.121 5.121 26 N -0.159 5.159 27 C -0.043 4.043 28 H 0.042 0.958 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.043 0.957 34 H 0.095 0.905 35 H 0.054 0.946 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.056 0.944 41 H 0.045 0.955 42 H 0.077 0.923 43 H 0.094 0.906 44 H 0.117 0.883 45 H 0.085 0.915 46 H 0.089 0.911 47 H 0.174 0.826 48 H 0.201 0.799 49 H 0.092 0.908 50 H 0.108 0.892 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.307 12.288 -4.372 13.245 hybrid contribution -0.688 -0.507 -0.431 0.957 sum 1.619 11.781 -4.803 12.825 Atomic orbital electron populations 1.22367 0.87601 1.02186 1.00197 1.61979 1.07556 1.14006 1.43695 1.22429 1.01441 0.88685 1.00089 1.22078 0.95845 0.98125 0.90973 1.21963 0.93958 1.01207 0.99788 1.21234 0.80407 1.00488 0.97795 1.47772 1.05422 1.23400 1.55360 1.19857 0.94738 0.83749 0.93142 1.21398 1.45234 0.95514 0.96272 0.90226 1.24885 0.94662 0.95632 0.97459 1.69895 1.44371 1.03754 1.34516 0.86954 0.79406 0.78317 0.85758 1.19903 1.20780 1.18672 1.19887 0.87694 0.82525 0.78861 1.90636 1.79039 1.30449 1.42505 1.22354 0.91392 0.91061 0.98469 1.87932 1.15333 1.45524 1.78354 1.20569 0.82592 0.93426 0.98463 1.20605 0.84442 0.98348 1.01359 1.21377 1.01393 0.96248 1.07977 1.23892 0.89943 1.00378 1.00056 1.77327 1.22961 0.96674 1.15181 1.48362 1.04243 1.18771 1.44549 1.21869 0.89160 0.93605 0.99660 0.95820 0.91628 0.91343 0.90880 0.91774 0.95676 0.90529 0.94642 0.91725 0.91021 0.89988 0.90744 0.94376 0.95507 0.92269 0.90611 0.88344 0.91465 0.91066 0.82608 0.79945 0.90764 0.89229 0.89462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.57 60.06 0.57 0.82 16 2 N -0.55 -6.76 5.02 -251.26 -1.26 -8.02 16 3 C 0.02 0.25 9.32 60.07 0.56 0.81 16 4 C 0.06 0.75 4.96 -3.82 -0.02 0.73 16 5 C -0.13 -1.94 5.46 -26.73 -0.15 -2.09 16 6 C 0.12 2.14 5.41 -4.04 -0.02 2.12 16 7 N -0.59 -11.43 2.46 -175.06 -0.43 -11.86 16 8 C 0.21 4.26 4.03 -5.20 -0.02 4.24 16 9 C -0.55 -13.59 9.83 -34.44 -0.34 -13.93 16 10 H 0.08 2.25 8.06 -52.49 -0.42 1.82 16 11 C 0.08 1.99 5.47 -17.82 -0.10 1.89 16 12 N -0.89 -24.77 13.96 55.43 0.77 -24.00 16 13 Si 0.87 18.71 27.47 -169.99 -4.67 14.05 16 14 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 15 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 16 H -0.26 -5.35 6.54 56.52 0.37 -4.98 16 17 C 0.52 10.46 7.75 -10.98 -0.09 10.37 16 18 O -0.55 -12.23 16.08 -14.35 -0.23 -12.46 16 19 C 0.05 0.80 4.97 36.01 0.18 0.98 16 20 O -0.35 -6.02 9.17 -55.14 -0.51 -6.52 16 21 C 0.13 1.70 5.90 36.01 0.21 1.91 16 22 C 0.08 1.12 6.91 -82.26 -0.57 0.55 16 23 C -0.24 -3.55 10.14 -40.01 -0.41 -3.96 16 24 C 0.04 0.56 12.03 -17.37 -0.21 0.35 16 25 N -0.30 -4.29 12.58 30.62 0.39 -3.90 16 26 N -0.37 -4.88 4.01 -63.88 -0.26 -5.14 16 27 C 0.10 0.83 11.27 59.85 0.67 1.51 16 28 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 30 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 31 H 0.07 0.89 6.47 -51.93 -0.34 0.55 16 32 H 0.06 0.63 8.12 -51.93 -0.42 0.20 16 33 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.08 0.94 8.06 -51.93 -0.42 0.52 16 35 H 0.04 0.46 8.12 -51.93 -0.42 0.04 16 36 H 0.06 1.03 6.55 -51.93 -0.34 0.69 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 39 H 0.07 1.32 7.42 -51.93 -0.39 0.94 16 40 H 0.04 0.78 7.13 -51.93 -0.37 0.41 16 41 H 0.03 0.52 5.87 -51.93 -0.30 0.22 16 42 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 43 H 0.08 1.13 7.40 -51.93 -0.38 0.74 16 44 H 0.10 1.75 8.00 -51.93 -0.42 1.34 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.16 2.40 7.85 -52.49 -0.41 1.98 16 48 H 0.18 1.76 8.06 -52.49 -0.42 1.34 16 49 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 50 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 51 H 0.09 0.59 7.79 -51.93 -0.40 0.18 16 LS Contribution 419.04 15.07 6.31 6.31 Total: -1.00 -32.47 419.04 -8.44 -40.91 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -8.85 Total: 4.32 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 0.29 Total: 6.31 kcal Atomic # 7 Polarization: -52.13 SS G_CDS: -0.79 Total: -52.92 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.74 Total: -18.98 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -4.67 Total: 14.05 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -32.47 -8.44 -40.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283917503.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.642 kcal (2) G-P(sol) polarization free energy of solvation -32.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds