Wall clock time and date at job start Tue Mar 31 2020 22:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46903 * 111.00034 * 2 1 4 4 C 1.46902 * 110.99932 * 123.95401 * 2 1 3 5 5 C 1.53001 * 109.47182 * 170.00037 * 4 2 1 6 6 C 1.52997 * 109.47128 * 179.97438 * 5 4 2 7 7 N 1.46501 * 109.47204 * 179.97438 * 6 5 4 8 8 C 1.46495 * 120.00151 * 270.00309 * 7 6 5 9 9 C 1.50701 * 109.47040 * 269.99575 * 8 7 6 10 10 H 1.07997 * 119.99799 * 0.02562 * 9 8 7 11 11 C 1.37876 * 119.99861 * 179.97438 * 9 8 7 12 12 N 1.31524 * 119.99831 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 120.00233 * 0.02562 * 11 9 8 14 14 H 1.48504 * 109.47076 * 89.99805 * 13 11 9 15 15 H 1.48505 * 109.46961 * 209.99603 * 13 11 9 16 16 H 1.48495 * 109.47128 * 329.99795 * 13 11 9 17 17 C 1.34780 * 120.00017 * 89.99653 * 7 6 5 18 18 O 1.21281 * 119.99699 * 0.02562 * 17 7 6 19 19 C 1.50700 * 120.00301 * 179.97438 * 17 7 6 20 20 O 1.42899 * 109.47140 * 180.02562 * 19 17 7 21 21 C 1.42903 * 113.99629 * 180.02562 * 20 19 17 22 22 C 1.50701 * 109.46878 * 179.97438 * 21 20 19 23 23 C 1.35318 * 126.12685 * 359.69178 * 22 21 20 24 24 C 1.39867 * 107.91698 * 179.90351 * 23 22 21 25 25 N 1.30835 * 108.20391 * 0.36108 * 24 23 22 26 26 N 1.34942 * 126.12730 * 179.97438 * 22 21 20 27 27 C 1.46504 * 126.03533 * 359.94220 * 26 22 21 28 28 H 1.08993 * 109.47390 * 296.04343 * 1 2 3 29 29 H 1.08997 * 109.47004 * 56.04949 * 1 2 3 30 30 H 1.09001 * 109.47168 * 176.04184 * 1 2 3 31 31 H 1.09000 * 109.47166 * 183.94850 * 3 2 1 32 32 H 1.08991 * 109.47121 * 303.95492 * 3 2 1 33 33 H 1.09004 * 109.46546 * 63.95452 * 3 2 1 34 34 H 1.09001 * 109.47230 * 50.00039 * 4 2 1 35 35 H 1.08997 * 109.47198 * 290.00225 * 4 2 1 36 36 H 1.09001 * 109.47036 * 59.99883 * 5 4 2 37 37 H 1.08997 * 109.47207 * 300.00182 * 5 4 2 38 38 H 1.09001 * 109.47247 * 60.00025 * 6 5 4 39 39 H 1.08997 * 109.47235 * 300.00178 * 6 5 4 40 40 H 1.09000 * 109.47359 * 29.99715 * 8 7 6 41 41 H 1.09001 * 109.47512 * 149.99788 * 8 7 6 42 42 H 0.96996 * 119.99540 * 180.02562 * 12 11 9 43 43 H 1.09007 * 109.46405 * 60.00333 * 19 17 7 44 44 H 1.09004 * 109.47198 * 300.00818 * 19 17 7 45 45 H 1.09002 * 109.47382 * 59.99956 * 21 20 19 46 46 H 1.09001 * 109.46938 * 299.99942 * 21 20 19 47 47 H 1.08002 * 126.03759 * 0.02757 * 23 22 21 48 48 H 1.08001 * 125.89573 * 180.14053 * 24 23 22 49 49 H 1.09004 * 109.46977 * 90.00192 * 27 26 22 50 50 H 1.09004 * 109.47012 * 209.99486 * 27 26 22 51 51 H 1.08994 * 109.47199 * 330.00398 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.5044 -0.9554 0.9704 6 6 4.0528 -1.7526 2.1555 7 7 5.4976 -1.9345 1.9951 8 6 6.0138 -3.1061 1.2832 9 6 6.2356 -4.2308 2.2615 10 1 6.0138 -4.0873 3.3086 11 6 6.7208 -5.4433 1.8194 12 7 6.9139 -6.4251 2.6731 13 14 7.1038 -5.6918 0.0080 14 1 8.5150 -5.3123 -0.2561 15 1 6.8996 -7.1186 -0.3499 16 1 6.2013 -4.8422 -0.8098 17 6 6.3519 -1.0237 2.5024 18 8 5.9245 -0.0539 3.0921 19 6 7.8381 -1.2110 2.3379 20 8 8.5268 -0.1226 2.9569 21 6 9.9500 -0.2034 2.8571 22 6 10.5698 0.9889 3.5393 23 6 9.9021 1.9942 4.1513 24 6 10.8468 2.8946 4.6544 25 7 12.0387 2.4500 4.3484 26 7 11.8899 1.2479 3.6447 27 6 12.9759 0.4184 3.1166 28 1 -0.3634 0.4512 0.9232 29 1 -0.3633 0.5739 -0.8524 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0828 1.3433 -0.0708 32 1 1.5898 1.9163 -0.8524 33 1 1.7043 1.8723 0.9234 34 1 1.5089 -1.7407 1.1756 35 1 1.7975 -0.2248 2.0628 36 1 3.9909 0.0193 0.9323 37 1 3.7024 -1.4965 0.0452 38 1 3.5664 -2.7273 2.1940 39 1 3.8549 -1.2110 3.0805 40 1 5.2933 -3.4187 0.5275 41 1 6.9581 -2.8519 0.8017 42 1 7.2555 -7.2779 2.3621 43 1 8.0852 -1.2414 1.2767 44 1 8.1407 -2.1467 2.8083 45 1 10.2407 -0.2122 1.8066 46 1 10.2966 -1.1183 3.3376 47 1 8.8293 2.0843 4.2378 48 1 10.6298 3.8022 5.1981 49 1 13.2135 0.7344 2.1008 50 1 13.8579 0.5297 3.7474 51 1 12.6643 -0.6261 3.1086 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283917503.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:53 Heat of formation + Delta-G solvation = -9.582698 kcal Electronic energy + Delta-G solvation = -29506.026355 eV Core-core repulsion = 25442.252789 eV Total energy + Delta-G solvation = -4063.773566 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.21119 -40.95547 -38.88842 -38.41189 -36.87268 -34.72146 -34.28880 -33.27381 -32.22673 -29.82250 -29.39024 -28.48505 -27.66556 -27.16125 -26.29279 -24.45677 -23.62675 -22.07477 -21.78111 -20.96384 -20.08737 -19.05821 -18.35152 -18.00060 -17.47896 -17.31588 -16.76112 -16.54280 -16.48340 -16.13722 -16.01036 -15.78830 -15.35261 -15.24280 -14.91135 -14.82125 -14.59972 -14.36405 -13.91996 -13.80766 -13.61554 -13.48432 -13.28398 -13.23697 -13.17415 -12.95527 -12.91409 -12.60470 -12.58382 -12.43701 -12.37897 -12.20881 -11.95732 -11.74680 -11.66809 -11.50809 -10.98679 -10.79842 -10.65669 -10.20257 -9.49824 -9.47568 -9.33014 -8.26844 -6.35650 0.79176 1.37147 1.43532 1.47924 1.56409 1.65705 1.84081 1.97619 2.37972 2.81048 3.06235 3.07640 3.52945 3.67682 3.77864 3.97564 4.11696 4.13187 4.18035 4.22066 4.25374 4.36016 4.39785 4.41542 4.43655 4.46221 4.50781 4.63475 4.64986 4.66604 4.71087 4.71758 4.77390 4.79002 4.81139 4.90289 5.00187 5.02180 5.13792 5.18478 5.27837 5.45827 5.64380 5.70182 5.90344 6.04173 6.07150 6.11358 6.18947 6.57763 6.67072 6.71699 7.22752 7.33852 8.89242 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.007106 B = 0.003320 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3939.606153 B = 8432.121377 C =11686.776142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.561 5.561 3 C 0.022 3.978 4 C 0.063 3.937 5 C -0.113 4.113 6 C 0.122 3.878 7 N -0.591 5.591 8 C 0.214 3.786 9 C -0.544 4.544 10 H 0.029 0.971 11 C 0.022 3.978 12 N -0.942 5.942 13 Si 0.938 3.062 14 H -0.255 1.255 15 H -0.290 1.290 16 H -0.237 1.237 17 C 0.514 3.486 18 O -0.578 6.578 19 C 0.054 3.946 20 O -0.378 6.378 21 C 0.126 3.874 22 C 0.073 3.927 23 C -0.270 4.270 24 C 0.043 3.957 25 N -0.322 5.322 26 N -0.373 5.373 27 C 0.087 3.913 28 H 0.026 0.974 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.023 0.977 34 H 0.084 0.916 35 H 0.032 0.968 36 H 0.053 0.947 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.062 0.938 40 H 0.050 0.950 41 H 0.053 0.947 42 H 0.268 0.732 43 H 0.107 0.893 44 H 0.090 0.910 45 H 0.097 0.903 46 H 0.085 0.915 47 H 0.140 0.860 48 H 0.210 0.790 49 H 0.092 0.908 50 H 0.098 0.902 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.658 12.352 -7.184 14.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.285 5.285 3 C -0.126 4.126 4 C -0.066 4.066 5 C -0.152 4.152 6 C -0.001 4.001 7 N -0.322 5.322 8 C 0.093 3.907 9 C -0.582 4.582 10 H 0.048 0.952 11 C -0.177 4.177 12 N -0.582 5.582 13 Si 0.761 3.239 14 H -0.180 1.180 15 H -0.216 1.216 16 H -0.160 1.160 17 C 0.302 3.698 18 O -0.459 6.459 19 C -0.025 4.025 20 O -0.295 6.295 21 C 0.048 3.952 22 C -0.055 4.055 23 C -0.299 4.299 24 C -0.142 4.142 25 N -0.144 5.144 26 N -0.158 5.158 27 C -0.053 4.053 28 H 0.045 0.955 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.042 0.958 34 H 0.103 0.897 35 H 0.050 0.950 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.125 0.875 44 H 0.108 0.892 45 H 0.115 0.885 46 H 0.103 0.897 47 H 0.158 0.842 48 H 0.227 0.773 49 H 0.110 0.890 50 H 0.117 0.883 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.923 12.706 -7.188 14.888 hybrid contribution -0.898 -0.627 0.557 1.228 sum 2.026 12.079 -6.631 13.928 Atomic orbital electron populations 1.22432 0.86007 1.02926 1.01001 1.61984 1.09079 1.14343 1.43067 1.22435 1.00780 0.88528 1.00827 1.21990 0.94466 0.98792 0.91330 1.21764 0.95216 0.99927 0.98320 1.21328 0.79653 1.00683 0.98485 1.47864 1.06303 1.22910 1.55093 1.19742 0.96221 0.82586 0.92197 1.21512 1.44638 0.97227 0.94869 0.95240 1.25779 0.94318 0.94984 1.02624 1.70064 1.46237 1.04560 1.37295 0.85852 0.80539 0.78085 0.79454 1.17967 1.21644 1.16034 1.20476 0.89096 0.82043 0.78163 1.90614 1.79819 1.31714 1.43751 1.22263 0.89427 0.90683 1.00172 1.87906 1.17497 1.45381 1.78764 1.20801 0.80584 0.93537 1.00317 1.20782 0.85163 0.98404 1.01127 1.21429 1.01066 0.97710 1.09740 1.24308 0.89217 1.00976 0.99661 1.77276 1.23435 0.97621 1.16050 1.48696 1.04659 1.18588 1.43868 1.22266 0.88364 0.94039 1.00648 0.95514 0.90195 0.90788 0.92089 0.90001 0.95807 0.89735 0.94987 0.92849 0.91020 0.90057 0.91991 0.93164 0.92938 0.92278 0.87504 0.89198 0.88512 0.89714 0.84198 0.77297 0.88952 0.88306 0.87604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.57 127.69 1.22 1.65 16 2 N -0.56 -12.90 5.02 -948.86 -4.76 -17.67 16 3 C 0.02 0.48 9.32 127.69 1.19 1.67 16 4 C 0.06 1.56 4.96 86.30 0.43 1.99 16 5 C -0.11 -3.31 5.46 30.59 0.17 -3.14 16 6 C 0.12 4.22 5.41 86.38 0.47 4.68 16 7 N -0.59 -22.80 2.46 -826.16 -2.03 -24.83 16 8 C 0.21 8.47 4.03 85.63 0.35 8.82 16 9 C -0.54 -27.26 9.83 25.60 0.25 -27.01 16 10 H 0.03 1.73 8.06 -2.91 -0.02 1.71 16 11 C 0.02 1.13 5.47 84.65 0.46 1.59 16 12 N -0.94 -53.59 13.96 21.45 0.30 -53.29 16 13 Si 0.94 36.92 27.47 68.60 1.88 38.81 16 14 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 15 H -0.29 -11.79 7.11 99.48 0.71 -11.09 16 16 H -0.24 -8.34 6.54 99.48 0.65 -7.69 16 17 C 0.51 20.57 7.75 87.66 0.68 21.25 16 18 O -0.58 -26.40 16.08 16.00 0.26 -26.15 16 19 C 0.05 1.79 4.97 71.24 0.35 2.14 16 20 O -0.38 -12.61 9.17 -129.94 -1.19 -13.80 16 21 C 0.13 3.11 5.90 71.24 0.42 3.53 16 22 C 0.07 2.01 6.91 41.41 0.29 2.30 16 23 C -0.27 -8.05 10.14 21.99 0.22 -7.82 16 24 C 0.04 1.12 12.03 85.24 1.02 2.15 16 25 N -0.32 -8.91 12.58 -57.03 -0.72 -9.63 16 26 N -0.37 -9.20 4.01 -356.02 -1.43 -10.63 16 27 C 0.09 1.25 11.27 127.77 1.44 2.70 16 28 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.08 1.19 8.12 -2.39 -0.02 1.17 16 30 H 0.07 1.23 8.12 -2.39 -0.02 1.21 16 31 H 0.06 1.44 6.47 -2.39 -0.02 1.42 16 32 H 0.08 1.44 8.12 -2.39 -0.02 1.42 16 33 H 0.02 0.50 8.14 -2.39 -0.02 0.49 16 34 H 0.08 1.96 8.06 -2.39 -0.02 1.94 16 35 H 0.03 0.82 8.12 -2.39 -0.02 0.80 16 36 H 0.05 1.69 6.55 -2.39 -0.02 1.67 16 37 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.08 2.79 8.07 -2.39 -0.02 2.77 16 39 H 0.06 2.28 7.42 -2.39 -0.02 2.27 16 40 H 0.05 1.91 7.13 -2.39 -0.02 1.89 16 41 H 0.05 1.85 5.87 -2.39 -0.01 1.83 16 42 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 43 H 0.11 2.85 7.40 -2.38 -0.02 2.83 16 44 H 0.09 3.15 8.00 -2.38 -0.02 3.13 16 45 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 47 H 0.14 4.53 7.85 -2.91 -0.02 4.50 16 48 H 0.21 3.89 8.06 -2.91 -0.02 3.86 16 49 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 50 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 51 H 0.11 1.13 7.79 -2.39 -0.02 1.11 16 Total: -1.00 -72.25 419.04 2.11 -70.13 By element: Atomic # 1 Polarization: 29.73 SS G_CDS: 0.84 Total: 30.56 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: 8.96 Total: 16.49 kcal Atomic # 7 Polarization: -107.41 SS G_CDS: -8.64 Total: -116.04 kcal Atomic # 8 Polarization: -39.02 SS G_CDS: -0.93 Total: -39.95 kcal Atomic # 14 Polarization: 36.92 SS G_CDS: 1.88 Total: 38.81 kcal Total: -72.25 2.11 -70.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283917503.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.551 kcal (2) G-P(sol) polarization free energy of solvation -72.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds