Wall clock time and date at job start Tue Mar 31 2020 21:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46874 * 2 1 4 4 C 1.50700 * 109.47054 * 119.99810 * 2 1 3 5 5 O 1.21284 * 120.00003 * 108.58685 * 4 2 1 6 6 N 1.34777 * 119.99947 * 288.59167 * 4 2 1 7 7 C 1.46494 * 120.00143 * 0.02562 * 6 4 2 8 8 C 1.46496 * 119.99571 * 179.97438 * 6 4 2 9 9 C 1.50704 * 109.46966 * 90.00391 * 8 6 4 10 10 H 1.07995 * 120.00121 * 359.97438 * 9 8 6 11 11 C 1.37879 * 119.99765 * 179.97438 * 9 8 6 12 12 N 1.31513 * 120.00439 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99784 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47329 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.46981 * 120.00001 * 13 11 9 16 16 H 1.48497 * 109.47297 * 239.99960 * 13 11 9 17 17 N 1.46902 * 109.47051 * 240.00023 * 2 1 3 18 18 C 1.46852 * 111.00291 * 76.42195 * 17 2 1 19 19 C 1.53138 * 109.45633 * 173.66111 * 18 17 2 20 20 C 1.52563 * 109.31448 * 58.29727 * 19 18 17 21 21 C 1.53639 * 110.29757 * 181.46161 * 20 19 18 22 22 N 1.47194 * 103.66895 * 241.13643 * 21 20 19 23 23 C 1.34024 * 109.14269 * 359.97438 * 22 21 20 24 24 O 1.21593 * 123.06367 * 180.02562 * 23 22 21 25 25 N 1.34119 * 113.87800 * 359.97438 * 23 22 21 26 26 C 1.46494 * 125.51398 * 179.97438 * 25 23 22 27 27 C 1.52569 * 110.44948 * 303.64478 * 20 19 18 28 28 C 1.46853 * 110.99936 * 312.06584 * 17 2 1 29 29 H 1.08993 * 109.47466 * 299.99864 * 1 2 3 30 30 H 1.09001 * 109.47093 * 60.00350 * 1 2 3 31 31 H 1.08999 * 109.47366 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47483 * 89.99919 * 7 6 4 33 33 H 1.08998 * 109.47191 * 210.00096 * 7 6 4 34 34 H 1.09010 * 109.46895 * 329.99974 * 7 6 4 35 35 H 1.09003 * 109.47315 * 209.99790 * 8 6 4 36 36 H 1.08996 * 109.47828 * 329.99702 * 8 6 4 37 37 H 0.96996 * 120.00368 * 179.97438 * 12 11 9 38 38 H 1.08997 * 109.46858 * 293.65865 * 18 17 2 39 39 H 1.09000 * 109.46910 * 53.66981 * 18 17 2 40 40 H 1.08994 * 109.49985 * 298.34133 * 19 18 17 41 41 H 1.08998 * 109.49534 * 178.24360 * 19 18 17 42 42 H 1.08997 * 110.58749 * 359.68425 * 21 20 19 43 43 H 1.09004 * 110.58446 * 122.44239 * 21 20 19 44 44 H 0.96993 * 125.42880 * 180.02562 * 22 21 20 45 45 H 1.08999 * 109.47275 * 181.19951 * 26 25 23 46 46 H 1.09011 * 109.47089 * 301.19371 * 26 25 23 47 47 H 1.08998 * 109.47633 * 61.19129 * 26 25 23 48 48 H 1.08996 * 109.49857 * 296.39905 * 27 20 19 49 49 H 1.09005 * 109.49701 * 176.29668 * 27 20 19 50 50 H 1.09000 * 109.47703 * 306.33218 * 28 17 2 51 51 H 1.09003 * 109.46908 * 66.34447 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.5501 -1.8026 1.1312 6 7 1.9061 -0.1319 2.4413 7 6 1.2801 1.1871 2.5612 8 6 2.3939 -0.8228 3.6374 9 6 3.8311 -0.4434 3.8856 10 1 4.3312 0.2433 3.2188 11 6 4.5075 -0.9730 4.9641 12 7 3.8984 -1.8088 5.7764 13 14 6.2892 -0.5032 5.2713 14 1 6.7390 0.4460 4.2216 15 1 6.4086 0.1407 6.6042 16 1 7.1363 -1.7223 5.2329 17 7 2.0196 -0.6925 -1.1995 18 6 1.8916 0.1598 -2.3884 19 6 2.5537 -0.5303 -3.5845 20 6 1.8944 -1.8871 -3.8126 21 6 2.5666 -2.6157 -4.9864 22 7 1.4763 -2.7859 -5.9604 23 6 0.3524 -2.2549 -5.4593 24 8 -0.7064 -2.2574 -6.0571 25 7 0.5016 -1.7215 -4.2378 26 6 -0.5558 -1.0759 -3.4561 27 6 1.9722 -2.7369 -2.5479 28 6 1.3290 -1.9751 -1.3854 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 0.2067 1.0678 2.7085 33 1 1.7072 1.7158 3.4133 34 1 1.4606 1.7591 1.6510 35 1 1.7883 -0.5337 4.4964 36 1 2.3229 -1.9003 3.4891 37 1 4.3744 -2.1817 6.5349 38 1 0.8363 0.3270 -2.6037 39 1 2.3810 1.1163 -2.2042 40 1 3.6152 -0.6712 -3.3814 41 1 2.4318 0.0875 -4.4742 42 1 3.3659 -2.0065 -5.4084 43 1 2.9523 -3.5837 -4.6664 44 1 1.5579 -3.2147 -6.8266 45 1 -0.1434 -0.7180 -2.5128 46 1 -0.9608 -0.2343 -4.0182 47 1 -1.3502 -1.7949 -3.2559 48 1 3.0160 -2.9452 -2.3132 49 1 1.4402 -3.6750 -2.7066 50 1 1.4103 -2.5671 -0.4738 51 1 0.2777 -1.7927 -1.6079 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331549065.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:11 Heat of formation + Delta-G solvation = -4.888203 kcal Electronic energy + Delta-G solvation = -31784.621631 eV Core-core repulsion = 27721.051634 eV Total energy + Delta-G solvation = -4063.569997 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.95349 -39.84482 -38.22079 -36.43645 -34.81414 -34.37862 -33.11706 -32.47752 -31.14365 -30.05740 -27.77462 -27.66556 -26.42246 -25.92867 -24.24892 -23.57643 -22.56465 -21.64482 -20.85454 -20.03706 -18.38955 -17.25349 -16.72762 -16.45689 -16.32408 -16.14496 -16.03794 -15.14611 -15.09537 -14.76053 -14.58300 -14.42667 -14.20745 -13.98231 -13.85895 -13.65355 -13.26605 -13.03620 -12.92224 -12.81925 -12.72490 -12.26913 -12.19609 -12.10733 -11.99434 -11.59866 -11.55626 -11.24643 -11.15777 -11.07715 -10.87788 -10.79600 -10.65812 -10.56837 -10.21371 -10.15310 -9.60047 -9.49185 -8.85703 -8.73176 -8.44480 -8.06381 -7.62537 -6.04962 -4.09377 2.40266 2.97383 3.29205 3.34841 3.37835 3.43288 3.58941 3.66123 3.99795 4.15262 4.37939 4.45064 4.50223 4.66792 4.89041 4.93617 4.99538 5.08973 5.11113 5.14367 5.17838 5.21970 5.27608 5.29934 5.34494 5.46500 5.51372 5.54171 5.60295 5.69171 5.71107 5.74557 5.80145 5.87620 5.90700 5.97015 6.09223 6.18083 6.22308 6.52191 6.87006 6.91914 7.10444 7.14651 7.31083 7.43358 7.54504 7.91951 8.23039 8.42153 8.42351 8.91068 9.12434 9.55968 11.03123 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.020963 B = 0.002789 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.355862 B =10036.581789 C =10643.471165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.064 3.936 3 H 0.100 0.900 4 C 0.514 3.486 5 O -0.524 6.524 6 N -0.603 5.603 7 C 0.083 3.917 8 C 0.247 3.753 9 C -0.523 4.523 10 H 0.058 0.942 11 C 0.060 3.940 12 N -0.896 5.896 13 Si 0.897 3.103 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.283 1.283 17 N -0.512 5.512 18 C 0.039 3.961 19 C -0.113 4.113 20 C 0.148 3.852 21 C 0.101 3.899 22 N -0.743 5.743 23 C 0.699 3.301 24 O -0.593 6.593 25 N -0.620 5.620 26 C 0.098 3.902 27 C -0.113 4.113 28 C 0.038 3.962 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.031 0.969 36 H 0.043 0.957 37 H 0.262 0.738 38 H 0.047 0.953 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.427 0.573 45 H 0.103 0.897 46 H 0.059 0.941 47 H 0.059 0.941 48 H 0.091 0.909 49 H 0.071 0.929 50 H 0.103 0.897 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.901 4.169 -19.249 20.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.048 4.048 3 H 0.118 0.882 4 C 0.299 3.701 5 O -0.400 6.400 6 N -0.336 5.336 7 C -0.062 4.062 8 C 0.128 3.872 9 C -0.562 4.562 10 H 0.076 0.924 11 C -0.142 4.142 12 N -0.535 5.535 13 Si 0.725 3.275 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.209 1.209 17 N -0.236 5.236 18 C -0.088 4.088 19 C -0.152 4.152 20 C 0.062 3.938 21 C -0.024 4.024 22 N -0.405 5.405 23 C 0.399 3.601 24 O -0.471 6.471 25 N -0.358 5.358 26 C -0.043 4.043 27 C -0.152 4.152 28 C -0.089 4.089 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.097 0.903 40 H 0.109 0.891 41 H 0.090 0.910 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.268 0.732 45 H 0.121 0.879 46 H 0.077 0.923 47 H 0.078 0.922 48 H 0.109 0.891 49 H 0.090 0.910 50 H 0.121 0.879 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.757 3.456 -19.232 20.371 hybrid contribution 0.339 0.369 -0.093 0.510 sum -5.418 3.826 -19.325 20.432 Atomic orbital electron populations 1.22505 0.95865 1.03204 1.03001 1.21683 0.93805 0.98722 0.90634 0.88180 1.19999 0.79879 0.86446 0.83797 1.90624 1.43218 1.20834 1.85330 1.48125 1.58634 1.18515 1.08283 1.21698 0.96699 0.85547 1.02230 1.19267 0.94128 0.93694 0.80146 1.21469 0.96920 1.27315 1.10513 0.92413 1.24937 0.98384 0.94936 0.95900 1.69938 1.36962 1.30848 1.15746 0.86451 0.84797 0.78368 0.77849 1.19790 1.21038 1.20887 1.61698 1.57261 1.03543 1.01094 1.22423 0.99637 0.96686 0.90096 1.21852 1.01150 0.94365 0.97831 1.21036 0.81434 0.96423 0.94940 1.22456 0.90656 1.01290 0.88026 1.45149 1.09812 1.64248 1.21280 1.15964 0.83982 0.78503 0.81624 1.90946 1.27697 1.64977 1.63514 1.47015 1.10070 1.61437 1.17264 1.22101 0.89048 0.97184 0.96009 1.21867 1.03472 0.97510 0.92335 1.22556 0.95173 0.91007 1.00200 0.90682 0.92127 0.91538 0.93755 0.90808 0.92559 0.95127 0.93900 0.92800 0.93498 0.90308 0.89139 0.90969 0.89752 0.89576 0.73176 0.87938 0.92256 0.92222 0.89054 0.91038 0.87923 0.93862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.99 7.75 37.16 0.29 -1.70 16 2 C 0.06 0.86 1.89 -68.86 -0.13 0.73 16 3 H 0.10 1.22 6.49 -51.93 -0.34 0.89 16 4 C 0.51 9.93 6.82 -10.99 -0.07 9.86 16 5 O -0.52 -12.33 13.98 5.55 0.08 -12.25 16 6 N -0.60 -12.09 2.86 -182.96 -0.52 -12.62 16 7 C 0.08 1.21 9.12 59.84 0.55 1.76 16 8 C 0.25 6.28 5.16 -5.19 -0.03 6.25 16 9 C -0.52 -14.58 9.39 -34.44 -0.32 -14.90 16 10 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 11 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 12 N -0.90 -26.33 13.29 55.43 0.74 -25.59 16 13 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 14 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 N -0.51 -6.49 4.30 -227.93 -0.98 -7.47 16 18 C 0.04 0.37 4.91 -3.78 -0.02 0.36 16 19 C -0.11 -0.96 4.90 -26.88 -0.13 -1.09 16 20 C 0.15 1.34 0.87 -131.90 -0.11 1.22 16 21 C 0.10 0.72 7.34 -3.33 -0.02 0.70 16 22 N -0.74 -6.66 6.39 -64.78 -0.41 -7.07 16 23 C 0.70 8.85 8.61 -88.18 -0.76 8.09 16 24 O -0.59 -9.93 17.70 5.28 0.09 -9.84 16 25 N -0.62 -6.66 2.81 -172.81 -0.49 -7.14 16 26 C 0.10 0.97 8.34 59.84 0.50 1.46 16 27 C -0.11 -1.19 4.89 -26.88 -0.13 -1.33 16 28 C 0.04 0.47 3.85 -3.77 -0.01 0.45 16 29 H 0.07 0.77 5.90 -51.93 -0.31 0.46 16 30 H 0.06 0.51 6.37 -51.93 -0.33 0.18 16 31 H 0.07 0.77 6.45 -51.93 -0.34 0.43 16 32 H 0.04 0.55 7.22 -51.93 -0.38 0.18 16 33 H 0.07 1.14 8.07 -51.93 -0.42 0.72 16 34 H 0.06 0.66 6.11 -51.92 -0.32 0.35 16 35 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 36 H 0.04 1.23 7.42 -51.93 -0.39 0.85 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.05 0.42 3.74 -51.93 -0.19 0.22 16 39 H 0.08 0.71 7.94 -51.93 -0.41 0.30 16 40 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.46 7.71 -51.93 -0.40 0.06 16 43 H 0.09 0.53 7.71 -51.93 -0.40 0.13 16 44 H 0.43 3.00 8.96 -40.82 -0.37 2.63 16 45 H 0.10 0.93 1.27 -51.93 -0.07 0.87 16 46 H 0.06 0.57 8.14 -51.92 -0.42 0.14 16 47 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 49 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.10 1.65 5.99 -51.93 -0.31 1.34 16 51 H 0.04 0.49 3.20 -51.93 -0.17 0.32 16 LS Contribution 375.10 15.07 5.65 5.65 Total: -1.00 -35.92 375.10 -9.00 -44.92 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -7.62 Total: 1.35 kcal Atomic # 6 Polarization: 13.97 SS G_CDS: -0.51 Total: 13.46 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: -1.67 Total: -59.89 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: 0.17 Total: -22.09 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.92 -9.00 -44.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331549065.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.030 kcal (2) G-P(sol) polarization free energy of solvation -35.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds