Wall clock time and date at job start Tue Mar 31 2020 21:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46874 * 2 1 4 4 C 1.50700 * 109.47054 * 119.99810 * 2 1 3 5 5 O 1.21284 * 120.00003 * 108.58685 * 4 2 1 6 6 N 1.34777 * 119.99947 * 288.59167 * 4 2 1 7 7 C 1.46494 * 120.00143 * 0.02562 * 6 4 2 8 8 C 1.46496 * 119.99571 * 179.97438 * 6 4 2 9 9 C 1.50704 * 109.46966 * 90.00391 * 8 6 4 10 10 H 1.07995 * 120.00121 * 359.97438 * 9 8 6 11 11 C 1.37879 * 119.99765 * 179.97438 * 9 8 6 12 12 N 1.31513 * 120.00439 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99784 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47329 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.46981 * 120.00001 * 13 11 9 16 16 H 1.48497 * 109.47297 * 239.99960 * 13 11 9 17 17 N 1.46902 * 109.47051 * 240.00023 * 2 1 3 18 18 C 1.46852 * 111.00291 * 76.42195 * 17 2 1 19 19 C 1.53138 * 109.45633 * 173.66111 * 18 17 2 20 20 C 1.52563 * 109.31448 * 58.29727 * 19 18 17 21 21 C 1.53639 * 110.29757 * 181.46161 * 20 19 18 22 22 N 1.47194 * 103.66895 * 241.13643 * 21 20 19 23 23 C 1.34024 * 109.14269 * 359.97438 * 22 21 20 24 24 O 1.21593 * 123.06367 * 180.02562 * 23 22 21 25 25 N 1.34119 * 113.87800 * 359.97438 * 23 22 21 26 26 C 1.46494 * 125.51398 * 179.97438 * 25 23 22 27 27 C 1.52569 * 110.44948 * 303.64478 * 20 19 18 28 28 C 1.46853 * 110.99936 * 312.06584 * 17 2 1 29 29 H 1.08993 * 109.47466 * 299.99864 * 1 2 3 30 30 H 1.09001 * 109.47093 * 60.00350 * 1 2 3 31 31 H 1.08999 * 109.47366 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47483 * 89.99919 * 7 6 4 33 33 H 1.08998 * 109.47191 * 210.00096 * 7 6 4 34 34 H 1.09010 * 109.46895 * 329.99974 * 7 6 4 35 35 H 1.09003 * 109.47315 * 209.99790 * 8 6 4 36 36 H 1.08996 * 109.47828 * 329.99702 * 8 6 4 37 37 H 0.96996 * 120.00368 * 179.97438 * 12 11 9 38 38 H 1.08997 * 109.46858 * 293.65865 * 18 17 2 39 39 H 1.09000 * 109.46910 * 53.66981 * 18 17 2 40 40 H 1.08994 * 109.49985 * 298.34133 * 19 18 17 41 41 H 1.08998 * 109.49534 * 178.24360 * 19 18 17 42 42 H 1.08997 * 110.58749 * 359.68425 * 21 20 19 43 43 H 1.09004 * 110.58446 * 122.44239 * 21 20 19 44 44 H 0.96993 * 125.42880 * 180.02562 * 22 21 20 45 45 H 1.08999 * 109.47275 * 181.19951 * 26 25 23 46 46 H 1.09011 * 109.47089 * 301.19371 * 26 25 23 47 47 H 1.08998 * 109.47633 * 61.19129 * 26 25 23 48 48 H 1.08996 * 109.49857 * 296.39905 * 27 20 19 49 49 H 1.09005 * 109.49701 * 176.29668 * 27 20 19 50 50 H 1.09000 * 109.47703 * 306.33218 * 28 17 2 51 51 H 1.09003 * 109.46908 * 66.34447 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.5501 -1.8026 1.1312 6 7 1.9061 -0.1319 2.4413 7 6 1.2801 1.1871 2.5612 8 6 2.3939 -0.8228 3.6374 9 6 3.8311 -0.4434 3.8856 10 1 4.3312 0.2433 3.2188 11 6 4.5075 -0.9730 4.9641 12 7 3.8984 -1.8088 5.7764 13 14 6.2892 -0.5032 5.2713 14 1 6.7390 0.4460 4.2216 15 1 6.4086 0.1407 6.6042 16 1 7.1363 -1.7223 5.2329 17 7 2.0196 -0.6925 -1.1995 18 6 1.8916 0.1598 -2.3884 19 6 2.5537 -0.5303 -3.5845 20 6 1.8944 -1.8871 -3.8126 21 6 2.5666 -2.6157 -4.9864 22 7 1.4763 -2.7859 -5.9604 23 6 0.3524 -2.2549 -5.4593 24 8 -0.7064 -2.2574 -6.0571 25 7 0.5016 -1.7215 -4.2378 26 6 -0.5558 -1.0759 -3.4561 27 6 1.9722 -2.7369 -2.5479 28 6 1.3290 -1.9751 -1.3854 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 0.2067 1.0678 2.7085 33 1 1.7072 1.7158 3.4133 34 1 1.4606 1.7591 1.6510 35 1 1.7883 -0.5337 4.4964 36 1 2.3229 -1.9003 3.4891 37 1 4.3744 -2.1817 6.5349 38 1 0.8363 0.3270 -2.6037 39 1 2.3810 1.1163 -2.2042 40 1 3.6152 -0.6712 -3.3814 41 1 2.4318 0.0875 -4.4742 42 1 3.3659 -2.0065 -5.4084 43 1 2.9523 -3.5837 -4.6664 44 1 1.5579 -3.2147 -6.8266 45 1 -0.1434 -0.7180 -2.5128 46 1 -0.9608 -0.2343 -4.0182 47 1 -1.3502 -1.7949 -3.2559 48 1 3.0160 -2.9452 -2.3132 49 1 1.4402 -3.6750 -2.7066 50 1 1.4103 -2.5671 -0.4738 51 1 0.2777 -1.7927 -1.6079 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331549065.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:10 Heat of formation + Delta-G solvation = -33.242516 kcal Electronic energy + Delta-G solvation = -31785.851167 eV Core-core repulsion = 27721.051634 eV Total energy + Delta-G solvation = -4064.799533 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.78171 -41.08043 -39.40257 -37.47234 -36.46762 -35.26263 -34.71577 -33.81604 -31.96836 -31.13195 -29.46142 -28.55867 -27.40268 -27.10222 -25.76632 -24.43925 -23.94042 -22.60266 -21.78772 -20.88365 -19.79913 -18.66610 -18.10234 -17.85704 -17.36461 -17.22739 -16.88697 -16.64938 -16.28828 -15.95606 -15.73765 -15.55820 -15.25692 -15.00948 -14.81568 -14.51681 -14.38244 -14.26645 -13.98157 -13.81860 -13.72536 -13.53118 -13.42336 -13.24569 -13.12645 -12.97886 -12.87065 -12.64714 -12.54307 -12.44492 -12.17137 -12.02736 -11.96372 -11.72495 -11.60748 -11.53303 -11.16523 -10.62814 -10.35342 -10.29972 -9.52154 -9.34279 -9.00746 -8.19798 -6.34328 1.37868 1.40215 1.52066 1.62889 1.94904 2.04728 2.30138 2.43396 2.91070 3.02584 3.09686 3.31851 3.65410 3.71137 3.74591 3.90565 4.03717 4.08044 4.18166 4.29370 4.37554 4.41645 4.50126 4.53220 4.57017 4.58177 4.65991 4.72799 4.74504 4.76841 4.83335 4.94935 4.96063 4.97945 5.02684 5.05936 5.14749 5.15895 5.20499 5.26915 5.29536 5.60630 5.68703 5.88884 6.05046 6.10014 6.18983 6.24055 6.48166 6.74843 6.89784 7.32633 7.54536 7.61713 8.87050 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.020963 B = 0.002789 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.355862 B =10036.581789 C =10643.471165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.077 3.923 3 H 0.123 0.877 4 C 0.502 3.498 5 O -0.578 6.578 6 N -0.612 5.612 7 C 0.077 3.923 8 C 0.262 3.738 9 C -0.537 4.537 10 H 0.053 0.947 11 C 0.006 3.994 12 N -0.930 5.930 13 Si 0.967 3.033 14 H -0.266 1.266 15 H -0.271 1.271 16 H -0.283 1.283 17 N -0.529 5.529 18 C 0.038 3.962 19 C -0.109 4.109 20 C 0.149 3.851 21 C 0.102 3.898 22 N -0.732 5.732 23 C 0.689 3.311 24 O -0.641 6.641 25 N -0.618 5.618 26 C 0.096 3.904 27 C -0.108 4.108 28 C 0.043 3.957 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.093 0.907 35 H 0.020 0.980 36 H -0.004 1.004 37 H 0.266 0.734 38 H 0.058 0.942 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.112 0.888 43 H 0.099 0.901 44 H 0.436 0.564 45 H 0.111 0.889 46 H 0.065 0.935 47 H 0.051 0.949 48 H 0.085 0.915 49 H 0.067 0.933 50 H 0.059 0.941 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.084 6.562 -21.073 22.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.035 4.035 3 H 0.141 0.859 4 C 0.290 3.710 5 O -0.457 6.457 6 N -0.344 5.344 7 C -0.065 4.065 8 C 0.140 3.860 9 C -0.575 4.575 10 H 0.071 0.929 11 C -0.193 4.193 12 N -0.571 5.571 13 Si 0.791 3.209 14 H -0.190 1.190 15 H -0.196 1.196 16 H -0.209 1.209 17 N -0.254 5.254 18 C -0.088 4.088 19 C -0.147 4.147 20 C 0.063 3.937 21 C -0.022 4.022 22 N -0.393 5.393 23 C 0.389 3.611 24 O -0.523 6.523 25 N -0.356 5.356 26 C -0.045 4.045 27 C -0.147 4.147 28 C -0.084 4.084 29 H 0.102 0.898 30 H 0.112 0.888 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.112 0.888 35 H 0.038 0.962 36 H 0.014 0.986 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.106 0.894 42 H 0.130 0.870 43 H 0.117 0.883 44 H 0.279 0.721 45 H 0.128 0.872 46 H 0.084 0.916 47 H 0.070 0.930 48 H 0.104 0.896 49 H 0.086 0.914 50 H 0.077 0.923 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.929 5.891 -21.068 22.424 hybrid contribution 0.065 -0.426 0.504 0.663 sum -4.865 5.464 -20.564 21.826 Atomic orbital electron populations 1.22480 0.93470 1.02982 1.05034 1.21580 0.95452 0.98488 0.87965 0.85893 1.21177 0.78717 0.86042 0.85060 1.90598 1.45523 1.23350 1.86258 1.48138 1.58881 1.20268 1.07110 1.21990 0.97712 0.83008 1.03773 1.18688 0.93503 0.91588 0.82200 1.21733 0.98092 1.27213 1.10496 0.92893 1.25856 1.02983 0.94767 0.95660 1.70057 1.38856 1.31836 1.16308 0.85379 0.79067 0.78088 0.78340 1.18982 1.19588 1.20872 1.61615 1.57783 1.03995 1.02022 1.22541 1.00692 0.96679 0.88909 1.21853 1.01137 0.93799 0.97942 1.21095 0.80874 0.96955 0.94738 1.22639 0.90348 1.02373 0.86850 1.45126 1.09233 1.63169 1.21783 1.16244 0.84088 0.78735 0.81992 1.90906 1.29691 1.66921 1.64817 1.47093 1.10836 1.60899 1.16735 1.22153 0.88907 0.97181 0.96288 1.21799 1.02786 0.97516 0.92618 1.22391 0.96191 0.90946 0.98879 0.89835 0.88833 0.92971 0.91119 0.91826 0.88811 0.96182 0.98621 0.92509 0.92394 0.88930 0.88644 0.89355 0.86987 0.88283 0.72129 0.87156 0.91612 0.93033 0.89643 0.91420 0.92295 0.92657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.40 7.75 71.98 0.56 -2.84 16 2 C 0.08 1.93 1.89 44.17 0.08 2.01 16 3 H 0.12 2.53 6.49 -2.39 -0.02 2.52 16 4 C 0.50 19.67 6.82 87.66 0.60 20.27 16 5 O -0.58 -28.63 13.98 -3.04 -0.04 -28.67 16 6 N -0.61 -24.83 2.86 -851.14 -2.43 -27.27 16 7 C 0.08 2.13 9.12 127.77 1.17 3.30 16 8 C 0.26 13.95 5.16 85.64 0.44 14.39 16 9 C -0.54 -30.66 9.39 25.60 0.24 -30.42 16 10 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 11 C 0.01 0.34 5.46 84.66 0.46 0.80 16 12 N -0.93 -56.20 13.29 21.45 0.28 -55.92 16 13 Si 0.97 44.64 29.54 68.60 2.03 46.66 16 14 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 15 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 16 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 17 N -0.53 -12.59 4.30 -875.05 -3.77 -16.36 16 18 C 0.04 0.60 4.91 86.36 0.42 1.03 16 19 C -0.11 -1.48 4.90 30.50 0.15 -1.33 16 20 C 0.15 2.37 0.87 3.52 0.00 2.37 16 21 C 0.10 1.17 7.34 86.46 0.63 1.81 16 22 N -0.73 -11.59 6.39 -477.56 -3.05 -14.64 16 23 C 0.69 16.53 8.61 179.49 1.55 18.08 16 24 O -0.64 -21.24 17.70 -4.01 -0.07 -21.31 16 25 N -0.62 -12.18 2.81 -819.29 -2.30 -14.48 16 26 C 0.10 1.72 8.34 127.77 1.07 2.79 16 27 C -0.11 -2.22 4.89 30.50 0.15 -2.07 16 28 C 0.04 1.07 3.85 86.36 0.33 1.41 16 29 H 0.08 1.44 5.90 -2.39 -0.01 1.43 16 30 H 0.09 1.18 6.37 -2.39 -0.02 1.16 16 31 H 0.05 1.15 6.45 -2.39 -0.02 1.13 16 32 H 0.07 1.59 7.22 -2.39 -0.02 1.57 16 33 H 0.06 1.89 8.07 -2.39 -0.02 1.87 16 34 H 0.09 1.87 6.11 -2.38 -0.01 1.86 16 35 H 0.02 1.09 8.07 -2.39 -0.02 1.07 16 36 H 0.00 -0.27 7.42 -2.39 -0.02 -0.29 16 37 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 38 H 0.06 0.80 3.74 -2.39 -0.01 0.79 16 39 H 0.09 1.26 7.94 -2.39 -0.02 1.24 16 40 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.11 0.76 7.71 -2.39 -0.02 0.74 16 43 H 0.10 0.94 7.71 -2.39 -0.02 0.93 16 44 H 0.44 5.28 8.96 -92.71 -0.83 4.45 16 45 H 0.11 1.75 1.27 -2.39 0.00 1.74 16 46 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 47 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 49 H 0.07 1.41 8.14 -2.38 -0.02 1.40 16 50 H 0.06 2.01 5.99 -2.39 -0.01 2.00 16 51 H 0.06 1.21 3.20 -2.39 -0.01 1.20 16 Total: -1.00 -83.35 375.10 -1.35 -84.71 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 0.14 Total: 15.68 kcal Atomic # 6 Polarization: 23.73 SS G_CDS: 7.85 Total: 31.58 kcal Atomic # 7 Polarization: -117.40 SS G_CDS: -11.26 Total: -128.66 kcal Atomic # 8 Polarization: -49.87 SS G_CDS: -0.11 Total: -49.98 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -83.35 -1.35 -84.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331549065.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.463 kcal (2) G-P(sol) polarization free energy of solvation -83.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds