Wall clock time and date at job start Tue Mar 31 2020 21:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.47147 * 2 1 4 4 C 1.34785 * 119.99838 * 179.72541 * 3 2 1 5 5 O 1.21281 * 119.99610 * 359.97438 * 4 3 2 6 6 C 1.50692 * 119.99720 * 179.97438 * 4 3 2 7 7 N 1.46898 * 109.46920 * 179.97438 * 6 4 3 8 8 C 1.46897 * 111.00237 * 294.29982 * 7 6 4 9 9 C 1.53246 * 109.34021 * 172.74510 * 8 7 6 10 10 N 1.47071 * 108.52002 * 53.83197 * 9 8 7 11 11 C 1.34779 * 120.88163 * 128.79066 * 10 9 8 12 12 O 1.21587 * 120.00004 * 175.03775 * 11 10 9 13 13 N 1.34775 * 120.00075 * 355.04122 * 11 10 9 14 14 C 1.46500 * 120.00578 * 185.05272 * 13 11 10 15 15 C 1.52990 * 109.47287 * 185.00927 * 14 13 11 16 16 C 1.50704 * 115.55138 * 275.56936 * 15 14 13 17 17 H 1.07995 * 119.99704 * 114.79959 * 16 15 14 18 18 C 1.37874 * 119.99954 * 294.79916 * 16 15 14 19 19 N 1.31512 * 120.00109 * 352.05398 * 18 16 15 20 20 Si 1.86797 * 119.99892 * 172.05207 * 18 16 15 21 21 H 1.48505 * 109.46933 * 60.00404 * 20 18 16 22 22 H 1.48504 * 109.47325 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47385 * 300.00184 * 20 18 16 24 24 C 1.53005 * 117.49991 * 129.86362 * 15 14 13 25 25 C 1.52999 * 60.00016 * 252.50857 * 24 15 14 26 26 C 1.47084 * 118.24064 * 308.81796 * 10 9 8 27 27 C 1.46911 * 110.99980 * 169.99858 * 7 6 4 28 28 H 1.09001 * 109.47090 * 300.00277 * 1 2 3 29 29 H 1.09000 * 109.47301 * 59.99981 * 1 2 3 30 30 H 1.08994 * 109.47126 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47090 * 239.99723 * 2 1 3 32 32 H 1.09007 * 109.46945 * 119.99922 * 2 1 3 33 33 H 0.97003 * 120.00071 * 0.02562 * 3 2 1 34 34 H 1.09003 * 109.47640 * 299.99750 * 6 4 3 35 35 H 1.08999 * 109.47642 * 60.00265 * 6 4 3 36 36 H 1.08998 * 109.49464 * 292.70535 * 8 7 6 37 37 H 1.09002 * 109.49201 * 52.78756 * 8 7 6 38 38 H 1.08995 * 109.62556 * 294.12040 * 9 8 7 39 39 H 1.08996 * 109.62470 * 173.54182 * 9 8 7 40 40 H 0.97006 * 119.99773 * 5.05757 * 13 11 10 41 41 H 1.09001 * 109.46967 * 305.01054 * 14 13 11 42 42 H 1.09003 * 109.46647 * 65.00653 * 14 13 11 43 43 H 0.97000 * 120.00061 * 185.00433 * 19 18 16 44 44 H 1.09003 * 117.49675 * 0.02562 * 24 15 14 45 45 H 1.09002 * 117.50065 * 145.01968 * 24 15 14 46 46 H 1.09001 * 117.49518 * 252.50554 * 25 24 15 47 47 H 1.09000 * 117.51686 * 107.48060 * 25 24 15 48 48 H 1.09001 * 109.62459 * 291.46952 * 26 10 9 49 49 H 1.09003 * 109.63029 * 170.89811 * 26 10 9 50 50 H 1.08995 * 109.49298 * 307.21344 * 27 7 6 51 51 H 1.08996 * 109.48846 * 67.27100 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6274 0.0056 5 8 4.1315 0.7055 0.0111 6 6 3.8458 3.0482 0.0050 7 7 5.3148 3.0482 0.0124 8 6 5.8349 2.4866 1.2661 9 6 7.3565 2.3365 1.1622 10 7 7.9289 3.6356 0.7781 11 6 8.9438 4.1789 1.4791 12 8 9.4648 5.2084 1.0958 13 7 9.3811 3.5809 2.6050 14 6 10.4076 4.2272 3.4265 15 6 10.8117 3.2913 4.5673 16 6 9.9331 3.3407 5.7908 17 1 9.3522 2.4754 6.0737 18 6 9.8711 4.4907 6.5489 19 7 10.6913 5.4879 6.2993 20 14 8.6219 4.6322 7.9306 21 1 8.8625 3.5579 8.9273 22 1 8.7591 5.9566 8.5882 23 1 7.2517 4.4943 7.3752 24 6 12.3060 3.0407 4.7798 25 6 11.4220 1.9400 4.1900 26 6 7.3642 4.3266 -0.3911 27 6 5.8425 4.3983 -0.2261 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8901 33 1 1.3880 2.1185 0.0004 34 1 3.4866 3.5603 -0.8877 35 1 3.4785 3.5639 0.8923 36 1 5.5909 3.1540 2.0926 37 1 5.3843 1.5097 1.4417 38 1 7.6000 1.5908 0.4054 39 1 7.7607 2.0290 2.1266 40 1 9.0161 2.7225 2.8714 41 1 11.2798 4.4476 2.8111 42 1 10.0111 5.1544 3.8403 43 1 10.6976 6.2670 6.8772 44 1 13.0012 3.5429 4.1071 45 1 12.6540 2.9116 5.8047 46 1 11.1884 1.0868 4.8269 47 1 11.5352 1.7176 3.1290 48 1 7.6086 3.7722 -1.2973 49 1 7.7737 5.3348 -0.4537 50 1 5.3972 4.8079 -1.1327 51 1 5.5979 5.0392 0.6209 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332173311.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:15 Heat of formation + Delta-G solvation = -19.271587 kcal Electronic energy + Delta-G solvation = -30101.159506 eV Core-core repulsion = 26036.965799 eV Total energy + Delta-G solvation = -4064.193708 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.39794 -39.65180 -37.84372 -36.64569 -35.57577 -34.31312 -33.24783 -32.03012 -31.27149 -30.97894 -28.88133 -26.40152 -25.46877 -24.66027 -23.63909 -23.00676 -21.39871 -21.01288 -20.76016 -19.34331 -18.97186 -17.85216 -17.32863 -16.47532 -16.22022 -16.04261 -15.64762 -15.25498 -15.19332 -14.86716 -14.69551 -14.63165 -14.28499 -13.95073 -13.81562 -13.50962 -13.40378 -13.02673 -12.87745 -12.58444 -12.30945 -12.28538 -12.09132 -11.86253 -11.65677 -11.50034 -11.33671 -11.25390 -11.14948 -10.95247 -10.90878 -10.52716 -10.26694 -9.99556 -9.66335 -9.42663 -9.38741 -9.02215 -8.69276 -8.56971 -8.36257 -8.18886 -7.87636 -6.06380 -4.12876 2.39133 2.70919 3.09356 3.27374 3.33471 3.34632 3.69730 3.85186 4.36002 4.38564 4.46607 4.61326 4.63964 4.78546 4.88631 4.91735 4.95959 5.02257 5.16603 5.25100 5.31133 5.36057 5.37313 5.40678 5.46745 5.49338 5.58597 5.78766 5.85786 5.90594 6.04855 6.08938 6.10319 6.35450 6.51179 6.63408 6.66320 6.68820 6.72971 6.85634 6.95956 7.08588 7.16982 7.36082 7.41503 7.54654 7.58980 7.85997 7.97213 8.37323 8.62037 8.86476 9.22671 9.51505 11.01363 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011735 B = 0.002697 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.458743 B =10378.436980 C =11473.377727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.115 3.885 3 N -0.737 5.737 4 C 0.512 3.488 5 O -0.517 6.517 6 C 0.036 3.964 7 N -0.520 5.520 8 C 0.037 3.963 9 C 0.122 3.878 10 N -0.639 5.639 11 C 0.703 3.297 12 O -0.601 6.601 13 N -0.726 5.726 14 C 0.181 3.819 15 C 0.034 3.966 16 C -0.499 4.499 17 H 0.060 0.940 18 C 0.073 3.927 19 N -0.874 5.874 20 Si 0.891 3.109 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C -0.164 4.164 25 C -0.208 4.208 26 C 0.139 3.861 27 C 0.041 3.959 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.399 0.601 34 H 0.105 0.895 35 H 0.064 0.936 36 H 0.037 0.963 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.393 0.607 41 H 0.039 0.961 42 H 0.076 0.924 43 H 0.263 0.737 44 H 0.065 0.935 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.067 0.933 48 H 0.068 0.932 49 H 0.096 0.904 50 H 0.086 0.914 51 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.962 -6.807 -14.007 25.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.009 4.009 3 N -0.392 5.392 4 C 0.298 3.702 5 O -0.391 6.391 6 C -0.095 4.095 7 N -0.245 5.245 8 C -0.091 4.091 9 C -0.002 4.002 10 N -0.378 5.378 11 C 0.404 3.596 12 O -0.480 6.480 13 N -0.381 5.381 14 C 0.058 3.942 15 C 0.033 3.967 16 C -0.537 4.537 17 H 0.078 0.922 18 C -0.132 4.132 19 N -0.510 5.510 20 Si 0.719 3.281 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.202 4.202 25 C -0.245 4.245 26 C 0.015 3.985 27 C -0.087 4.087 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.233 0.767 34 H 0.123 0.877 35 H 0.082 0.918 36 H 0.055 0.945 37 H 0.119 0.881 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.228 0.772 41 H 0.057 0.943 42 H 0.095 0.905 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.100 0.900 46 H 0.096 0.904 47 H 0.086 0.914 48 H 0.086 0.914 49 H 0.114 0.886 50 H 0.104 0.896 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -18.778 -6.784 -14.586 24.726 hybrid contribution -1.505 0.557 1.653 2.304 sum -20.283 -6.227 -12.934 24.849 Atomic orbital electron populations 1.22007 0.94480 1.03297 1.02488 1.21278 0.94134 0.82964 1.02502 1.46073 1.07191 1.08954 1.76962 1.20607 0.81977 0.91637 0.75977 1.90702 1.54875 1.46093 1.47427 1.21951 0.90341 0.93994 1.03252 1.61632 1.04626 1.22100 1.36123 1.22668 0.95930 1.01363 0.89159 1.21620 0.92016 0.85504 1.01097 1.47322 1.36679 1.22024 1.31765 1.15948 0.79915 0.83256 0.80482 1.90856 1.60252 1.25727 1.71194 1.45480 1.44124 1.24710 1.23769 1.20885 0.87959 0.96516 0.88881 1.19075 0.92365 0.90881 0.94329 1.20384 1.26043 0.98436 1.08827 0.92215 1.24982 0.95466 0.95525 0.97186 1.69957 1.35815 1.07495 1.37694 0.86686 0.82124 0.77263 0.82074 1.20265 1.21252 1.20256 1.22705 0.95478 1.02141 0.99917 1.22880 1.09235 0.93913 0.98509 1.21404 0.90542 0.98970 0.87582 1.22585 0.96332 0.88522 1.01267 0.91962 0.91996 0.90764 0.91478 0.91480 0.76707 0.87745 0.91830 0.94482 0.88055 0.90699 0.89715 0.77158 0.94269 0.90543 0.92723 0.91613 0.90004 0.90428 0.91431 0.91373 0.88555 0.89618 0.94048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.59 10.03 37.16 0.37 -0.22 16 2 C 0.11 0.72 6.39 -4.04 -0.03 0.70 16 3 N -0.74 -4.79 5.56 -60.29 -0.33 -5.13 16 4 C 0.51 4.97 7.49 -10.99 -0.08 4.89 16 5 O -0.52 -7.15 14.33 5.56 0.08 -7.07 16 6 C 0.04 0.30 5.45 -4.98 -0.03 0.27 16 7 N -0.52 -5.83 4.37 -235.76 -1.03 -6.86 16 8 C 0.04 0.47 5.26 -3.70 -0.02 0.45 16 9 C 0.12 1.69 6.59 -3.60 -0.02 1.66 16 10 N -0.64 -10.30 3.01 -178.20 -0.54 -10.83 16 11 C 0.70 14.37 8.31 -86.92 -0.72 13.65 16 12 O -0.60 -14.41 15.80 5.29 0.08 -14.33 16 13 N -0.73 -15.01 5.38 -65.23 -0.35 -15.36 16 14 C 0.18 4.35 5.53 -4.05 -0.02 4.33 16 15 C 0.03 0.83 1.32 -155.66 -0.21 0.62 16 16 C -0.50 -13.14 8.82 -34.44 -0.30 -13.44 16 17 H 0.06 1.55 7.83 -52.49 -0.41 1.14 16 18 C 0.07 1.95 5.22 -17.82 -0.09 1.86 16 19 N -0.87 -24.61 12.60 55.43 0.70 -23.91 16 20 Si 0.89 20.82 29.55 -169.99 -5.02 15.80 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 C -0.16 -3.79 9.88 -26.73 -0.26 -4.05 16 25 C -0.21 -4.37 9.78 -26.73 -0.26 -4.64 16 26 C 0.14 1.88 6.58 -3.60 -0.02 1.85 16 27 C 0.04 0.45 5.62 -3.70 -0.02 0.43 16 28 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.40 1.42 8.47 -40.82 -0.35 1.08 16 34 H 0.10 0.60 7.97 -51.93 -0.41 0.19 16 35 H 0.06 0.46 8.12 -51.93 -0.42 0.04 16 36 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.10 1.34 5.77 -51.93 -0.30 1.04 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.08 1.17 5.63 -51.93 -0.29 0.88 16 40 H 0.39 7.37 5.91 -40.82 -0.24 7.13 16 41 H 0.04 0.96 7.87 -51.93 -0.41 0.56 16 42 H 0.08 2.10 7.27 -51.93 -0.38 1.73 16 43 H 0.26 7.13 8.32 -40.82 -0.34 6.79 16 44 H 0.07 1.46 8.06 -51.93 -0.42 1.04 16 45 H 0.08 1.95 8.14 -51.93 -0.42 1.53 16 46 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 47 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 48 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.10 1.42 7.09 -51.93 -0.37 1.05 16 50 H 0.09 0.69 7.99 -51.93 -0.41 0.28 16 51 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 408.18 15.07 6.15 6.15 Total: -1.00 -33.73 408.18 -10.61 -44.34 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -8.62 Total: 8.85 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: -1.72 Total: 8.36 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: -1.55 Total: -62.10 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: 0.16 Total: -21.40 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.73 -10.61 -44.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332173311.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.064 kcal (2) G-P(sol) polarization free energy of solvation -33.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds