Wall clock time and date at job start Tue Mar 31 2020 21:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47281 * 2 1 4 4 C 1.50703 * 109.47213 * 119.99493 * 2 1 3 5 5 O 1.21280 * 120.00016 * 108.31307 * 4 2 1 6 6 N 1.34778 * 120.00196 * 288.31062 * 4 2 1 7 7 C 1.46495 * 120.00316 * 179.97438 * 6 4 2 8 8 C 1.53001 * 117.50042 * 223.62551 * 7 6 4 9 9 C 1.53001 * 60.00016 * 252.50701 * 8 7 6 10 10 N 1.46891 * 109.47103 * 239.99587 * 2 1 3 11 11 C 1.46902 * 111.00104 * 77.09695 * 10 2 1 12 12 C 1.53242 * 109.33906 * 172.74355 * 11 10 2 13 13 N 1.47075 * 108.51945 * 53.83356 * 12 11 10 14 14 C 1.34781 * 120.88058 * 128.83497 * 13 12 11 15 15 O 1.21592 * 119.99611 * 185.38907 * 14 13 12 16 16 N 1.34769 * 120.00198 * 5.38806 * 14 13 12 17 17 C 1.46502 * 120.00189 * 185.27464 * 16 14 13 18 18 C 1.52999 * 109.47178 * 179.97438 * 17 16 14 19 19 C 1.50698 * 109.47107 * 180.02562 * 18 17 16 20 20 H 1.08002 * 119.99957 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99971 * 179.97438 * 19 18 17 22 22 N 1.31519 * 120.00109 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99831 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47244 * 60.00365 * 23 21 19 25 25 H 1.48504 * 109.46875 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47202 * 300.00042 * 23 21 19 27 27 C 1.47076 * 118.24025 * 308.81114 * 13 12 11 28 28 C 1.46900 * 111.00322 * 312.79433 * 10 2 1 29 29 H 1.09005 * 109.47063 * 300.00309 * 1 2 3 30 30 H 1.09000 * 109.47116 * 60.00327 * 1 2 3 31 31 H 1.08999 * 109.47084 * 180.02562 * 1 2 3 32 32 H 0.97005 * 119.99736 * 0.02562 * 6 4 2 33 33 H 1.08999 * 115.54724 * 9.32995 * 7 6 4 34 34 H 1.08999 * 117.50170 * 359.97438 * 8 7 6 35 35 H 1.09002 * 117.49682 * 145.02531 * 8 7 6 36 36 H 1.09001 * 117.50136 * 252.51094 * 9 8 7 37 37 H 1.09005 * 117.51870 * 107.47921 * 9 8 7 38 38 H 1.08998 * 109.49444 * 292.71088 * 11 10 2 39 39 H 1.08999 * 109.49058 * 52.78844 * 11 10 2 40 40 H 1.08993 * 109.63232 * 294.11928 * 12 11 10 41 41 H 1.09001 * 109.62695 * 173.53975 * 12 11 10 42 42 H 0.97001 * 119.99706 * 5.27156 * 16 14 13 43 43 H 1.08993 * 109.47083 * 299.99969 * 17 16 14 44 44 H 1.09004 * 109.46549 * 60.00279 * 17 16 14 45 45 H 1.09007 * 109.47177 * 300.00095 * 18 17 16 46 46 H 1.09001 * 109.47457 * 60.00003 * 18 17 16 47 47 H 0.96995 * 120.00040 * 179.97438 * 22 21 19 48 48 H 1.09003 * 109.62906 * 291.48080 * 27 13 12 49 49 H 1.08996 * 109.63467 * 170.89785 * 27 13 12 50 50 H 1.09001 * 109.49125 * 307.21855 * 28 10 2 51 51 H 1.09002 * 109.49111 * 67.29369 * 28 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.5456 -1.8047 1.1319 6 7 1.9113 -0.1294 2.4407 7 6 2.3991 -0.8201 3.6369 8 6 1.5053 -0.7993 4.8785 9 6 2.7837 0.0404 4.8421 10 7 2.0196 -0.6925 -1.1993 11 6 1.9064 0.1659 -2.3860 12 6 2.5897 -0.5187 -3.5746 13 7 2.0226 -1.8673 -3.7262 14 6 1.5586 -2.2927 -4.9180 15 8 1.0045 -3.3715 -5.0046 16 7 1.7088 -1.5223 -6.0135 17 6 1.1044 -1.9300 -7.2842 18 6 1.4227 -0.8877 -8.3581 19 6 0.8003 -1.3068 -9.6650 20 1 0.2340 -2.2246 -9.7237 21 6 0.9530 -0.5181 -10.7855 22 7 1.6422 0.5998 -10.7139 23 14 0.1810 -1.0372 -12.4054 24 1 -1.2908 -1.1448 -12.2403 25 1 0.4901 -0.0256 -13.4477 26 1 0.7306 -2.3542 -12.8161 27 6 1.9757 -2.7395 -2.5429 28 6 1.3167 -1.9675 -1.3949 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.5004 0.7458 2.5196 33 1 2.9856 -1.7203 3.4536 34 1 0.5545 -0.2714 4.8055 35 1 1.5037 -1.6862 5.5123 36 1 3.6231 -0.2939 5.4519 37 1 2.6742 1.1206 4.7448 38 1 0.8539 0.3304 -2.6168 39 1 2.3901 1.1228 -2.1902 40 1 3.6613 -0.5908 -3.3892 41 1 2.4103 0.0580 -4.4820 42 1 2.2171 -0.6979 -5.9607 43 1 1.5079 -2.8968 -7.5848 44 1 0.0239 -2.0088 -7.1638 45 1 1.0187 0.0790 -8.0572 46 1 2.5031 -0.8084 -8.4786 47 1 1.7499 1.1545 -11.5023 48 1 2.9884 -3.0251 -2.2582 49 1 1.3905 -3.6311 -2.7681 50 1 1.3727 -2.5578 -0.4802 51 1 0.2724 -1.7733 -1.6395 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344014501.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:02 Heat of formation + Delta-G solvation = -21.515135 kcal Electronic energy + Delta-G solvation = -29491.867724 eV Core-core repulsion = 25427.576729 eV Total energy + Delta-G solvation = -4064.290995 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.80455 -39.87188 -38.37296 -37.22661 -35.09668 -34.77472 -33.36277 -32.82293 -31.25454 -30.87632 -29.28362 -26.88855 -25.14216 -24.52101 -23.72939 -22.92692 -22.29654 -21.37512 -20.97124 -20.46212 -19.11960 -17.88470 -17.56902 -17.04223 -16.40474 -15.85634 -15.75488 -15.47076 -15.42348 -15.05868 -14.86985 -14.65942 -14.46476 -14.24913 -13.89235 -13.66588 -13.45260 -13.25170 -12.97397 -12.82629 -12.53043 -12.29290 -12.19338 -12.15328 -12.10948 -11.83254 -11.49453 -11.27418 -11.12611 -11.07971 -11.03639 -10.99740 -10.62682 -10.28918 -10.06385 -9.82117 -9.50300 -9.24916 -9.21543 -8.80913 -8.53766 -8.40396 -8.10970 -6.07247 -4.09718 2.21973 2.48912 2.94240 3.32998 3.36502 3.39220 3.40383 3.54142 3.67519 4.19727 4.25184 4.27195 4.40625 4.45340 4.46069 4.49950 4.57420 4.78335 4.91197 4.98994 5.04944 5.08521 5.12539 5.23270 5.27124 5.29780 5.32257 5.42008 5.48448 5.52713 5.56492 5.60638 5.74999 5.83867 6.03738 6.05134 6.28953 6.43389 6.54959 6.64051 6.77142 6.80683 7.04841 7.05869 7.26603 7.58271 7.65646 7.86620 7.91890 8.27821 8.42220 8.94808 9.03414 9.54815 11.04363 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.033939 B = 0.001754 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.813068 B =15964.112100 C =16303.637900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.066 3.934 3 H 0.106 0.894 4 C 0.526 3.474 5 O -0.515 6.515 6 N -0.706 5.706 7 C 0.082 3.918 8 C -0.195 4.195 9 C -0.190 4.190 10 N -0.515 5.515 11 C 0.042 3.958 12 C 0.117 3.883 13 N -0.637 5.637 14 C 0.703 3.297 15 O -0.597 6.597 16 N -0.739 5.739 17 C 0.139 3.861 18 C 0.013 3.987 19 C -0.521 4.521 20 H 0.059 0.941 21 C 0.059 3.941 22 N -0.895 5.895 23 Si 0.897 3.103 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.276 1.276 27 C 0.138 3.862 28 C 0.039 3.961 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.400 0.600 33 H 0.138 0.862 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.044 0.956 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.392 0.608 43 H 0.055 0.945 44 H 0.052 0.948 45 H 0.021 0.979 46 H 0.022 0.978 47 H 0.262 0.738 48 H 0.070 0.930 49 H 0.095 0.905 50 H 0.100 0.900 51 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.168 4.656 32.282 32.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.046 4.046 3 H 0.124 0.876 4 C 0.312 3.688 5 O -0.388 6.388 6 N -0.358 5.358 7 C -0.024 4.024 8 C -0.233 4.233 9 C -0.228 4.228 10 N -0.239 5.239 11 C -0.087 4.087 12 C -0.007 4.007 13 N -0.377 5.377 14 C 0.404 3.596 15 O -0.475 6.475 16 N -0.395 5.395 17 C 0.016 3.984 18 C -0.024 4.024 19 C -0.560 4.560 20 H 0.077 0.923 21 C -0.143 4.143 22 N -0.534 5.534 23 Si 0.725 3.275 24 H -0.201 1.201 25 H -0.213 1.213 26 H -0.201 1.201 27 C 0.015 3.985 28 C -0.089 4.089 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.234 0.766 33 H 0.156 0.844 34 H 0.115 0.885 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.115 0.885 38 H 0.062 0.938 39 H 0.105 0.895 40 H 0.093 0.907 41 H 0.104 0.896 42 H 0.227 0.773 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.039 0.961 46 H 0.040 0.960 47 H 0.072 0.928 48 H 0.088 0.912 49 H 0.114 0.886 50 H 0.118 0.882 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 1.675 3.079 31.997 32.188 hybrid contribution -1.181 1.097 -0.820 1.809 sum 0.493 4.176 31.176 31.459 Atomic orbital electron populations 1.22408 0.94733 1.03693 1.03306 1.21601 0.94517 0.98634 0.89896 0.87595 1.20522 0.78261 0.86207 0.83822 1.90687 1.42178 1.20186 1.85773 1.45391 1.62675 1.22000 1.05706 1.21586 1.01498 0.99015 0.80290 1.23431 0.95327 1.03060 1.01515 1.23378 0.99431 0.98596 1.01426 1.61784 1.56482 1.04281 1.01340 1.22545 0.99989 0.96162 0.90001 1.21660 0.98310 0.83193 0.97519 1.47348 1.66261 1.15534 1.08530 1.15973 0.79265 0.84051 0.80270 1.90871 1.49372 1.22361 1.84941 1.45677 1.57922 1.26252 1.09614 1.21589 0.96496 0.99686 0.80583 1.19317 0.97593 0.93458 0.92032 1.21021 1.33471 1.07652 0.93811 0.92275 1.24989 0.95224 0.94880 0.99163 1.69946 1.40477 1.13055 1.29884 0.86568 0.79775 0.78321 0.82837 1.20146 1.21273 1.20103 1.21463 1.01493 0.93219 0.82365 1.22698 0.95387 0.90709 1.00149 0.91549 0.90970 0.91187 0.76567 0.84413 0.88539 0.87976 0.87845 0.88471 0.93796 0.89453 0.90652 0.89565 0.77292 0.92691 0.92964 0.96068 0.95954 0.92843 0.91185 0.88639 0.88218 0.94206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.14 8.30 37.16 0.31 -0.83 16 2 C 0.07 0.48 2.69 -68.87 -0.19 0.29 16 3 H 0.11 0.55 7.83 -51.93 -0.41 0.14 16 4 C 0.53 4.61 6.93 -10.98 -0.08 4.54 16 5 O -0.51 -6.57 14.02 5.56 0.08 -6.49 16 6 N -0.71 -4.15 5.57 -53.81 -0.30 -4.45 16 7 C 0.08 0.50 6.43 -67.93 -0.44 0.06 16 8 C -0.19 -0.85 10.46 -26.73 -0.28 -1.13 16 9 C -0.19 -0.77 10.46 -26.73 -0.28 -1.05 16 10 N -0.51 -5.06 4.28 -227.74 -0.98 -6.03 16 11 C 0.04 0.38 5.37 -3.70 -0.02 0.36 16 12 C 0.12 1.30 6.48 -3.60 -0.02 1.28 16 13 N -0.64 -9.29 3.01 -178.20 -0.54 -9.83 16 14 C 0.70 13.19 8.30 -86.92 -0.72 12.46 16 15 O -0.60 -13.46 15.81 5.28 0.08 -13.38 16 16 N -0.74 -13.75 5.41 -65.23 -0.35 -14.10 16 17 C 0.14 3.08 5.62 -4.04 -0.02 3.06 16 18 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 19 C -0.52 -14.59 9.11 -34.44 -0.31 -14.91 16 20 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 21 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 22 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 23 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 C 0.14 1.86 6.61 -3.60 -0.02 1.84 16 28 C 0.04 0.44 4.23 -3.70 -0.02 0.42 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.47 7.15 -51.93 -0.37 0.10 16 31 H 0.07 0.54 6.48 -51.93 -0.34 0.21 16 32 H 0.40 1.26 8.83 -40.82 -0.36 0.90 16 33 H 0.14 1.08 7.40 -51.93 -0.38 0.69 16 34 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.04 0.42 7.22 -51.93 -0.37 0.05 16 39 H 0.09 0.60 7.92 -51.93 -0.41 0.18 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.09 0.91 5.86 -51.93 -0.30 0.61 16 42 H 0.39 6.33 6.13 -40.82 -0.25 6.08 16 43 H 0.05 1.28 8.14 -51.93 -0.42 0.85 16 44 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 48 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 49 H 0.10 1.43 7.04 -51.93 -0.37 1.06 16 50 H 0.10 1.19 6.05 -51.93 -0.31 0.88 16 51 H 0.04 0.46 6.69 -51.93 -0.35 0.12 16 LS Contribution 403.99 15.07 6.09 6.09 Total: -1.00 -35.07 403.99 -10.95 -46.02 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -8.42 Total: 2.95 kcal Atomic # 6 Polarization: 10.49 SS G_CDS: -2.33 Total: 8.16 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: -1.43 Total: -59.83 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: 0.16 Total: -19.87 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.07 -10.95 -46.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344014501.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.503 kcal (2) G-P(sol) polarization free energy of solvation -35.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds