Wall clock time and date at job start Tue Mar 31 2020 21:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47281 * 2 1 4 4 C 1.50703 * 109.47213 * 119.99493 * 2 1 3 5 5 O 1.21280 * 120.00016 * 108.31307 * 4 2 1 6 6 N 1.34778 * 120.00196 * 288.31062 * 4 2 1 7 7 C 1.46495 * 120.00316 * 179.97438 * 6 4 2 8 8 C 1.53001 * 117.50042 * 223.62551 * 7 6 4 9 9 C 1.53001 * 60.00016 * 252.50701 * 8 7 6 10 10 N 1.46891 * 109.47103 * 239.99587 * 2 1 3 11 11 C 1.46902 * 111.00104 * 77.09695 * 10 2 1 12 12 C 1.53242 * 109.33906 * 172.74355 * 11 10 2 13 13 N 1.47075 * 108.51945 * 53.83356 * 12 11 10 14 14 C 1.34781 * 120.88058 * 128.83497 * 13 12 11 15 15 O 1.21592 * 119.99611 * 185.38907 * 14 13 12 16 16 N 1.34769 * 120.00198 * 5.38806 * 14 13 12 17 17 C 1.46502 * 120.00189 * 185.27464 * 16 14 13 18 18 C 1.52999 * 109.47178 * 179.97438 * 17 16 14 19 19 C 1.50698 * 109.47107 * 180.02562 * 18 17 16 20 20 H 1.08002 * 119.99957 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99971 * 179.97438 * 19 18 17 22 22 N 1.31519 * 120.00109 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99831 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47244 * 60.00365 * 23 21 19 25 25 H 1.48504 * 109.46875 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47202 * 300.00042 * 23 21 19 27 27 C 1.47076 * 118.24025 * 308.81114 * 13 12 11 28 28 C 1.46900 * 111.00322 * 312.79433 * 10 2 1 29 29 H 1.09005 * 109.47063 * 300.00309 * 1 2 3 30 30 H 1.09000 * 109.47116 * 60.00327 * 1 2 3 31 31 H 1.08999 * 109.47084 * 180.02562 * 1 2 3 32 32 H 0.97005 * 119.99736 * 0.02562 * 6 4 2 33 33 H 1.08999 * 115.54724 * 9.32995 * 7 6 4 34 34 H 1.08999 * 117.50170 * 359.97438 * 8 7 6 35 35 H 1.09002 * 117.49682 * 145.02531 * 8 7 6 36 36 H 1.09001 * 117.50136 * 252.51094 * 9 8 7 37 37 H 1.09005 * 117.51870 * 107.47921 * 9 8 7 38 38 H 1.08998 * 109.49444 * 292.71088 * 11 10 2 39 39 H 1.08999 * 109.49058 * 52.78844 * 11 10 2 40 40 H 1.08993 * 109.63232 * 294.11928 * 12 11 10 41 41 H 1.09001 * 109.62695 * 173.53975 * 12 11 10 42 42 H 0.97001 * 119.99706 * 5.27156 * 16 14 13 43 43 H 1.08993 * 109.47083 * 299.99969 * 17 16 14 44 44 H 1.09004 * 109.46549 * 60.00279 * 17 16 14 45 45 H 1.09007 * 109.47177 * 300.00095 * 18 17 16 46 46 H 1.09001 * 109.47457 * 60.00003 * 18 17 16 47 47 H 0.96995 * 120.00040 * 179.97438 * 22 21 19 48 48 H 1.09003 * 109.62906 * 291.48080 * 27 13 12 49 49 H 1.08996 * 109.63467 * 170.89785 * 27 13 12 50 50 H 1.09001 * 109.49125 * 307.21855 * 28 10 2 51 51 H 1.09002 * 109.49111 * 67.29369 * 28 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.5456 -1.8047 1.1319 6 7 1.9113 -0.1294 2.4407 7 6 2.3991 -0.8201 3.6369 8 6 1.5053 -0.7993 4.8785 9 6 2.7837 0.0404 4.8421 10 7 2.0196 -0.6925 -1.1993 11 6 1.9064 0.1659 -2.3860 12 6 2.5897 -0.5187 -3.5746 13 7 2.0226 -1.8673 -3.7262 14 6 1.5586 -2.2927 -4.9180 15 8 1.0045 -3.3715 -5.0046 16 7 1.7088 -1.5223 -6.0135 17 6 1.1044 -1.9300 -7.2842 18 6 1.4227 -0.8877 -8.3581 19 6 0.8003 -1.3068 -9.6650 20 1 0.2340 -2.2246 -9.7237 21 6 0.9530 -0.5181 -10.7855 22 7 1.6422 0.5998 -10.7139 23 14 0.1810 -1.0372 -12.4054 24 1 -1.2908 -1.1448 -12.2403 25 1 0.4901 -0.0256 -13.4477 26 1 0.7306 -2.3542 -12.8161 27 6 1.9757 -2.7395 -2.5429 28 6 1.3167 -1.9675 -1.3949 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.5004 0.7458 2.5196 33 1 2.9856 -1.7203 3.4536 34 1 0.5545 -0.2714 4.8055 35 1 1.5037 -1.6862 5.5123 36 1 3.6231 -0.2939 5.4519 37 1 2.6742 1.1206 4.7448 38 1 0.8539 0.3304 -2.6168 39 1 2.3901 1.1228 -2.1902 40 1 3.6613 -0.5908 -3.3892 41 1 2.4103 0.0580 -4.4820 42 1 2.2171 -0.6979 -5.9607 43 1 1.5079 -2.8968 -7.5848 44 1 0.0239 -2.0088 -7.1638 45 1 1.0187 0.0790 -8.0572 46 1 2.5031 -0.8084 -8.4786 47 1 1.7499 1.1545 -11.5023 48 1 2.9884 -3.0251 -2.2582 49 1 1.3905 -3.6311 -2.7681 50 1 1.3727 -2.5578 -0.4802 51 1 0.2724 -1.7733 -1.6395 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344014501.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:02 Heat of formation + Delta-G solvation = -47.448063 kcal Electronic energy + Delta-G solvation = -29492.992260 eV Core-core repulsion = 25427.576729 eV Total energy + Delta-G solvation = -4065.415531 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.69665 -40.96545 -39.24894 -37.87355 -36.66487 -36.03666 -34.83332 -33.94782 -32.34212 -31.84208 -30.87168 -27.86616 -26.62550 -25.54461 -24.79360 -23.25148 -23.17024 -22.79903 -22.07497 -21.31426 -20.38016 -19.08728 -18.49953 -18.19131 -17.62464 -17.15688 -16.84454 -16.55898 -16.40977 -16.17467 -15.80866 -15.71775 -15.39435 -15.31752 -15.22349 -14.88791 -14.70141 -14.26516 -14.13526 -13.70830 -13.49316 -13.40315 -13.20577 -13.02637 -12.91551 -12.84648 -12.56500 -12.51102 -12.40343 -12.24019 -12.22701 -12.10606 -11.96633 -11.65622 -11.47194 -11.43876 -11.17239 -10.73698 -10.58671 -10.19828 -9.71509 -9.62272 -9.23716 -8.22556 -6.32736 1.42740 1.45308 1.52537 1.57885 1.63546 1.97528 2.10290 2.41883 2.87225 2.99502 3.02188 3.12112 3.64930 3.78223 3.85099 3.96324 4.02386 4.04223 4.08534 4.10066 4.20562 4.22886 4.35586 4.47628 4.51965 4.53117 4.60644 4.71129 4.73549 4.78718 4.80763 4.83900 4.86667 4.90516 5.00488 5.05055 5.15234 5.22654 5.30311 5.45258 5.52565 5.56571 5.59935 5.76273 5.82002 5.95802 6.01659 6.18390 6.58011 6.79438 6.97263 7.30088 7.36227 7.53314 8.89021 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.033939 B = 0.001754 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.813068 B =15964.112100 C =16303.637900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.069 3.931 3 H 0.138 0.862 4 C 0.522 3.478 5 O -0.564 6.564 6 N -0.690 5.690 7 C 0.055 3.945 8 C -0.187 4.187 9 C -0.173 4.173 10 N -0.525 5.525 11 C 0.047 3.953 12 C 0.109 3.891 13 N -0.629 5.629 14 C 0.700 3.300 15 O -0.640 6.640 16 N -0.732 5.732 17 C 0.160 3.840 18 C 0.026 3.974 19 C -0.548 4.548 20 H 0.058 0.942 21 C 0.009 3.991 22 N -0.924 5.924 23 Si 0.964 3.036 24 H -0.269 1.269 25 H -0.280 1.280 26 H -0.270 1.270 27 C 0.138 3.862 28 C 0.055 3.945 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.416 0.584 33 H 0.113 0.887 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.041 0.959 39 H 0.121 0.879 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.405 0.595 43 H 0.041 0.959 44 H 0.043 0.957 45 H 0.011 0.989 46 H 0.008 0.992 47 H 0.266 0.734 48 H 0.071 0.929 49 H 0.075 0.925 50 H 0.092 0.908 51 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.838 6.802 33.501 34.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.043 4.043 3 H 0.156 0.844 4 C 0.309 3.691 5 O -0.441 6.441 6 N -0.342 5.342 7 C -0.051 4.051 8 C -0.225 4.225 9 C -0.212 4.212 10 N -0.250 5.250 11 C -0.081 4.081 12 C -0.013 4.013 13 N -0.366 5.366 14 C 0.402 3.598 15 O -0.522 6.522 16 N -0.389 5.389 17 C 0.036 3.964 18 C -0.012 4.012 19 C -0.587 4.587 20 H 0.076 0.924 21 C -0.190 4.190 22 N -0.564 5.564 23 Si 0.789 3.211 24 H -0.194 1.194 25 H -0.205 1.205 26 H -0.195 1.195 27 C 0.014 3.986 28 C -0.074 4.074 29 H 0.110 0.890 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.253 0.747 33 H 0.130 0.870 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.126 0.874 37 H 0.130 0.870 38 H 0.060 0.940 39 H 0.139 0.861 40 H 0.104 0.896 41 H 0.110 0.890 42 H 0.243 0.757 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.030 0.970 46 H 0.026 0.974 47 H 0.075 0.925 48 H 0.090 0.910 49 H 0.093 0.907 50 H 0.110 0.890 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 1.358 5.303 33.293 33.740 hybrid contribution -1.022 0.459 -1.067 1.547 sum 0.336 5.761 32.226 32.739 Atomic orbital electron populations 1.22359 0.93764 1.02815 1.04617 1.21708 0.95162 0.99443 0.87951 0.84446 1.20844 0.77671 0.85685 0.84916 1.90673 1.44661 1.22307 1.86500 1.45236 1.61696 1.22357 1.04891 1.21557 1.03135 0.99360 0.81024 1.23482 0.95877 1.03338 0.99838 1.23447 0.99299 0.99142 0.99268 1.61713 1.56663 1.04018 1.02572 1.22563 0.99960 0.96901 0.88698 1.21974 0.99041 0.81299 0.99034 1.47377 1.65055 1.17008 1.07188 1.16085 0.79183 0.83402 0.81175 1.90838 1.51333 1.24245 1.85777 1.45358 1.58033 1.26876 1.08610 1.21092 0.95983 0.98018 0.81341 1.19115 0.96262 0.93622 0.92193 1.21425 1.33999 1.07923 0.95341 0.92412 1.25839 0.95564 0.94804 1.02749 1.70045 1.41335 1.13942 1.31048 0.85510 0.79075 0.78133 0.78387 1.19357 1.20475 1.19533 1.21498 1.01452 0.92960 0.82671 1.22424 0.94922 0.91561 0.98489 0.89030 0.90830 0.93173 0.74677 0.86952 0.87522 0.87860 0.87404 0.86981 0.94034 0.86082 0.89583 0.88989 0.75725 0.94094 0.93836 0.97033 0.97358 0.92532 0.91043 0.90698 0.88987 0.94629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.82 8.30 71.98 0.60 -1.22 16 2 C 0.07 0.84 2.69 44.17 0.12 0.96 16 3 H 0.14 0.84 7.83 -2.39 -0.02 0.82 16 4 C 0.52 8.57 6.93 87.66 0.61 9.18 16 5 O -0.56 -14.64 14.02 -3.03 -0.04 -14.68 16 6 N -0.69 -6.90 5.57 -442.54 -2.46 -9.36 16 7 C 0.06 0.62 6.43 44.99 0.29 0.91 16 8 C -0.19 -1.32 10.46 30.59 0.32 -1.00 16 9 C -0.17 -1.04 10.46 30.59 0.32 -0.72 16 10 N -0.53 -9.50 4.28 -874.42 -3.75 -13.24 16 11 C 0.05 0.73 5.37 86.38 0.46 1.20 16 12 C 0.11 2.25 6.48 86.35 0.56 2.81 16 13 N -0.63 -18.27 3.01 -835.96 -2.52 -20.79 16 14 C 0.70 26.65 8.30 179.06 1.49 28.14 16 15 O -0.64 -29.79 15.81 -4.00 -0.06 -29.85 16 16 N -0.73 -27.41 5.41 -478.54 -2.59 -30.00 16 17 C 0.16 7.21 5.62 86.38 0.49 7.70 16 18 C 0.03 1.31 5.09 29.85 0.15 1.46 16 19 C -0.55 -30.97 9.11 25.60 0.23 -30.74 16 20 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 21 C 0.01 0.53 5.46 84.65 0.46 0.99 16 22 N -0.92 -53.98 13.29 21.45 0.28 -53.69 16 23 Si 0.96 43.79 29.54 68.60 2.03 45.82 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 25 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 26 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 27 C 0.14 3.81 6.61 86.35 0.57 4.38 16 28 C 0.05 1.25 4.23 86.38 0.37 1.61 16 29 H 0.09 0.47 8.14 -2.38 -0.02 0.45 16 30 H 0.07 0.77 7.15 -2.39 -0.02 0.76 16 31 H 0.05 0.73 6.48 -2.39 -0.02 0.72 16 32 H 0.42 1.36 8.83 -92.70 -0.82 0.54 16 33 H 0.11 1.87 7.40 -2.39 -0.02 1.85 16 34 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.11 0.36 8.14 -2.38 -0.02 0.34 16 38 H 0.04 0.70 7.22 -2.39 -0.02 0.68 16 39 H 0.12 1.14 7.92 -2.39 -0.02 1.12 16 40 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.09 1.79 5.86 -2.39 -0.01 1.78 16 42 H 0.41 12.91 6.13 -92.71 -0.57 12.34 16 43 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.04 2.03 8.14 -2.38 -0.02 2.01 16 45 H 0.01 0.60 8.14 -2.38 -0.02 0.58 16 46 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 47 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 48 H 0.07 1.95 8.14 -2.39 -0.02 1.94 16 49 H 0.07 2.38 7.04 -2.39 -0.02 2.36 16 50 H 0.09 2.29 6.05 -2.39 -0.01 2.27 16 51 H 0.04 0.83 6.69 -2.39 -0.02 0.82 16 Total: -1.00 -77.42 403.99 -2.51 -79.94 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: -0.44 Total: 20.20 kcal Atomic # 6 Polarization: 18.62 SS G_CDS: 7.03 Total: 25.66 kcal Atomic # 7 Polarization: -116.05 SS G_CDS: -11.03 Total: -127.08 kcal Atomic # 8 Polarization: -44.43 SS G_CDS: -0.11 Total: -44.53 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -77.42 -2.51 -79.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344014501.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.489 kcal (2) G-P(sol) polarization free energy of solvation -77.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds