Wall clock time and date at job start Tue Mar 31 2020 21:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08991 * 109.47493 * 2 1 4 4 C 1.50702 * 109.46895 * 239.99951 * 2 1 3 5 5 O 1.21284 * 119.99971 * 239.99817 * 4 2 1 6 6 N 1.34773 * 120.00140 * 60.00855 * 4 2 1 7 7 C 1.46504 * 119.99970 * 359.97438 * 6 4 2 8 8 C 1.46500 * 120.00149 * 179.97438 * 6 4 2 9 9 C 1.50706 * 109.46949 * 89.99539 * 8 6 4 10 10 H 1.07995 * 120.00167 * 359.72205 * 9 8 6 11 11 C 1.37879 * 119.99394 * 179.97438 * 9 8 6 12 12 N 1.31514 * 119.99350 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 120.00608 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47353 * 89.99430 * 13 11 9 15 15 H 1.48494 * 109.47031 * 209.99977 * 13 11 9 16 16 H 1.48504 * 109.46680 * 329.99678 * 13 11 9 17 17 N 1.46906 * 109.46923 * 120.00459 * 2 1 3 18 18 C 1.48530 * 110.99895 * 177.60396 * 17 2 1 19 19 C 1.54934 * 103.22833 * 159.71916 * 18 17 2 20 20 C 1.54599 * 102.92052 * 322.58574 * 19 18 17 21 21 H 1.09004 * 110.30989 * 263.04219 * 20 19 18 22 22 N 1.46499 * 110.39566 * 140.91668 * 20 19 18 23 23 C 1.34777 * 119.99754 * 89.23496 * 22 20 19 24 24 O 1.21579 * 120.00235 * 359.97438 * 23 22 20 25 25 N 1.34780 * 119.99610 * 180.02562 * 23 22 20 26 26 C 1.46498 * 120.00081 * 179.97438 * 25 23 22 27 27 C 1.52996 * 117.50481 * 223.74785 * 26 25 23 28 28 C 1.52998 * 117.49837 * 155.08386 * 26 25 23 29 29 C 1.47896 * 110.99599 * 294.99764 * 17 2 1 30 30 H 1.09000 * 109.47356 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47674 * 299.99957 * 1 2 3 32 32 H 1.08999 * 109.47062 * 60.00164 * 1 2 3 33 33 H 1.08997 * 109.47514 * 270.00843 * 7 6 4 34 34 H 1.09003 * 109.46763 * 30.00247 * 7 6 4 35 35 H 1.08995 * 109.47081 * 150.00666 * 7 6 4 36 36 H 1.09000 * 109.47175 * 329.99565 * 8 6 4 37 37 H 1.09001 * 109.47297 * 209.99073 * 8 6 4 38 38 H 0.97005 * 119.99656 * 180.02562 * 12 11 9 39 39 H 1.09004 * 110.66790 * 278.15463 * 18 17 2 40 40 H 1.09000 * 110.66854 * 41.28302 * 18 17 2 41 41 H 1.09000 * 110.72360 * 204.23076 * 19 18 17 42 42 H 1.08997 * 110.87841 * 81.00992 * 19 18 17 43 43 H 0.97000 * 119.99851 * 269.23328 * 22 20 19 44 44 H 0.97000 * 120.00429 * 0.02562 * 25 23 22 45 45 H 1.09005 * 115.54720 * 9.41786 * 26 25 23 46 46 H 1.09001 * 117.49519 * 0.02562 * 27 26 25 47 47 H 1.08995 * 117.50024 * 145.01547 * 27 26 25 48 48 H 1.09005 * 117.49616 * 214.98243 * 28 26 25 49 49 H 1.08992 * 117.49932 * 359.97438 * 28 26 25 50 50 H 1.09002 * 109.92041 * 333.50823 * 29 17 2 51 51 H 1.09002 * 109.91900 * 94.60681 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7068 -0.2499 -2.4546 7 6 0.8642 0.9410 -2.5890 8 6 2.1955 -0.9402 -3.6508 9 6 1.2032 -1.9976 -4.0612 10 1 0.3012 -2.1441 -3.4857 11 6 1.4496 -2.7815 -5.1684 12 7 0.5839 -3.7046 -5.5262 13 14 3.0136 -2.5334 -6.1593 14 1 4.0881 -3.4012 -5.6139 15 1 2.7620 -2.8898 -7.5787 16 1 3.4339 -1.1117 -6.0729 17 7 2.0196 -0.6926 1.1994 18 6 3.5032 -0.7629 1.2051 19 6 3.8406 -1.0124 2.6966 20 6 2.7913 -0.1518 3.4371 21 1 3.2197 0.8114 3.7146 22 7 2.3044 -0.8528 4.6277 23 6 2.9386 -0.6986 5.8069 24 8 3.9150 0.0219 5.8825 25 7 2.4909 -1.3439 6.9022 26 6 3.1805 -1.1768 8.1839 27 6 3.4251 -2.4322 9.0236 28 6 2.3687 -1.4134 9.4590 29 6 1.6461 0.0440 2.4263 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.1836 0.6429 -2.6224 34 1 1.0275 1.5997 -1.7360 35 1 1.1220 1.4665 -3.5085 36 1 3.1559 -1.4079 -3.4335 37 1 2.3165 -0.2214 -4.4612 38 1 0.7574 -4.2564 -6.3050 39 1 3.8516 -1.5912 0.5881 40 1 3.9343 0.1789 0.8656 41 1 4.8503 -0.6716 2.9259 42 1 3.7237 -2.0660 2.9502 43 1 1.5256 -1.4279 4.5674 44 1 1.7126 -1.9196 6.8418 45 1 3.9426 -0.3978 8.2097 46 1 3.0732 -3.3825 8.6222 47 1 4.3477 -2.4789 9.6020 48 1 2.5970 -0.7903 10.3238 49 1 1.3215 -1.6930 9.3443 50 1 1.5266 1.1038 2.2013 51 1 0.7168 -0.3565 2.8315 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355102927.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:56 Heat of formation + Delta-G solvation = -6.747264 kcal Electronic energy + Delta-G solvation = -29793.755808 eV Core-core repulsion = 25730.105196 eV Total energy + Delta-G solvation = -4063.650612 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.58176 -39.82712 -38.30862 -37.32416 -35.03043 -34.70984 -33.36838 -32.62466 -31.88123 -29.12179 -28.35703 -27.83262 -26.21333 -23.99766 -22.86015 -22.82001 -22.16986 -21.34167 -21.02467 -20.48868 -18.95579 -18.46128 -17.11566 -16.98154 -16.67667 -16.18483 -15.85372 -15.43005 -15.05137 -14.94775 -14.64398 -14.42232 -14.16605 -14.09029 -13.68945 -13.16202 -13.13995 -12.92590 -12.65594 -12.39503 -12.33658 -12.20793 -12.14813 -12.02442 -11.80320 -11.65545 -11.54661 -11.41321 -11.35552 -11.05080 -10.93358 -10.82858 -10.72447 -10.52661 -10.42958 -10.12271 -9.53441 -9.41384 -9.01425 -8.84620 -8.58409 -8.30497 -7.69903 -6.08100 -4.06534 2.30959 2.84047 3.28750 3.29941 3.34897 3.36762 3.54832 3.61565 3.86341 4.10484 4.35292 4.39702 4.43812 4.52381 4.56314 4.68870 4.92697 5.00655 5.15621 5.18029 5.24124 5.26079 5.26909 5.31336 5.34323 5.47140 5.51425 5.54765 5.62443 5.64340 5.75017 5.81845 5.83963 5.88553 6.05871 6.11880 6.16576 6.29669 6.35832 6.39691 6.62868 6.65870 6.88185 6.92941 7.02129 7.33577 7.61311 7.71602 8.22983 8.33410 8.47569 8.93840 8.99718 9.52157 11.05329 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.023667 B = 0.002017 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.817462 B =13878.646134 C =14190.936652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 H 0.061 0.939 4 C 0.513 3.487 5 O -0.524 6.524 6 N -0.597 5.597 7 C 0.083 3.917 8 C 0.217 3.783 9 C -0.527 4.527 10 H 0.075 0.925 11 C 0.071 3.929 12 N -0.897 5.897 13 Si 0.876 3.124 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.267 1.267 17 N -0.491 5.491 18 C 0.035 3.965 19 C -0.133 4.133 20 C 0.155 3.845 21 H 0.095 0.905 22 N -0.733 5.733 23 C 0.709 3.291 24 O -0.590 6.590 25 N -0.719 5.719 26 C 0.102 3.898 27 C -0.197 4.197 28 C -0.192 4.192 29 C 0.030 3.970 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.036 0.964 37 H 0.029 0.971 38 H 0.264 0.736 39 H 0.114 0.886 40 H 0.039 0.961 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.399 0.601 44 H 0.398 0.602 45 H 0.139 0.861 46 H 0.097 0.903 47 H 0.102 0.898 48 H 0.103 0.897 49 H 0.096 0.904 50 H 0.055 0.945 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.525 9.792 25.114 26.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.054 4.054 3 H 0.078 0.922 4 C 0.299 3.701 5 O -0.399 6.399 6 N -0.330 5.330 7 C -0.061 4.061 8 C 0.096 3.904 9 C -0.565 4.565 10 H 0.093 0.907 11 C -0.131 4.131 12 N -0.536 5.536 13 Si 0.703 3.297 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.191 1.191 17 N -0.216 5.216 18 C -0.093 4.093 19 C -0.172 4.172 20 C 0.049 3.951 21 H 0.113 0.887 22 N -0.388 5.388 23 C 0.409 3.591 24 O -0.468 6.468 25 N -0.373 5.373 26 C -0.005 4.005 27 C -0.236 4.236 28 C -0.231 4.231 29 C -0.098 4.098 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.054 0.946 37 H 0.047 0.953 38 H 0.074 0.926 39 H 0.132 0.868 40 H 0.058 0.942 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.233 0.767 44 H 0.231 0.769 45 H 0.156 0.844 46 H 0.115 0.885 47 H 0.120 0.880 48 H 0.121 0.879 49 H 0.115 0.885 50 H 0.073 0.927 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.533 9.302 25.017 26.735 hybrid contribution 0.093 0.208 -0.697 0.733 sum 1.626 9.510 24.320 26.164 Atomic orbital electron populations 1.22020 0.92216 1.04016 1.02630 1.21807 0.97516 0.95691 0.90386 0.92156 1.20035 0.81190 0.84933 0.83951 1.90618 1.38045 1.25516 1.85763 1.47780 1.50325 1.28225 1.06659 1.21810 0.95443 0.87320 1.01488 1.19674 0.96229 0.92800 0.81648 1.21319 1.06784 1.16608 1.11806 0.90737 1.24863 0.96459 0.94655 0.97096 1.69900 1.35731 1.21396 1.26557 0.86851 0.84181 0.79110 0.79520 1.19924 1.21097 1.19145 1.64657 1.10987 1.46260 0.99687 1.23444 0.87059 1.02400 0.96375 1.22966 0.98714 1.00983 0.94577 1.21707 0.94040 0.96166 0.83194 0.88665 1.45226 1.33974 1.52059 1.07534 1.15859 0.82708 0.80381 0.80171 1.90918 1.28011 1.42935 1.84893 1.44475 1.33834 1.51434 1.07517 1.21410 0.99081 1.00267 0.79740 1.23471 1.01067 0.94939 1.04086 1.23415 0.97586 1.03460 0.98610 1.23151 0.98248 0.97448 0.91001 0.90995 0.92300 0.90359 0.92397 0.92383 0.91470 0.94618 0.95284 0.92597 0.86837 0.94247 0.90655 0.90268 0.76675 0.76853 0.84384 0.88495 0.87980 0.87876 0.88521 0.92688 0.89698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 8.81 37.16 0.33 -1.60 16 2 C 0.06 0.85 1.39 -68.86 -0.10 0.75 16 3 H 0.06 0.76 7.22 -51.93 -0.37 0.39 16 4 C 0.51 10.21 6.80 -10.99 -0.07 10.14 16 5 O -0.52 -12.50 13.47 5.55 0.07 -12.43 16 6 N -0.60 -12.02 2.86 -182.95 -0.52 -12.54 16 7 C 0.08 1.23 8.85 59.85 0.53 1.76 16 8 C 0.22 5.26 4.27 -5.19 -0.02 5.24 16 9 C -0.53 -15.08 9.94 -34.44 -0.34 -15.42 16 10 H 0.07 2.34 8.06 -52.49 -0.42 1.92 16 11 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 12 N -0.90 -27.67 13.96 55.43 0.77 -26.90 16 13 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 14 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 17 N -0.49 -6.88 4.93 -223.89 -1.10 -7.98 16 18 C 0.03 0.50 5.49 -1.90 -0.01 0.49 16 19 C -0.13 -1.62 6.78 -24.87 -0.17 -1.79 16 20 C 0.15 1.64 3.34 -66.57 -0.22 1.42 16 21 H 0.10 1.10 7.56 -51.93 -0.39 0.71 16 22 N -0.73 -6.73 5.07 -57.34 -0.29 -7.02 16 23 C 0.71 7.74 8.56 -86.91 -0.74 6.99 16 24 O -0.59 -8.82 15.56 5.30 0.08 -8.74 16 25 N -0.72 -5.57 5.57 -58.68 -0.33 -5.90 16 26 C 0.10 0.76 6.43 -67.93 -0.44 0.32 16 27 C -0.20 -1.12 10.46 -26.69 -0.28 -1.40 16 28 C -0.19 -0.98 10.46 -26.69 -0.28 -1.26 16 29 C 0.03 0.31 5.31 -2.76 -0.01 0.30 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.06 0.58 7.35 -51.93 -0.38 0.20 16 32 H 0.08 0.94 4.53 -51.93 -0.24 0.71 16 33 H 0.06 0.84 6.95 -51.93 -0.36 0.48 16 34 H 0.06 0.66 6.01 -51.93 -0.31 0.35 16 35 H 0.07 0.93 7.89 -51.93 -0.41 0.52 16 36 H 0.04 0.92 6.85 -51.93 -0.36 0.57 16 37 H 0.03 0.67 6.95 -51.93 -0.36 0.31 16 38 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 39 H 0.11 2.01 6.19 -51.93 -0.32 1.68 16 40 H 0.04 0.54 8.02 -51.93 -0.42 0.13 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.08 1.01 8.06 -51.93 -0.42 0.60 16 43 H 0.40 2.75 8.37 -40.82 -0.34 2.41 16 44 H 0.40 2.02 8.84 -40.82 -0.36 1.66 16 45 H 0.14 1.24 7.40 -51.93 -0.38 0.86 16 46 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.05 0.51 7.65 -51.93 -0.40 0.12 16 51 H 0.08 0.77 7.66 -51.93 -0.40 0.37 16 LS Contribution 400.70 15.07 6.04 6.04 Total: -1.00 -36.47 400.70 -10.22 -46.69 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -8.35 Total: 3.95 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: -1.93 Total: 7.92 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: -1.47 Total: -60.34 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: 0.16 Total: -21.17 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.47 -10.22 -46.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355102927.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.944 kcal (2) G-P(sol) polarization free energy of solvation -36.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds