Wall clock time and date at job start Tue Mar 31 2020 21:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08991 * 109.47493 * 2 1 4 4 C 1.50702 * 109.46895 * 239.99951 * 2 1 3 5 5 O 1.21284 * 119.99971 * 239.99817 * 4 2 1 6 6 N 1.34773 * 120.00140 * 60.00855 * 4 2 1 7 7 C 1.46504 * 119.99970 * 359.97438 * 6 4 2 8 8 C 1.46500 * 120.00149 * 179.97438 * 6 4 2 9 9 C 1.50706 * 109.46949 * 89.99539 * 8 6 4 10 10 H 1.07995 * 120.00167 * 359.72205 * 9 8 6 11 11 C 1.37879 * 119.99394 * 179.97438 * 9 8 6 12 12 N 1.31514 * 119.99350 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 120.00608 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47353 * 89.99430 * 13 11 9 15 15 H 1.48494 * 109.47031 * 209.99977 * 13 11 9 16 16 H 1.48504 * 109.46680 * 329.99678 * 13 11 9 17 17 N 1.46906 * 109.46923 * 120.00459 * 2 1 3 18 18 C 1.48530 * 110.99895 * 177.60396 * 17 2 1 19 19 C 1.54934 * 103.22833 * 159.71916 * 18 17 2 20 20 C 1.54599 * 102.92052 * 322.58574 * 19 18 17 21 21 H 1.09004 * 110.30989 * 263.04219 * 20 19 18 22 22 N 1.46499 * 110.39566 * 140.91668 * 20 19 18 23 23 C 1.34777 * 119.99754 * 89.23496 * 22 20 19 24 24 O 1.21579 * 120.00235 * 359.97438 * 23 22 20 25 25 N 1.34780 * 119.99610 * 180.02562 * 23 22 20 26 26 C 1.46498 * 120.00081 * 179.97438 * 25 23 22 27 27 C 1.52996 * 117.50481 * 223.74785 * 26 25 23 28 28 C 1.52998 * 117.49837 * 155.08386 * 26 25 23 29 29 C 1.47896 * 110.99599 * 294.99764 * 17 2 1 30 30 H 1.09000 * 109.47356 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47674 * 299.99957 * 1 2 3 32 32 H 1.08999 * 109.47062 * 60.00164 * 1 2 3 33 33 H 1.08997 * 109.47514 * 270.00843 * 7 6 4 34 34 H 1.09003 * 109.46763 * 30.00247 * 7 6 4 35 35 H 1.08995 * 109.47081 * 150.00666 * 7 6 4 36 36 H 1.09000 * 109.47175 * 329.99565 * 8 6 4 37 37 H 1.09001 * 109.47297 * 209.99073 * 8 6 4 38 38 H 0.97005 * 119.99656 * 180.02562 * 12 11 9 39 39 H 1.09004 * 110.66790 * 278.15463 * 18 17 2 40 40 H 1.09000 * 110.66854 * 41.28302 * 18 17 2 41 41 H 1.09000 * 110.72360 * 204.23076 * 19 18 17 42 42 H 1.08997 * 110.87841 * 81.00992 * 19 18 17 43 43 H 0.97000 * 119.99851 * 269.23328 * 22 20 19 44 44 H 0.97000 * 120.00429 * 0.02562 * 25 23 22 45 45 H 1.09005 * 115.54720 * 9.41786 * 26 25 23 46 46 H 1.09001 * 117.49519 * 0.02562 * 27 26 25 47 47 H 1.08995 * 117.50024 * 145.01547 * 27 26 25 48 48 H 1.09005 * 117.49616 * 214.98243 * 28 26 25 49 49 H 1.08992 * 117.49932 * 359.97438 * 28 26 25 50 50 H 1.09002 * 109.92041 * 333.50823 * 29 17 2 51 51 H 1.09002 * 109.91900 * 94.60681 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7068 -0.2499 -2.4546 7 6 0.8642 0.9410 -2.5890 8 6 2.1955 -0.9402 -3.6508 9 6 1.2032 -1.9976 -4.0612 10 1 0.3012 -2.1441 -3.4857 11 6 1.4496 -2.7815 -5.1684 12 7 0.5839 -3.7046 -5.5262 13 14 3.0136 -2.5334 -6.1593 14 1 4.0881 -3.4012 -5.6139 15 1 2.7620 -2.8898 -7.5787 16 1 3.4339 -1.1117 -6.0729 17 7 2.0196 -0.6926 1.1994 18 6 3.5032 -0.7629 1.2051 19 6 3.8406 -1.0124 2.6966 20 6 2.7913 -0.1518 3.4371 21 1 3.2197 0.8114 3.7146 22 7 2.3044 -0.8528 4.6277 23 6 2.9386 -0.6986 5.8069 24 8 3.9150 0.0219 5.8825 25 7 2.4909 -1.3439 6.9022 26 6 3.1805 -1.1768 8.1839 27 6 3.4251 -2.4322 9.0236 28 6 2.3687 -1.4134 9.4590 29 6 1.6461 0.0440 2.4263 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.1836 0.6429 -2.6224 34 1 1.0275 1.5997 -1.7360 35 1 1.1220 1.4665 -3.5085 36 1 3.1559 -1.4079 -3.4335 37 1 2.3165 -0.2214 -4.4612 38 1 0.7574 -4.2564 -6.3050 39 1 3.8516 -1.5912 0.5881 40 1 3.9343 0.1789 0.8656 41 1 4.8503 -0.6716 2.9259 42 1 3.7237 -2.0660 2.9502 43 1 1.5256 -1.4279 4.5674 44 1 1.7126 -1.9196 6.8418 45 1 3.9426 -0.3978 8.2097 46 1 3.0732 -3.3825 8.6222 47 1 4.3477 -2.4789 9.6020 48 1 2.5970 -0.7903 10.3238 49 1 1.3215 -1.6930 9.3443 50 1 1.5266 1.1038 2.2013 51 1 0.7168 -0.3565 2.8315 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355102927.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:55 Heat of formation + Delta-G solvation = -36.152328 kcal Electronic energy + Delta-G solvation = -29795.030907 eV Core-core repulsion = 25730.105196 eV Total energy + Delta-G solvation = -4064.925712 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.56195 -40.98472 -39.39754 -38.02945 -36.65346 -35.76261 -34.78211 -34.07706 -32.94096 -30.65178 -29.41527 -29.08782 -27.57636 -25.44396 -23.97235 -23.31722 -23.23339 -22.38064 -21.90698 -21.42944 -20.06707 -19.59165 -19.13188 -18.09300 -17.77062 -17.46883 -16.76591 -16.61083 -16.22349 -16.06607 -15.87122 -15.58231 -15.39719 -15.08380 -14.88227 -14.66112 -14.27110 -14.06067 -13.75739 -13.65064 -13.59394 -13.42865 -13.26430 -13.18904 -13.05882 -12.61224 -12.56700 -12.45514 -12.39756 -12.35235 -12.31321 -12.07868 -11.92093 -11.81755 -11.72259 -11.45165 -11.33617 -10.82574 -10.49074 -10.19892 -9.57465 -9.40808 -9.31583 -8.33229 -6.37628 1.32082 1.36510 1.44443 1.59837 1.80352 2.04306 2.25360 2.31017 2.96312 3.01164 3.04339 3.19642 3.52937 3.57237 3.83287 3.85091 4.02512 4.08711 4.09932 4.11891 4.21280 4.27317 4.36614 4.42081 4.61150 4.67003 4.71546 4.75129 4.77435 4.79302 4.81470 4.86873 4.91501 4.97303 4.99004 5.04684 5.07888 5.14748 5.23287 5.33471 5.46672 5.52115 5.57741 5.64176 5.85337 5.91645 6.02738 6.25826 6.63665 6.72809 7.05598 7.22984 7.46812 7.55412 8.83756 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.023667 B = 0.002017 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.817462 B =13878.646134 C =14190.936652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.069 3.931 3 H 0.094 0.906 4 C 0.499 3.501 5 O -0.576 6.576 6 N -0.606 5.606 7 C 0.075 3.925 8 C 0.225 3.775 9 C -0.532 4.532 10 H 0.028 0.972 11 C 0.009 3.991 12 N -0.945 5.945 13 Si 0.948 3.052 14 H -0.279 1.279 15 H -0.275 1.275 16 H -0.237 1.237 17 N -0.512 5.512 18 C 0.039 3.961 19 C -0.126 4.126 20 C 0.163 3.837 21 H 0.091 0.909 22 N -0.722 5.722 23 C 0.704 3.296 24 O -0.634 6.634 25 N -0.706 5.706 26 C 0.073 3.927 27 C -0.192 4.192 28 C -0.171 4.171 29 C 0.037 3.963 30 H 0.040 0.960 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.057 0.943 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.016 0.984 37 H 0.051 0.949 38 H 0.268 0.732 39 H 0.072 0.928 40 H 0.045 0.955 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.412 0.588 44 H 0.412 0.588 45 H 0.117 0.883 46 H 0.101 0.899 47 H 0.106 0.894 48 H 0.113 0.887 49 H 0.110 0.890 50 H 0.078 0.922 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.022 12.133 26.533 29.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.043 4.043 3 H 0.111 0.889 4 C 0.287 3.713 5 O -0.455 6.455 6 N -0.338 5.338 7 C -0.066 4.066 8 C 0.102 3.898 9 C -0.571 4.571 10 H 0.047 0.953 11 C -0.189 4.189 12 N -0.586 5.586 13 Si 0.771 3.229 14 H -0.205 1.205 15 H -0.200 1.200 16 H -0.160 1.160 17 N -0.237 5.237 18 C -0.088 4.088 19 C -0.165 4.165 20 C 0.057 3.943 21 H 0.109 0.891 22 N -0.378 5.378 23 C 0.404 3.596 24 O -0.515 6.515 25 N -0.360 5.360 26 C -0.034 4.034 27 C -0.230 4.230 28 C -0.209 4.209 29 C -0.091 4.091 30 H 0.060 0.940 31 H 0.116 0.884 32 H 0.104 0.896 33 H 0.075 0.925 34 H 0.119 0.881 35 H 0.097 0.903 36 H 0.034 0.966 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.063 0.937 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.249 0.751 44 H 0.249 0.751 45 H 0.135 0.865 46 H 0.120 0.880 47 H 0.125 0.875 48 H 0.131 0.869 49 H 0.128 0.872 50 H 0.096 0.904 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.957 11.664 26.473 28.944 hybrid contribution 0.184 -0.587 -1.045 1.213 sum 1.141 11.078 25.427 27.759 Atomic orbital electron populations 1.22022 0.90536 1.02773 1.04956 1.21778 0.98489 0.96189 0.87828 0.88898 1.21156 0.80157 0.84580 0.85367 1.90603 1.40252 1.27998 1.86673 1.47894 1.50881 1.29392 1.05654 1.22138 0.94442 0.85889 1.04162 1.19338 0.94057 0.92360 0.84043 1.21555 1.06155 1.18116 1.11262 0.95350 1.25859 1.00277 0.94197 0.98529 1.70055 1.38192 1.22772 1.27552 0.85717 0.78919 0.80556 0.77743 1.20455 1.20040 1.16019 1.64595 1.10483 1.47827 1.00836 1.23218 0.87784 1.01020 0.96826 1.22856 0.99332 1.00742 0.93590 1.21533 0.93726 0.95523 0.83521 0.89083 1.45053 1.34092 1.51941 1.06691 1.16046 0.82307 0.80243 0.80981 1.90888 1.30038 1.44989 1.85629 1.44334 1.33976 1.50800 1.06858 1.21445 1.00262 1.01197 0.80452 1.23525 1.01735 0.94532 1.03239 1.23485 0.97961 1.02394 0.97081 1.23205 0.98454 0.98497 0.88920 0.94026 0.88394 0.89586 0.92461 0.88101 0.90266 0.96568 0.93119 0.92353 0.90969 0.93677 0.90943 0.91304 0.75140 0.75144 0.86542 0.88010 0.87536 0.86890 0.87213 0.90353 0.87832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 8.81 71.98 0.63 -2.67 16 2 C 0.07 1.86 1.39 44.17 0.06 1.92 16 3 H 0.09 1.94 7.22 -2.39 -0.02 1.92 16 4 C 0.50 19.90 6.80 87.66 0.60 20.50 16 5 O -0.58 -28.69 13.47 -3.04 -0.04 -28.73 16 6 N -0.61 -24.06 2.86 -851.11 -2.43 -26.49 16 7 C 0.08 2.03 8.85 127.77 1.13 3.17 16 8 C 0.22 10.89 4.27 85.63 0.37 11.26 16 9 C -0.53 -31.43 9.94 25.60 0.25 -31.18 16 10 H 0.03 1.88 8.06 -2.91 -0.02 1.85 16 11 C 0.01 0.55 5.47 84.66 0.46 1.01 16 12 N -0.95 -60.17 13.96 21.45 0.30 -59.87 16 13 Si 0.95 44.77 27.47 68.60 1.88 46.65 16 14 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 15 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 16 H -0.24 -9.98 6.54 99.48 0.65 -9.33 16 17 N -0.51 -13.67 4.93 -862.25 -4.25 -17.92 16 18 C 0.04 1.14 5.49 86.65 0.48 1.62 16 19 C -0.13 -3.07 6.78 31.80 0.22 -2.86 16 20 C 0.16 3.20 3.34 45.87 0.15 3.36 16 21 H 0.09 1.94 7.56 -2.38 -0.02 1.93 16 22 N -0.72 -12.10 5.07 -453.61 -2.30 -14.40 16 23 C 0.70 14.78 8.56 179.05 1.53 16.32 16 24 O -0.63 -19.01 15.56 -3.96 -0.06 -19.08 16 25 N -0.71 -10.06 5.57 -457.82 -2.55 -12.61 16 26 C 0.07 1.03 6.43 44.99 0.29 1.32 16 27 C -0.19 -1.89 10.46 30.62 0.32 -1.57 16 28 C -0.17 -1.37 10.46 30.62 0.32 -1.05 16 29 C 0.04 0.65 5.31 86.45 0.46 1.11 16 30 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.10 1.47 7.35 -2.39 -0.02 1.46 16 32 H 0.09 1.82 4.53 -2.39 -0.01 1.81 16 33 H 0.06 1.56 6.95 -2.39 -0.02 1.55 16 34 H 0.10 1.84 6.01 -2.39 -0.01 1.83 16 35 H 0.08 1.95 7.89 -2.39 -0.02 1.93 16 36 H 0.02 0.85 6.85 -2.39 -0.02 0.84 16 37 H 0.05 2.24 6.95 -2.39 -0.02 2.22 16 38 H 0.27 15.83 8.31 -92.70 -0.77 15.06 16 39 H 0.07 2.72 6.19 -2.38 -0.01 2.70 16 40 H 0.04 1.22 8.02 -2.39 -0.02 1.20 16 41 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.07 1.80 8.06 -2.39 -0.02 1.78 16 43 H 0.41 4.76 8.37 -92.71 -0.78 3.99 16 44 H 0.41 3.35 8.84 -92.71 -0.82 2.53 16 45 H 0.12 2.16 7.40 -2.38 -0.02 2.14 16 46 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.11 0.71 8.14 -2.38 -0.02 0.69 16 49 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 50 H 0.08 1.08 7.65 -2.39 -0.02 1.06 16 51 H 0.10 1.47 7.66 -2.39 -0.02 1.45 16 Total: -1.00 -85.71 400.70 -2.87 -88.58 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: -0.70 Total: 21.62 kcal Atomic # 6 Polarization: 14.97 SS G_CDS: 7.27 Total: 22.24 kcal Atomic # 7 Polarization: -120.06 SS G_CDS: -11.23 Total: -131.29 kcal Atomic # 8 Polarization: -47.70 SS G_CDS: -0.10 Total: -47.81 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.88 Total: 46.65 kcal Total: -85.71 -2.87 -88.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355102927.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.433 kcal (2) G-P(sol) polarization free energy of solvation -85.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds