Wall clock time and date at job start Tue Mar 31 2020 21:49:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 O 1.42899 * 109.47511 * 2 1
4 4 C 1.42900 * 114.00347 * 180.02562 * 3 2 1
5 5 C 1.50698 * 109.46931 * 179.97438 * 4 3 2
6 6 N 1.30292 * 126.34778 * 269.95375 * 5 4 3
7 7 N 1.28536 * 110.05307 * 179.76759 * 6 5 4
8 8 C 1.31219 * 109.85936 * 0.45372 * 7 6 5
9 9 N 1.38574 * 126.47367 * 179.82539 * 8 7 6
10 10 C 1.46902 * 111.00094 * 272.01317 * 9 8 7
11 11 C 1.46900 * 110.99803 * 35.96452 * 9 8 7
12 12 H 1.09001 * 109.47223 * 299.99843 * 11 9 8
13 13 C 1.53001 * 109.47397 * 60.00311 * 11 9 8
14 14 C 1.50708 * 109.46955 * 180.02562 * 11 9 8
15 15 H 1.07999 * 120.00015 * 333.04587 * 14 11 9
16 16 C 1.37881 * 119.99723 * 153.05052 * 14 11 9
17 17 N 1.31512 * 119.99749 * 174.19907 * 16 14 11
18 18 Si 1.86801 * 120.00224 * 354.46847 * 16 14 11
19 19 H 1.48499 * 109.46925 * 275.15409 * 18 16 14
20 20 H 1.48498 * 109.46937 * 35.14665 * 18 16 14
21 21 H 1.48493 * 109.47059 * 155.15444 * 18 16 14
22 22 N 1.36452 * 107.05440 * 359.56004 * 8 7 6
23 23 C 1.46497 * 127.13796 * 180.24624 * 22 8 7
24 24 C 1.52996 * 109.47338 * 95.54331 * 23 22 8
25 25 H 1.08992 * 109.87544 * 54.29984 * 24 23 22
26 26 C 1.54107 * 109.87689 * 175.30652 * 24 23 22
27 27 C 1.54815 * 104.18457 * 121.45358 * 26 24 23
28 28 C 1.54996 * 102.09713 * 20.87962 * 27 26 24
29 29 O 1.43747 * 109.87938 * 293.29067 * 24 23 22
30 30 H 1.08998 * 109.47503 * 60.00289 * 1 2 3
31 31 H 1.08998 * 109.47534 * 180.02562 * 1 2 3
32 32 H 1.09000 * 109.46928 * 300.00293 * 1 2 3
33 33 H 1.09004 * 109.47387 * 239.99690 * 2 1 3
34 34 H 1.09008 * 109.47350 * 119.99769 * 2 1 3
35 35 H 1.08996 * 109.47254 * 59.99541 * 4 3 2
36 36 H 1.09007 * 109.46643 * 299.99315 * 4 3 2
37 37 H 1.08993 * 109.47269 * 189.60395 * 10 9 8
38 38 H 1.09007 * 109.46622 * 309.60132 * 10 9 8
39 39 H 1.09005 * 109.47105 * 69.59690 * 10 9 8
40 40 H 1.09005 * 109.47016 * 294.46476 * 13 11 9
41 41 H 1.08995 * 109.47105 * 54.45957 * 13 11 9
42 42 H 1.08999 * 109.47364 * 174.46157 * 13 11 9
43 43 H 0.97000 * 119.99752 * 180.02562 * 17 16 14
44 44 H 1.09007 * 109.47160 * 215.54454 * 23 22 8
45 45 H 1.09001 * 109.47228 * 335.54057 * 23 22 8
46 46 H 1.09000 * 110.48649 * 240.12232 * 26 24 23
47 47 H 1.08995 * 110.48740 * 2.64805 * 26 24 23
48 48 H 1.09001 * 110.90935 * 139.07657 * 27 26 24
49 49 H 1.08999 * 110.90937 * 262.64230 * 27 26 24
50 50 H 1.08996 * 110.61504 * 81.47373 * 28 27 26
51 51 H 1.08998 * 110.62233 * 204.32056 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 8 2.0064 1.3472 0.0000
4 6 3.4309 1.4601 -0.0006
5 6 3.8194 2.9161 -0.0012
6 7 4.0189 3.6617 -1.0509
7 7 4.3321 4.8551 -0.6907
8 6 4.3588 4.9330 0.6189
9 7 4.6594 6.0572 1.3713
10 6 6.1052 6.1595 1.6105
11 6 4.1447 7.2738 0.7286
12 1 4.5960 7.3824 -0.2577
13 6 2.6249 7.1712 0.5855
14 6 4.4905 8.4729 1.5735
15 1 4.6264 8.3616 2.6391
16 6 4.6331 9.7121 0.9860
17 7 4.8215 10.7769 1.7345
18 14 4.5511 9.8797 -0.8727
19 1 5.8896 9.6042 -1.4540
20 1 3.5669 8.9085 -1.4143
21 1 4.1319 11.2594 -1.2273
22 7 4.0289 3.6995 1.0999
23 6 3.9216 3.2976 2.5046
24 6 2.4628 3.3997 2.9544
25 1 1.8266 2.8244 2.2819
26 6 2.3199 2.8680 4.3937
27 6 1.7398 4.0658 5.1847
28 6 1.1187 4.9293 4.0574
29 8 2.0485 4.7761 2.9609
30 1 -0.3634 0.5138 -0.8900
31 1 -0.3634 -1.0276 0.0005
32 1 -0.3633 0.5139 0.8900
33 1 1.8933 -0.5139 -0.8900
34 1 1.8933 -0.5138 0.8901
35 1 3.8333 0.9766 -0.8907
36 1 3.8340 0.9764 0.8893
37 1 6.2980 6.9465 2.3395
38 1 6.4780 5.2097 1.9941
39 1 6.6122 6.3980 0.6755
40 1 2.3785 6.3642 -0.1046
41 1 2.1814 6.9644 1.5595
42 1 2.2319 8.1119 0.1997
43 1 4.9215 11.6487 1.3212
44 1 4.2649 2.2689 2.6155
45 1 4.5379 3.9544 3.1185
46 1 1.6317 2.0232 4.4218
47 1 3.2926 2.5801 4.7924
48 1 0.9749 3.7343 5.8870
49 1 2.5302 4.6099 5.7017
50 1 0.1355 4.5491 3.7801
51 1 1.0526 5.9728 4.3653
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000359365747.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:49:48
Heat of formation + Delta-G solvation = 5.946395 kcal
Electronic energy + Delta-G solvation = -32121.178691 eV
Core-core repulsion = 28058.078517 eV
Total energy + Delta-G solvation = -4063.100174 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-42.56664 -39.36304 -38.25185 -37.04715 -34.86584 -32.70967 -32.15679 -32.00062
-30.28972 -30.19639 -29.61028 -26.75501 -25.76992 -25.14439 -24.30000 -23.05780
-22.35240 -21.73843 -21.21618 -20.37738 -19.31821 -17.31432 -17.09284 -16.73816
-16.35600 -16.16667 -15.91530 -15.50389 -15.40484 -14.91287 -14.88936 -14.41610
-13.69202 -13.66499 -13.60925 -13.17651 -12.90306 -12.88029 -12.67905 -12.40584
-12.38383 -12.04449 -11.85420 -11.75962 -11.69235 -11.50632 -11.45271 -11.12431
-11.02832 -10.89669 -10.87243 -10.64882 -10.44014 -10.29166 -10.07104 -9.93904
-9.86877 -9.69293 -9.43863 -9.18920 -8.66216 -8.54290 -7.60155 -6.07004
-4.06186 1.96095 2.61483 3.15033 3.37102 3.44484 3.55488 3.72069
3.83482 4.40280 4.43424 4.46999 4.47723 4.61157 4.69417 4.69809
4.79084 4.84517 4.95234 4.99828 5.06967 5.10530 5.22525 5.28294
5.28835 5.39860 5.43851 5.51495 5.62649 5.64304 5.67981 5.81988
5.85817 5.88877 5.91240 5.97911 6.13249 6.25687 6.38642 6.59848
6.64768 6.80172 6.82909 6.89387 6.97381 7.04652 7.15768 7.37890
7.64386 7.81723 8.09118 8.63298 8.99759 9.21737 9.56541 11.04913
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.012089 B = 0.004267 C = 0.003619
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2315.591275 B = 6560.631022 C = 7735.850450
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.058 3.942
3 O -0.380 6.380
4 C 0.163 3.837
5 C 0.144 3.856
6 N -0.266 5.266
7 N -0.326 5.326
8 C 0.402 3.598
9 N -0.453 5.453
10 C 0.050 3.950
11 C 0.200 3.800
12 H 0.020 0.980
13 C -0.129 4.129
14 C -0.505 4.505
15 H 0.083 0.917
16 C 0.079 3.921
17 N -0.895 5.895
18 Si 0.864 3.136
19 H -0.275 1.275
20 H -0.259 1.259
21 H -0.288 1.288
22 N -0.462 5.462
23 C 0.116 3.884
24 C 0.062 3.938
25 H 0.076 0.924
26 C -0.146 4.146
27 C -0.152 4.152
28 C 0.045 3.955
29 O -0.339 6.339
30 H 0.065 0.935
31 H 0.070 0.930
32 H 0.062 0.938
33 H 0.051 0.949
34 H 0.048 0.952
35 H 0.083 0.917
36 H 0.062 0.938
37 H 0.097 0.903
38 H 0.041 0.959
39 H 0.031 0.969
40 H 0.021 0.979
41 H 0.057 0.943
42 H 0.048 0.952
43 H 0.265 0.735
44 H 0.094 0.906
45 H 0.109 0.891
46 H 0.076 0.924
47 H 0.078 0.922
48 H 0.077 0.923
49 H 0.080 0.920
50 H 0.054 0.946
51 H 0.096 0.904
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.433 -23.676 5.995 25.020
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.019 4.019
3 O -0.299 6.299
4 C 0.084 3.916
5 C -0.123 4.123
6 N -0.109 5.109
7 N -0.171 5.171
8 C 0.047 3.953
9 N -0.179 5.179
10 C -0.097 4.097
11 C 0.095 3.905
12 H 0.038 0.962
13 C -0.188 4.188
14 C -0.543 4.543
15 H 0.101 0.899
16 C -0.124 4.124
17 N -0.533 5.533
18 Si 0.691 3.309
19 H -0.201 1.201
20 H -0.183 1.183
21 H -0.214 1.214
22 N -0.156 5.156
23 C -0.007 4.007
24 C 0.002 3.998
25 H 0.094 0.906
26 C -0.185 4.185
27 C -0.190 4.190
28 C -0.032 4.032
29 O -0.257 6.257
30 H 0.084 0.916
31 H 0.089 0.911
32 H 0.081 0.919
33 H 0.070 0.930
34 H 0.066 0.934
35 H 0.101 0.899
36 H 0.080 0.920
37 H 0.115 0.885
38 H 0.060 0.940
39 H 0.050 0.950
40 H 0.040 0.960
41 H 0.076 0.924
42 H 0.067 0.933
43 H 0.074 0.926
44 H 0.112 0.888
45 H 0.127 0.873
46 H 0.095 0.905
47 H 0.096 0.904
48 H 0.095 0.905
49 H 0.099 0.901
50 H 0.072 0.928
51 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges -5.584 -22.774 4.869 23.949
hybrid contribution 0.215 -0.441 -0.086 0.499
sum -5.369 -23.216 4.783 24.304
Atomic orbital electron populations
1.21735 0.93572 1.02133 1.03422 1.22482 0.95793 0.83440 1.00153
1.88033 1.19824 1.26594 1.95403 1.20282 0.82332 0.87110 1.01848
1.23900 1.09008 0.95997 0.83365 1.73913 1.14770 0.97984 1.24205
1.74764 1.22166 1.11367 1.08806 1.22948 0.98063 0.85889 0.88423
1.59188 1.14711 0.99845 1.44114 1.22214 0.84767 1.00979 1.01754
1.19728 0.92319 0.84951 0.93537 0.96206 1.21915 0.97645 0.98934
1.00276 1.20798 1.47990 0.89567 0.95968 0.89948 1.24862 0.94252
0.95640 0.97668 1.69881 1.49283 0.98785 1.35321 0.87053 0.79600
0.77426 0.86808 1.20070 1.18279 1.21413 1.46155 1.51855 1.10094
1.07519 1.22055 0.97859 1.01584 0.79225 1.23077 0.94419 0.85791
0.96472 0.90644 1.22914 1.02265 0.98889 0.94387 1.23114 1.01084
0.96357 0.98453 1.23567 0.92577 1.01274 0.85748 1.89249 1.61698
1.24143 1.50636 0.91623 0.91068 0.91904 0.93027 0.93381 0.89907
0.91950 0.88484 0.94010 0.94986 0.96026 0.92366 0.93292 0.92551
0.88834 0.87286 0.90547 0.90355 0.90459 0.90111 0.92757 0.88547
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.14 10.28 37.15 0.38 -0.76 16
2 C 0.06 0.47 6.66 37.15 0.25 0.72 16
3 O -0.38 -4.72 10.33 -35.23 -0.36 -5.09 16
4 C 0.16 1.90 6.31 36.00 0.23 2.13 16
5 C 0.14 2.43 7.70 -154.01 -1.19 1.24 16
6 N -0.27 -5.56 12.18 32.99 0.40 -5.15 16
7 N -0.33 -7.57 11.03 30.31 0.33 -7.24 16
8 C 0.40 8.45 5.58 -318.88 -1.78 6.67 16
9 N -0.45 -9.94 4.62 -176.08 -0.81 -10.75 16
10 C 0.05 1.00 9.11 60.07 0.55 1.54 16
11 C 0.20 5.05 1.35 -68.86 -0.09 4.95 16
12 H 0.02 0.55 5.50 -51.93 -0.29 0.26 16
13 C -0.13 -3.21 8.62 37.16 0.32 -2.89 16
14 C -0.50 -14.02 7.69 -34.44 -0.26 -14.28 16
15 H 0.08 2.45 7.80 -52.49 -0.41 2.04 16
16 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16
17 N -0.90 -26.96 13.96 55.43 0.77 -26.18 16
18 Si 0.86 22.37 26.30 -169.99 -4.47 17.90 16
19 H -0.27 -7.06 7.11 56.52 0.40 -6.66 16
20 H -0.26 -6.72 6.33 56.52 0.36 -6.37 16
21 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16
22 N -0.46 -7.83 2.79 -114.09 -0.32 -8.15 16
23 C 0.12 1.47 5.43 -4.05 -0.02 1.45 16
24 C 0.06 0.77 3.66 -26.15 -0.10 0.67 16
25 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16
26 C -0.15 -1.26 6.64 -25.20 -0.17 -1.43 16
27 C -0.15 -1.43 7.16 -24.72 -0.18 -1.60 16
28 C 0.05 0.56 7.72 38.21 0.29 0.86 16
29 O -0.34 -5.54 10.69 -35.23 -0.38 -5.92 16
30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16
32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16
33 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16
34 H 0.05 0.30 8.14 -51.92 -0.42 -0.12 16
35 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16
36 H 0.06 0.53 7.39 -51.92 -0.38 0.14 16
37 H 0.10 1.99 7.04 -51.93 -0.37 1.63 16
38 H 0.04 0.69 8.06 -51.92 -0.42 0.27 16
39 H 0.03 0.66 8.13 -51.93 -0.42 0.24 16
40 H 0.02 0.53 7.01 -51.93 -0.36 0.16 16
41 H 0.06 1.42 7.64 -51.93 -0.40 1.02 16
42 H 0.05 1.23 7.07 -51.93 -0.37 0.86 16
43 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16
44 H 0.09 0.82 7.43 -51.93 -0.39 0.43 16
45 H 0.11 1.44 8.10 -51.93 -0.42 1.02 16
46 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16
47 H 0.08 0.56 7.70 -51.93 -0.40 0.16 16
48 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16
49 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16
50 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16
51 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16
LS Contribution 406.67 15.07 6.13 6.13
Total: -1.00 -35.44 406.67 -9.44 -44.88
By element:
Atomic # 1 Polarization: 7.01 SS G_CDS: -8.87 Total: -1.86 kcal
Atomic # 6 Polarization: 3.29 SS G_CDS: -1.86 Total: 1.43 kcal
Atomic # 7 Polarization: -57.85 SS G_CDS: 0.38 Total: -57.48 kcal
Atomic # 8 Polarization: -10.26 SS G_CDS: -0.74 Total: -11.00 kcal
Atomic # 14 Polarization: 22.37 SS G_CDS: -4.47 Total: 17.90 kcal
Total LS contribution 6.13 Total: 6.13 kcal
Total: -35.44 -9.44 -44.88 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000359365747.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 50.830 kcal
(2) G-P(sol) polarization free energy of solvation -35.443 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.387 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.441 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.883 kcal
(6) G-S(sol) free energy of system = (1) + (5) 5.946 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds