Wall clock time and date at job start Tue Mar 31 2020 21:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47053 * 2 1 4 4 C 1.50698 * 109.46929 * 120.00241 * 2 1 3 5 5 O 1.21281 * 119.99875 * 120.00306 * 4 2 1 6 6 N 1.34777 * 120.00120 * 299.99780 * 4 2 1 7 7 C 1.46499 * 119.99616 * 0.02562 * 6 4 2 8 8 C 1.46501 * 120.00322 * 180.02562 * 6 4 2 9 9 C 1.50700 * 109.47101 * 89.99915 * 8 6 4 10 10 H 1.07998 * 119.99851 * 359.97438 * 9 8 6 11 11 C 1.37873 * 119.99445 * 180.02562 * 9 8 6 12 12 N 1.31513 * 120.00701 * 359.97438 * 11 9 8 13 13 Si 1.86808 * 119.99698 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47057 * 59.99490 * 13 11 9 15 15 H 1.48497 * 109.47244 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47029 * 299.99672 * 13 11 9 17 17 N 1.46901 * 109.46989 * 240.00081 * 2 1 3 18 18 C 1.46843 * 111.00435 * 305.78946 * 17 2 1 19 19 C 1.53038 * 109.52646 * 185.84050 * 18 17 2 20 20 C 1.53113 * 109.27797 * 300.82004 * 19 18 17 21 21 C 1.53126 * 109.15867 * 57.65395 * 20 19 18 22 22 H 1.09003 * 109.53333 * 62.30718 * 21 20 19 23 23 N 1.46504 * 109.50095 * 182.40047 * 21 20 19 24 24 C 1.47045 * 125.41364 * 239.77794 * 23 21 20 25 25 C 1.54107 * 103.86622 * 180.02562 * 24 23 21 26 26 N 1.47051 * 103.85994 * 0.02562 * 25 24 23 27 27 C 1.33952 * 109.18173 * 359.97438 * 26 25 24 28 28 O 1.21584 * 123.04486 * 180.27291 * 27 26 25 29 29 C 1.46849 * 111.00047 * 70.00378 * 17 2 1 30 30 H 1.08997 * 109.46934 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47324 * 299.99820 * 1 2 3 32 32 H 1.09004 * 109.47125 * 60.00276 * 1 2 3 33 33 H 1.09003 * 109.46777 * 90.00449 * 7 6 4 34 34 H 1.09006 * 109.47289 * 209.99686 * 7 6 4 35 35 H 1.08997 * 109.47990 * 330.00283 * 7 6 4 36 36 H 1.09000 * 109.47261 * 210.00147 * 8 6 4 37 37 H 1.09004 * 109.46862 * 330.00047 * 8 6 4 38 38 H 0.96996 * 120.00050 * 180.02562 * 12 11 9 39 39 H 1.09001 * 109.45764 * 305.85977 * 18 17 2 40 40 H 1.08996 * 109.45932 * 65.83378 * 18 17 2 41 41 H 1.09002 * 109.49989 * 60.76108 * 19 18 17 42 42 H 1.08998 * 109.50551 * 180.87718 * 19 18 17 43 43 H 1.08992 * 109.52611 * 297.75081 * 20 19 18 44 44 H 1.08996 * 109.52155 * 177.55440 * 20 19 18 45 45 H 1.09004 * 110.55006 * 298.59749 * 24 23 21 46 46 H 1.09000 * 110.55015 * 61.26478 * 24 23 21 47 47 H 1.09002 * 110.54423 * 118.59321 * 25 24 23 48 48 H 1.08993 * 110.54795 * 241.26089 * 25 24 23 49 49 H 0.97001 * 125.41488 * 179.97438 * 26 25 24 50 50 H 1.08997 * 109.46440 * 54.13869 * 29 17 2 51 51 H 1.08998 * 109.44852 * 294.16509 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7067 -0.2500 2.4546 7 6 0.8640 0.9408 2.5889 8 6 2.1954 -0.9403 3.6508 9 6 3.5228 -0.3563 4.0607 10 1 3.9589 0.4482 3.4872 11 6 4.1808 -0.8500 5.1671 12 7 3.6500 -1.8301 5.8651 13 14 5.8259 -0.1256 5.6757 14 1 5.6598 1.3200 5.9722 15 1 6.3213 -0.8254 6.8881 16 1 6.8041 -0.2951 4.5714 17 7 2.0196 -0.6925 -1.1995 18 6 1.4392 -2.0372 -1.3047 19 6 2.0793 -2.7802 -2.4795 20 6 1.8311 -1.9945 -3.7701 21 6 2.4025 -0.5822 -3.6164 22 1 3.4806 -0.6396 -3.4656 23 7 2.1186 0.1945 -4.8257 24 6 3.1284 0.8062 -5.7022 25 6 2.2957 1.4912 -6.8032 26 7 0.9050 1.1932 -6.4298 27 6 0.8977 0.4611 -5.3080 28 8 -0.1244 0.0697 -4.7784 29 6 1.7530 0.0970 -2.4086 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.1838 0.6424 2.6225 34 1 1.1217 1.4664 3.5085 35 1 1.0271 1.5996 1.7360 36 1 1.4775 -0.8152 4.4613 37 1 2.3169 -2.0016 3.4336 38 1 4.1128 -2.1770 6.6437 39 1 1.6264 -2.5867 -0.3821 40 1 0.3645 -1.9571 -1.4680 41 1 3.1522 -2.8727 -2.3104 42 1 1.6372 -3.7726 -2.5669 43 1 0.7595 -1.9351 -3.9600 44 1 2.3224 -2.4975 -4.6029 45 1 3.7159 1.5424 -5.1535 46 1 3.7775 0.0419 -6.1296 47 1 2.4699 2.5672 -6.8010 48 1 2.5313 1.0685 -7.7798 49 1 0.1178 1.4810 -6.9181 50 1 2.1681 1.0976 -2.2879 51 1 0.6768 0.1669 -2.5665 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000363374723.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:34 Heat of formation + Delta-G solvation = -24.504900 kcal Electronic energy + Delta-G solvation = -31179.110702 eV Core-core repulsion = 27114.690060 eV Total energy + Delta-G solvation = -4064.420641 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.38009 -39.85020 -38.00243 -36.50656 -35.00134 -34.73521 -33.13478 -32.45073 -30.24245 -29.66066 -28.57905 -27.44605 -26.11946 -24.82870 -23.74444 -23.33072 -23.26763 -21.84444 -20.50879 -19.25736 -18.33993 -17.88401 -16.82593 -16.53252 -16.37352 -16.18577 -15.43208 -15.05348 -14.93829 -14.59551 -14.50779 -14.37926 -14.27092 -14.03041 -13.79095 -13.69552 -13.20630 -12.98373 -12.76134 -12.67154 -12.57202 -12.36025 -12.22848 -12.07069 -11.78269 -11.64659 -11.28040 -11.12780 -11.06389 -10.84294 -10.73137 -10.55893 -10.49938 -10.39466 -10.10838 -10.08386 -9.57501 -9.54744 -8.85606 -8.65621 -8.39037 -7.99597 -7.54413 -5.99803 -4.04284 2.27966 2.95024 3.34889 3.39098 3.41630 3.50753 3.53663 3.84520 4.02448 4.29661 4.46863 4.49496 4.58740 4.80550 4.91710 5.00291 5.06304 5.11926 5.23037 5.28974 5.30417 5.33870 5.34630 5.37713 5.45879 5.58884 5.60894 5.70438 5.80711 5.82913 5.89282 5.97762 6.01254 6.05931 6.10316 6.17958 6.31805 6.41444 6.45956 6.56673 6.79819 7.03604 7.23870 7.29559 7.31585 7.50039 7.61470 7.97128 8.28665 8.39623 8.50059 8.95923 9.20453 9.60742 11.08182 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.019065 B = 0.002597 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.316659 B =10780.690094 C =11027.531669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.068 3.932 3 H 0.099 0.901 4 C 0.513 3.487 5 O -0.522 6.522 6 N -0.603 5.603 7 C 0.082 3.918 8 C 0.247 3.753 9 C -0.524 4.524 10 H 0.056 0.944 11 C 0.061 3.939 12 N -0.896 5.896 13 Si 0.898 3.102 14 H -0.278 1.278 15 H -0.287 1.287 16 H -0.276 1.276 17 N -0.509 5.509 18 C 0.046 3.954 19 C -0.109 4.109 20 C -0.134 4.134 21 C 0.189 3.811 22 H 0.099 0.901 23 N -0.628 5.628 24 C 0.091 3.909 25 C 0.093 3.907 26 N -0.747 5.747 27 C 0.698 3.302 28 O -0.581 6.581 29 C 0.042 3.958 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.046 0.954 34 H 0.072 0.928 35 H 0.057 0.943 36 H 0.031 0.969 37 H 0.043 0.957 38 H 0.263 0.737 39 H 0.100 0.900 40 H 0.031 0.969 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.061 0.939 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.081 0.919 48 H 0.081 0.919 49 H 0.427 0.573 50 H 0.070 0.930 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.765 7.687 -25.619 27.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.044 4.044 3 H 0.117 0.883 4 C 0.298 3.702 5 O -0.398 6.398 6 N -0.336 5.336 7 C -0.062 4.062 8 C 0.128 3.872 9 C -0.563 4.563 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.535 5.535 13 Si 0.725 3.275 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.202 1.202 17 N -0.233 5.233 18 C -0.081 4.081 19 C -0.147 4.147 20 C -0.172 4.172 21 C 0.087 3.913 22 H 0.117 0.883 23 N -0.367 5.367 24 C -0.033 4.033 25 C -0.032 4.032 26 N -0.409 5.409 27 C 0.398 3.602 28 O -0.459 6.459 29 C -0.087 4.087 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.049 0.951 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.118 0.882 40 H 0.049 0.951 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.095 0.905 44 H 0.079 0.921 45 H 0.101 0.899 46 H 0.100 0.900 47 H 0.099 0.901 48 H 0.099 0.901 49 H 0.268 0.732 50 H 0.088 0.912 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.298 6.683 -25.024 26.255 hybrid contribution -0.132 0.930 -0.071 0.942 sum -4.430 7.613 -25.096 26.596 Atomic orbital electron populations 1.22647 0.95904 1.03327 1.03388 1.21602 0.93892 0.98642 0.90305 0.88326 1.20026 0.81060 0.85199 0.83875 1.90625 1.37024 1.26380 1.85815 1.48113 1.49910 1.28334 1.07271 1.21770 0.93756 0.88276 1.02373 1.19257 0.94105 0.93689 0.80137 1.21404 1.04845 1.18980 1.11078 0.92540 1.24932 0.97904 0.94981 0.96305 1.69922 1.39066 1.26132 1.18400 0.86566 0.84024 0.78990 0.77874 1.20318 1.21233 1.20152 1.61715 1.58957 1.02430 1.00218 1.22324 0.95605 0.89541 1.00616 1.21494 1.02235 0.97975 0.93017 1.22011 1.02656 0.94273 0.98266 1.20776 1.00503 0.89479 0.80564 0.88250 1.47346 1.05482 1.56554 1.27314 1.22405 0.92237 0.97761 0.90906 1.22312 0.81472 1.00970 0.98439 1.45153 1.08594 1.58583 1.28592 1.15955 0.84230 0.79092 0.80883 1.90952 1.33044 1.58555 1.63338 1.22419 1.00272 0.96692 0.89330 0.91800 0.90256 0.92017 0.93554 0.90905 0.92458 0.95117 0.93878 0.92716 0.88176 0.95057 0.90750 0.91266 0.90468 0.92074 0.89893 0.89959 0.90092 0.90120 0.73162 0.91160 0.92656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.70 8.08 37.16 0.30 -2.40 16 2 C 0.07 1.10 1.93 -68.87 -0.13 0.97 16 3 H 0.10 1.49 7.25 -51.93 -0.38 1.11 16 4 C 0.51 10.89 6.75 -10.99 -0.07 10.81 16 5 O -0.52 -13.20 13.91 5.56 0.08 -13.12 16 6 N -0.60 -12.99 2.86 -182.95 -0.52 -13.51 16 7 C 0.08 1.33 8.80 59.85 0.53 1.86 16 8 C 0.25 6.56 5.16 -5.19 -0.03 6.53 16 9 C -0.52 -15.05 9.39 -34.44 -0.32 -15.38 16 10 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 12 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 13 Si 0.90 22.11 29.54 -169.99 -5.02 17.08 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 N -0.51 -8.01 4.34 -228.09 -0.99 -9.00 16 18 C 0.05 0.73 4.36 -3.84 -0.02 0.71 16 19 C -0.11 -1.43 6.09 -26.65 -0.16 -1.60 16 20 C -0.13 -1.61 5.33 -26.61 -0.14 -1.76 16 21 C 0.19 2.19 2.94 -67.85 -0.20 1.99 16 22 H 0.10 1.09 8.10 -51.93 -0.42 0.67 16 23 N -0.63 -6.26 2.85 -171.10 -0.49 -6.75 16 24 C 0.09 0.52 7.65 -3.17 -0.02 0.49 16 25 C 0.09 0.39 8.06 -3.16 -0.03 0.37 16 26 N -0.75 -5.64 6.37 -64.70 -0.41 -6.06 16 27 C 0.70 8.16 8.06 -88.39 -0.71 7.45 16 28 O -0.58 -9.21 14.97 5.29 0.08 -9.13 16 29 C 0.04 0.56 4.44 -3.84 -0.02 0.54 16 30 H 0.06 0.94 6.46 -51.93 -0.34 0.61 16 31 H 0.08 1.01 4.53 -51.93 -0.24 0.78 16 32 H 0.06 0.81 6.81 -51.93 -0.35 0.45 16 33 H 0.05 0.65 6.95 -51.93 -0.36 0.29 16 34 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 35 H 0.06 0.78 6.01 -51.93 -0.31 0.46 16 36 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 37 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 38 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.10 1.88 5.78 -51.93 -0.30 1.58 16 40 H 0.03 0.48 6.58 -51.93 -0.34 0.14 16 41 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.08 1.10 6.71 -51.93 -0.35 0.75 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 48 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 49 H 0.43 2.54 8.96 -40.82 -0.37 2.18 16 50 H 0.07 0.90 8.01 -51.93 -0.42 0.48 16 51 H 0.06 0.84 5.50 -51.93 -0.29 0.55 16 LS Contribution 386.27 15.07 5.82 5.82 Total: -1.00 -36.56 386.27 -10.03 -46.59 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -8.18 Total: 2.01 kcal Atomic # 6 Polarization: 13.38 SS G_CDS: -1.13 Total: 12.25 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: -1.68 Total: -61.51 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: 0.16 Total: -22.25 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.56 -10.03 -46.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363374723.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.083 kcal (2) G-P(sol) polarization free energy of solvation -36.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds