Wall clock time and date at job start Tue Mar 31 2020 21:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46880 * 2 1 4 4 C 1.50698 * 109.47325 * 119.99906 * 2 1 3 5 5 O 1.21278 * 119.99635 * 95.49282 * 4 2 1 6 6 N 1.34775 * 120.00133 * 275.49775 * 4 2 1 7 7 C 1.46501 * 119.99812 * 355.36663 * 6 4 2 8 8 C 1.46497 * 119.99761 * 175.37063 * 6 4 2 9 9 C 1.50702 * 109.47111 * 89.99984 * 8 6 4 10 10 H 1.08008 * 120.00098 * 359.97438 * 9 8 6 11 11 C 1.37875 * 119.99814 * 179.97438 * 9 8 6 12 12 N 1.31515 * 120.00544 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99827 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.46954 * 180.02562 * 13 11 9 15 15 H 1.48501 * 109.46836 * 299.99712 * 13 11 9 16 16 H 1.48494 * 109.47490 * 59.99720 * 13 11 9 17 17 N 1.46901 * 109.47325 * 240.00421 * 2 1 3 18 18 C 1.46840 * 111.00240 * 179.76343 * 17 2 1 19 19 C 1.53034 * 109.52717 * 174.15913 * 18 17 2 20 20 C 1.53124 * 109.27837 * 59.17599 * 19 18 17 21 21 C 1.53119 * 109.15966 * 302.35186 * 20 19 18 22 22 H 1.08999 * 109.53408 * 297.68703 * 21 20 19 23 23 N 1.46499 * 109.50008 * 177.59534 * 21 20 19 24 24 C 1.47058 * 125.41294 * 119.91770 * 23 21 20 25 25 C 1.54096 * 103.86393 * 179.86789 * 24 23 21 26 26 N 1.47055 * 103.86359 * 0.37206 * 25 24 23 27 27 C 1.33945 * 109.17798 * 359.75510 * 26 25 24 28 28 O 1.21588 * 123.04162 * 179.97438 * 27 26 25 29 29 C 1.46847 * 111.00049 * 55.54859 * 17 2 1 30 30 H 1.09002 * 109.47287 * 293.64426 * 1 2 3 31 31 H 1.09003 * 109.47511 * 53.64909 * 1 2 3 32 32 H 1.09004 * 109.46995 * 173.64269 * 1 2 3 33 33 H 1.08999 * 109.46906 * 275.44227 * 7 6 4 34 34 H 1.08997 * 109.47326 * 35.44458 * 7 6 4 35 35 H 1.09002 * 109.46532 * 155.44448 * 7 6 4 36 36 H 1.08998 * 109.47493 * 329.99549 * 8 6 4 37 37 H 1.09002 * 109.46916 * 209.99502 * 8 6 4 38 38 H 0.96999 * 120.00351 * 180.02562 * 12 11 9 39 39 H 1.09004 * 109.46139 * 294.17531 * 18 17 2 40 40 H 1.08999 * 109.46234 * 54.14054 * 18 17 2 41 41 H 1.09004 * 109.50273 * 299.24332 * 19 18 17 42 42 H 1.08996 * 109.50939 * 179.12027 * 19 18 17 43 43 H 1.08995 * 109.52408 * 182.44365 * 20 19 18 44 44 H 1.08996 * 109.57454 * 62.28418 * 20 19 18 45 45 H 1.09004 * 110.54316 * 298.59476 * 24 23 21 46 46 H 1.09004 * 110.54999 * 61.39630 * 24 23 21 47 47 H 1.09004 * 110.75804 * 241.67121 * 25 24 23 48 48 H 1.09007 * 110.46631 * 118.92684 * 25 24 23 49 49 H 0.96999 * 125.41160 * 179.75953 * 26 25 24 50 50 H 1.09001 * 109.46573 * 305.85952 * 29 17 2 51 51 H 1.09000 * 109.46355 * 65.82990 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.3293 -1.8849 1.1737 6 7 2.1516 -0.0405 2.3938 7 6 1.8904 1.4003 2.4396 8 6 2.5425 -0.7532 3.6126 9 6 4.0439 -0.7405 3.7423 10 1 4.6466 -0.2508 2.9917 11 6 4.6479 -1.3539 4.8193 12 7 3.9140 -1.9497 5.7336 13 14 6.5090 -1.3374 4.9805 14 1 6.9052 -2.0600 6.2158 15 1 7.1139 -2.0065 3.8007 16 1 6.9873 0.0665 5.0525 17 7 2.0197 -0.6924 -1.1995 18 6 3.4876 -0.7071 -1.2362 19 6 3.9612 -1.5581 -2.4166 20 6 3.4052 -0.9722 -3.7176 21 6 1.8771 -0.9233 -3.6340 22 1 1.4850 -1.9352 -3.5322 23 7 1.3401 -0.3108 -4.8517 24 6 0.4180 -0.9590 -5.7962 25 6 0.1779 0.1156 -6.8742 26 7 0.9974 1.2520 -6.4275 27 6 1.6154 0.9265 -5.2846 28 8 2.3595 1.6853 -4.6938 29 6 1.4640 -0.0906 -2.4183 30 1 -0.3634 0.4122 0.9414 31 1 -0.3634 0.6091 -0.8277 32 1 -0.3633 -1.0214 -0.1138 33 1 2.7901 1.9421 2.1480 34 1 1.0804 1.6447 1.7524 35 1 1.6063 1.6860 3.4524 36 1 2.1911 -1.7836 3.5596 37 1 2.0988 -0.2622 4.4787 38 1 4.3390 -2.3809 6.4914 39 1 3.8582 0.3116 -1.3511 40 1 3.8699 -1.1299 -0.3072 41 1 3.6024 -2.5803 -2.2955 42 1 5.0505 -1.5561 -2.4529 43 1 3.7042 -1.6001 -4.5568 44 1 3.7947 0.0358 -3.8598 45 1 0.8783 -1.8455 -6.2327 46 1 -0.5180 -1.2173 -5.3009 47 1 -0.8750 0.3951 -6.9133 48 1 0.5148 -0.2395 -7.8482 49 1 1.0776 2.1023 -6.8873 50 1 0.3765 -0.0657 -2.3477 51 1 1.8440 0.9251 -2.5277 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000363374724.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:38 Heat of formation + Delta-G solvation = -30.599175 kcal Electronic energy + Delta-G solvation = -31216.230815 eV Core-core repulsion = 27151.545906 eV Total energy + Delta-G solvation = -4064.684909 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.37485 -39.71668 -37.98679 -36.50601 -34.95657 -34.59635 -33.25816 -32.46945 -30.10502 -29.89116 -28.68749 -27.69258 -25.86933 -24.85612 -23.79915 -23.33107 -23.07712 -21.38974 -20.68060 -19.42906 -18.28302 -17.88170 -16.80832 -16.56293 -16.52110 -16.36121 -15.48797 -15.00983 -14.94866 -14.81467 -14.38774 -14.27302 -14.05441 -13.98394 -13.62997 -13.54016 -13.37338 -13.02392 -12.92871 -12.73420 -12.53700 -12.20822 -12.06241 -11.95552 -11.77966 -11.56046 -11.52140 -11.28845 -11.14896 -10.86406 -10.80238 -10.52060 -10.48363 -10.40321 -10.09912 -10.08892 -9.58768 -9.54465 -8.84497 -8.68914 -8.38663 -8.04389 -7.56288 -5.99619 -4.03848 2.27488 2.95306 3.35441 3.39306 3.39847 3.45869 3.56569 3.85352 4.01745 4.24507 4.45980 4.49401 4.57717 4.81360 4.90947 4.97682 5.05517 5.11903 5.24427 5.28044 5.30336 5.34592 5.37416 5.42314 5.45767 5.55552 5.67191 5.68465 5.78695 5.85791 5.94039 5.98761 6.00766 6.02459 6.11340 6.19024 6.30797 6.36531 6.46185 6.56321 6.80003 7.02528 7.21367 7.28067 7.30365 7.47999 7.61777 7.96961 8.28715 8.39959 8.49059 8.95826 9.19736 9.61039 11.08369 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.020559 B = 0.002697 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.581036 B =10378.635506 C =10914.918826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.066 3.934 3 H 0.056 0.944 4 C 0.511 3.489 5 O -0.519 6.519 6 N -0.605 5.605 7 C 0.084 3.916 8 C 0.248 3.752 9 C -0.523 4.523 10 H 0.055 0.945 11 C 0.061 3.939 12 N -0.896 5.896 13 Si 0.897 3.103 14 H -0.286 1.286 15 H -0.276 1.276 16 H -0.277 1.277 17 N -0.510 5.510 18 C 0.049 3.951 19 C -0.107 4.107 20 C -0.134 4.134 21 C 0.190 3.810 22 H 0.100 0.900 23 N -0.629 5.629 24 C 0.091 3.909 25 C 0.093 3.907 26 N -0.747 5.747 27 C 0.698 3.302 28 O -0.581 6.581 29 C 0.041 3.959 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.046 0.954 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.042 0.958 37 H 0.031 0.969 38 H 0.263 0.737 39 H 0.030 0.970 40 H 0.093 0.907 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.061 0.939 44 H 0.077 0.923 45 H 0.082 0.918 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.080 0.920 49 H 0.427 0.573 50 H 0.077 0.923 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.815 4.917 -25.553 28.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.046 4.046 3 H 0.073 0.927 4 C 0.296 3.704 5 O -0.394 6.394 6 N -0.339 5.339 7 C -0.060 4.060 8 C 0.129 3.871 9 C -0.562 4.562 10 H 0.074 0.926 11 C -0.141 4.141 12 N -0.535 5.535 13 Si 0.725 3.275 14 H -0.212 1.212 15 H -0.202 1.202 16 H -0.203 1.203 17 N -0.236 5.236 18 C -0.078 4.078 19 C -0.146 4.146 20 C -0.173 4.173 21 C 0.087 3.913 22 H 0.118 0.882 23 N -0.367 5.367 24 C -0.033 4.033 25 C -0.032 4.032 26 N -0.409 5.409 27 C 0.398 3.602 28 O -0.458 6.458 29 C -0.088 4.088 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.060 0.940 37 H 0.049 0.951 38 H 0.073 0.927 39 H 0.048 0.952 40 H 0.112 0.888 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.096 0.904 45 H 0.100 0.900 46 H 0.101 0.899 47 H 0.099 0.901 48 H 0.098 0.902 49 H 0.269 0.731 50 H 0.095 0.905 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.372 3.978 -24.895 27.262 hybrid contribution 1.232 1.281 -0.195 1.788 sum -9.141 5.259 -25.090 27.216 Atomic orbital electron populations 1.21788 0.92636 1.03292 1.01975 1.21627 0.96805 0.95994 0.90175 0.92654 1.20009 0.79045 0.87541 0.83815 1.90666 1.48634 1.16051 1.84045 1.48164 1.67092 1.08116 1.10491 1.21655 0.99601 0.82456 1.02287 1.19278 0.95306 0.93040 0.79496 1.21386 0.91841 1.35336 1.07609 0.92642 1.24925 0.98416 0.95103 0.95650 1.69919 1.35396 1.36252 1.11980 0.86579 0.85457 0.78080 0.77429 1.21205 1.20152 1.20314 1.61601 1.08513 1.53543 0.99961 1.22213 0.86670 0.98379 1.00544 1.21477 1.00126 1.00207 0.92773 1.22018 0.94375 1.02676 0.98194 1.20772 0.93792 0.96339 0.80375 0.88222 1.47344 1.49727 1.14342 1.25310 1.22401 0.94686 0.96377 0.89789 1.22319 0.96573 0.86240 0.98078 1.45157 1.51209 1.18052 1.26522 1.15960 0.80587 0.82494 0.81165 1.90963 1.40843 1.53422 1.60566 1.22464 1.00121 0.97213 0.89019 0.91534 0.92146 0.90943 0.93508 0.92801 0.91116 0.93982 0.95084 0.92719 0.95182 0.88840 0.90676 0.91102 0.92010 0.90434 0.89972 0.89889 0.90072 0.90166 0.73150 0.90479 0.93072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 8.33 37.16 0.31 -1.56 16 2 C 0.07 1.09 1.64 -68.87 -0.11 0.97 16 3 H 0.06 0.88 6.84 -51.93 -0.36 0.53 16 4 C 0.51 10.94 5.86 -10.99 -0.06 10.88 16 5 O -0.52 -13.28 15.02 5.56 0.08 -13.20 16 6 N -0.61 -13.22 2.86 -182.96 -0.52 -13.74 16 7 C 0.08 1.41 9.85 59.85 0.59 2.00 16 8 C 0.25 6.61 5.17 -5.19 -0.03 6.58 16 9 C -0.52 -15.13 9.39 -34.44 -0.32 -15.45 16 10 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 11 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 12 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 13 Si 0.90 22.31 29.54 -169.99 -5.02 17.28 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 15 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 N -0.51 -8.14 4.23 -228.09 -0.97 -9.10 16 18 C 0.05 0.83 5.14 -3.84 -0.02 0.81 16 19 C -0.11 -1.48 6.09 -26.65 -0.16 -1.64 16 20 C -0.13 -1.66 5.33 -26.61 -0.14 -1.81 16 21 C 0.19 2.19 2.94 -67.85 -0.20 1.99 16 22 H 0.10 1.06 8.10 -51.93 -0.42 0.64 16 23 N -0.63 -6.21 2.85 -171.10 -0.49 -6.70 16 24 C 0.09 0.49 7.65 -3.17 -0.02 0.47 16 25 C 0.09 0.38 8.06 -3.17 -0.03 0.35 16 26 N -0.75 -5.64 6.37 -64.70 -0.41 -6.05 16 27 C 0.70 8.21 8.06 -88.40 -0.71 7.50 16 28 O -0.58 -9.39 14.97 5.29 0.08 -9.32 16 29 C 0.04 0.55 4.44 -3.84 -0.02 0.53 16 30 H 0.07 0.85 7.17 -51.93 -0.37 0.48 16 31 H 0.06 0.68 6.59 -51.93 -0.34 0.34 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.73 5.58 -51.93 -0.29 0.44 16 35 H 0.07 1.13 7.83 -51.93 -0.41 0.72 16 36 H 0.04 1.26 7.49 -51.93 -0.39 0.87 16 37 H 0.03 0.83 7.86 -51.93 -0.41 0.42 16 38 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.09 1.90 6.16 -51.93 -0.32 1.58 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.08 1.14 6.71 -51.93 -0.35 0.79 16 45 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 48 H 0.08 0.19 8.14 -51.92 -0.42 -0.24 16 49 H 0.43 2.56 8.96 -40.82 -0.37 2.20 16 50 H 0.08 0.95 6.04 -51.93 -0.31 0.64 16 51 H 0.05 0.80 6.77 -51.93 -0.35 0.45 16 LS Contribution 393.48 15.07 5.93 5.93 Total: -1.00 -36.96 393.48 -10.06 -47.02 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -8.46 Total: 0.84 kcal Atomic # 6 Polarization: 14.32 SS G_CDS: -1.03 Total: 13.29 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: -1.65 Total: -61.86 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: 0.16 Total: -22.51 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.96 -10.06 -47.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363374724.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.426 kcal (2) G-P(sol) polarization free energy of solvation -36.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds