Wall clock time and date at job start Tue Mar 31 2020 21:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46880 * 2 1 4 4 C 1.50698 * 109.47325 * 119.99906 * 2 1 3 5 5 O 1.21278 * 119.99635 * 95.49282 * 4 2 1 6 6 N 1.34775 * 120.00133 * 275.49775 * 4 2 1 7 7 C 1.46501 * 119.99812 * 355.36663 * 6 4 2 8 8 C 1.46497 * 119.99761 * 175.37063 * 6 4 2 9 9 C 1.50702 * 109.47111 * 89.99984 * 8 6 4 10 10 H 1.08008 * 120.00098 * 359.97438 * 9 8 6 11 11 C 1.37875 * 119.99814 * 179.97438 * 9 8 6 12 12 N 1.31515 * 120.00544 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99827 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.46954 * 180.02562 * 13 11 9 15 15 H 1.48501 * 109.46836 * 299.99712 * 13 11 9 16 16 H 1.48494 * 109.47490 * 59.99720 * 13 11 9 17 17 N 1.46901 * 109.47325 * 240.00421 * 2 1 3 18 18 C 1.46840 * 111.00240 * 179.76343 * 17 2 1 19 19 C 1.53034 * 109.52717 * 174.15913 * 18 17 2 20 20 C 1.53124 * 109.27837 * 59.17599 * 19 18 17 21 21 C 1.53119 * 109.15966 * 302.35186 * 20 19 18 22 22 H 1.08999 * 109.53408 * 297.68703 * 21 20 19 23 23 N 1.46499 * 109.50008 * 177.59534 * 21 20 19 24 24 C 1.47058 * 125.41294 * 119.91770 * 23 21 20 25 25 C 1.54096 * 103.86393 * 179.86789 * 24 23 21 26 26 N 1.47055 * 103.86359 * 0.37206 * 25 24 23 27 27 C 1.33945 * 109.17798 * 359.75510 * 26 25 24 28 28 O 1.21588 * 123.04162 * 179.97438 * 27 26 25 29 29 C 1.46847 * 111.00049 * 55.54859 * 17 2 1 30 30 H 1.09002 * 109.47287 * 293.64426 * 1 2 3 31 31 H 1.09003 * 109.47511 * 53.64909 * 1 2 3 32 32 H 1.09004 * 109.46995 * 173.64269 * 1 2 3 33 33 H 1.08999 * 109.46906 * 275.44227 * 7 6 4 34 34 H 1.08997 * 109.47326 * 35.44458 * 7 6 4 35 35 H 1.09002 * 109.46532 * 155.44448 * 7 6 4 36 36 H 1.08998 * 109.47493 * 329.99549 * 8 6 4 37 37 H 1.09002 * 109.46916 * 209.99502 * 8 6 4 38 38 H 0.96999 * 120.00351 * 180.02562 * 12 11 9 39 39 H 1.09004 * 109.46139 * 294.17531 * 18 17 2 40 40 H 1.08999 * 109.46234 * 54.14054 * 18 17 2 41 41 H 1.09004 * 109.50273 * 299.24332 * 19 18 17 42 42 H 1.08996 * 109.50939 * 179.12027 * 19 18 17 43 43 H 1.08995 * 109.52408 * 182.44365 * 20 19 18 44 44 H 1.08996 * 109.57454 * 62.28418 * 20 19 18 45 45 H 1.09004 * 110.54316 * 298.59476 * 24 23 21 46 46 H 1.09004 * 110.54999 * 61.39630 * 24 23 21 47 47 H 1.09004 * 110.75804 * 241.67121 * 25 24 23 48 48 H 1.09007 * 110.46631 * 118.92684 * 25 24 23 49 49 H 0.96999 * 125.41160 * 179.75953 * 26 25 24 50 50 H 1.09001 * 109.46573 * 305.85952 * 29 17 2 51 51 H 1.09000 * 109.46355 * 65.82990 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.3293 -1.8849 1.1737 6 7 2.1516 -0.0405 2.3938 7 6 1.8904 1.4003 2.4396 8 6 2.5425 -0.7532 3.6126 9 6 4.0439 -0.7405 3.7423 10 1 4.6466 -0.2508 2.9917 11 6 4.6479 -1.3539 4.8193 12 7 3.9140 -1.9497 5.7336 13 14 6.5090 -1.3374 4.9805 14 1 6.9052 -2.0600 6.2158 15 1 7.1139 -2.0065 3.8007 16 1 6.9873 0.0665 5.0525 17 7 2.0197 -0.6924 -1.1995 18 6 3.4876 -0.7071 -1.2362 19 6 3.9612 -1.5581 -2.4166 20 6 3.4052 -0.9722 -3.7176 21 6 1.8771 -0.9233 -3.6340 22 1 1.4850 -1.9352 -3.5322 23 7 1.3401 -0.3108 -4.8517 24 6 0.4180 -0.9590 -5.7962 25 6 0.1779 0.1156 -6.8742 26 7 0.9974 1.2520 -6.4275 27 6 1.6154 0.9265 -5.2846 28 8 2.3595 1.6853 -4.6938 29 6 1.4640 -0.0906 -2.4183 30 1 -0.3634 0.4122 0.9414 31 1 -0.3634 0.6091 -0.8277 32 1 -0.3633 -1.0214 -0.1138 33 1 2.7901 1.9421 2.1480 34 1 1.0804 1.6447 1.7524 35 1 1.6063 1.6860 3.4524 36 1 2.1911 -1.7836 3.5596 37 1 2.0988 -0.2622 4.4787 38 1 4.3390 -2.3809 6.4914 39 1 3.8582 0.3116 -1.3511 40 1 3.8699 -1.1299 -0.3072 41 1 3.6024 -2.5803 -2.2955 42 1 5.0505 -1.5561 -2.4529 43 1 3.7042 -1.6001 -4.5568 44 1 3.7947 0.0358 -3.8598 45 1 0.8783 -1.8455 -6.2327 46 1 -0.5180 -1.2173 -5.3009 47 1 -0.8750 0.3951 -6.9133 48 1 0.5148 -0.2395 -7.8482 49 1 1.0776 2.1023 -6.8873 50 1 0.3765 -0.0657 -2.3477 51 1 1.8440 0.9251 -2.5277 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000363374724.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:37 Heat of formation + Delta-G solvation = -59.215249 kcal Electronic energy + Delta-G solvation = -31217.471701 eV Core-core repulsion = 27151.545906 eV Total energy + Delta-G solvation = -4065.925795 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.13785 -41.17216 -39.33494 -37.33782 -36.58284 -35.90545 -34.75697 -34.11748 -31.21433 -30.96234 -29.62401 -29.30196 -27.43395 -26.26803 -25.16233 -24.52333 -23.79564 -22.81082 -21.73722 -20.42238 -19.81423 -18.71920 -18.62894 -18.07996 -17.67750 -17.30149 -16.88798 -16.49181 -16.16384 -15.99459 -15.84569 -15.46566 -15.15625 -14.91177 -14.79000 -14.66623 -14.49271 -14.33825 -14.23669 -13.96725 -13.62252 -13.50908 -13.31383 -13.17629 -13.03015 -12.92601 -12.83310 -12.73475 -12.61683 -12.57482 -12.45446 -12.19835 -11.92770 -11.78999 -11.65613 -11.48901 -11.05170 -10.64853 -10.44744 -10.27436 -9.46976 -9.42427 -9.31964 -8.22971 -6.37315 1.34227 1.38479 1.45685 1.54745 1.82124 2.12911 2.25071 2.39641 2.83550 3.05972 3.13812 3.59918 3.64904 3.72370 3.73766 3.95218 4.02676 4.09530 4.17169 4.26306 4.31641 4.35138 4.41609 4.49749 4.50583 4.61706 4.66420 4.71578 4.73682 4.79463 4.80873 4.85959 4.90556 4.98710 5.01019 5.02474 5.07097 5.13909 5.20188 5.22415 5.39564 5.55252 5.71199 5.80906 5.89907 6.06077 6.06344 6.24630 6.61101 6.68912 6.78251 7.28019 7.50391 7.62657 8.83698 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.020559 B = 0.002697 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.581036 B =10378.635506 C =10914.918826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.074 3.926 3 H 0.065 0.935 4 C 0.505 3.495 5 O -0.570 6.570 6 N -0.613 5.613 7 C 0.080 3.920 8 C 0.263 3.737 9 C -0.541 4.541 10 H 0.046 0.954 11 C 0.010 3.990 12 N -0.926 5.926 13 Si 0.964 3.036 14 H -0.275 1.275 15 H -0.278 1.278 16 H -0.263 1.263 17 N -0.517 5.517 18 C 0.054 3.946 19 C -0.101 4.101 20 C -0.123 4.123 21 C 0.193 3.807 22 H 0.116 0.884 23 N -0.629 5.629 24 C 0.084 3.916 25 C 0.094 3.906 26 N -0.739 5.739 27 C 0.686 3.314 28 O -0.635 6.635 29 C 0.049 3.951 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.065 0.935 33 H 0.050 0.950 34 H 0.093 0.907 35 H 0.077 0.923 36 H -0.001 1.001 37 H 0.026 0.974 38 H 0.268 0.732 39 H 0.021 0.979 40 H 0.050 0.950 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.052 0.948 45 H 0.100 0.900 46 H 0.100 0.900 47 H 0.105 0.895 48 H 0.104 0.896 49 H 0.433 0.567 50 H 0.094 0.906 51 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.069 5.475 -28.166 31.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.038 4.038 3 H 0.083 0.917 4 C 0.293 3.707 5 O -0.449 6.449 6 N -0.345 5.345 7 C -0.063 4.063 8 C 0.142 3.858 9 C -0.580 4.580 10 H 0.064 0.936 11 C -0.189 4.189 12 N -0.566 5.566 13 Si 0.788 3.212 14 H -0.200 1.200 15 H -0.204 1.204 16 H -0.188 1.188 17 N -0.242 5.242 18 C -0.074 4.074 19 C -0.140 4.140 20 C -0.161 4.161 21 C 0.090 3.910 22 H 0.134 0.866 23 N -0.367 5.367 24 C -0.038 4.038 25 C -0.029 4.029 26 N -0.401 5.401 27 C 0.386 3.614 28 O -0.517 6.517 29 C -0.079 4.079 30 H 0.094 0.906 31 H 0.109 0.891 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.111 0.889 35 H 0.096 0.904 36 H 0.017 0.983 37 H 0.044 0.956 38 H 0.077 0.923 39 H 0.040 0.960 40 H 0.068 0.932 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.099 0.901 44 H 0.071 0.929 45 H 0.118 0.882 46 H 0.118 0.882 47 H 0.123 0.877 48 H 0.122 0.878 49 H 0.275 0.725 50 H 0.113 0.887 51 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -11.689 4.564 -27.571 30.292 hybrid contribution 1.567 1.099 0.581 2.000 sum -10.121 5.663 -26.990 29.376 Atomic orbital electron populations 1.21794 0.89726 1.03659 1.03786 1.21599 0.98840 0.95375 0.87965 0.91705 1.20925 0.77781 0.87154 0.84862 1.90626 1.50771 1.18527 1.84984 1.48185 1.66886 1.10133 1.09332 1.21920 1.01185 0.79181 1.03991 1.18764 0.94233 0.91329 0.81512 1.21624 0.93006 1.35729 1.07649 0.93555 1.25809 1.03482 0.94449 0.95192 1.70028 1.37458 1.36669 1.12460 0.85529 0.79322 0.78840 0.77498 1.19970 1.20411 1.18751 1.61617 1.07820 1.53988 1.00816 1.22076 0.87570 0.98050 0.99734 1.21425 1.00531 0.99574 0.92449 1.21885 0.95243 1.01333 0.97686 1.20641 0.93141 0.96737 0.80523 0.86584 1.47287 1.50105 1.14111 1.25181 1.22778 0.94571 0.97123 0.89318 1.22620 0.97407 0.84426 0.98497 1.45177 1.50577 1.19222 1.25141 1.16300 0.80507 0.82673 0.81954 1.90922 1.43326 1.55069 1.62407 1.22467 1.00712 0.96204 0.88499 0.90631 0.89079 0.91623 0.93176 0.88909 0.90375 0.98300 0.95596 0.92333 0.96037 0.93155 0.90663 0.90643 0.90059 0.92900 0.88222 0.88170 0.87702 0.87807 0.72475 0.88743 0.95241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 8.33 71.98 0.60 -2.68 16 2 C 0.07 2.42 1.64 44.17 0.07 2.49 16 3 H 0.07 2.01 6.84 -2.38 -0.02 1.99 16 4 C 0.51 22.35 5.86 87.66 0.51 22.86 16 5 O -0.57 -30.81 15.02 -3.02 -0.05 -30.85 16 6 N -0.61 -27.53 2.86 -851.14 -2.43 -29.96 16 7 C 0.08 2.61 9.85 127.77 1.26 3.87 16 8 C 0.26 14.67 5.17 85.63 0.44 15.11 16 9 C -0.54 -32.44 9.39 25.60 0.24 -32.20 16 10 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 11 C 0.01 0.58 5.46 84.65 0.46 1.04 16 12 N -0.93 -57.12 13.29 21.45 0.28 -56.83 16 13 Si 0.96 46.40 29.54 68.60 2.03 48.42 16 14 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 15 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 16 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 17 N -0.52 -16.47 4.23 -875.54 -3.71 -20.17 16 18 C 0.05 1.88 5.14 86.33 0.44 2.32 16 19 C -0.10 -2.84 6.09 30.65 0.19 -2.65 16 20 C -0.12 -2.97 5.33 30.68 0.16 -2.80 16 21 C 0.19 4.12 2.94 45.04 0.13 4.25 16 22 H 0.12 2.14 8.10 -2.39 -0.02 2.12 16 23 N -0.63 -10.92 2.85 -813.98 -2.32 -13.24 16 24 C 0.08 0.58 7.65 86.64 0.66 1.24 16 25 C 0.09 0.38 8.06 86.64 0.70 1.08 16 26 N -0.74 -9.38 6.37 -477.34 -3.04 -12.42 16 27 C 0.69 15.16 8.06 179.57 1.45 16.61 16 28 O -0.64 -20.68 14.97 -3.99 -0.06 -20.74 16 29 C 0.05 1.27 4.44 86.32 0.38 1.65 16 30 H 0.07 1.75 7.17 -2.39 -0.02 1.73 16 31 H 0.09 1.73 6.59 -2.39 -0.02 1.71 16 32 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.09 2.31 5.58 -2.39 -0.01 2.30 16 35 H 0.08 2.44 7.83 -2.39 -0.02 2.42 16 36 H 0.00 -0.07 7.49 -2.39 -0.02 -0.09 16 37 H 0.03 1.45 7.86 -2.39 -0.02 1.43 16 38 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 39 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 40 H 0.05 2.19 6.16 -2.39 -0.01 2.18 16 41 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 42 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.05 1.58 6.71 -2.39 -0.02 1.56 16 45 H 0.10 0.38 8.14 -2.38 -0.02 0.36 16 46 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 47 H 0.10 0.00 8.14 -2.39 -0.02 -0.02 16 48 H 0.10 0.00 8.14 -2.38 -0.02 -0.02 16 49 H 0.43 4.36 8.96 -92.71 -0.83 3.53 16 50 H 0.09 2.07 6.04 -2.39 -0.01 2.06 16 51 H 0.03 0.91 6.77 -2.39 -0.02 0.89 16 Total: -1.00 -86.30 393.48 -1.48 -87.78 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.10 Total: 15.80 kcal Atomic # 6 Polarization: 24.50 SS G_CDS: 7.71 Total: 32.21 kcal Atomic # 7 Polarization: -121.41 SS G_CDS: -11.21 Total: -132.63 kcal Atomic # 8 Polarization: -51.48 SS G_CDS: -0.11 Total: -51.59 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.42 kcal Total: -86.30 -1.48 -87.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363374724.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.569 kcal (2) G-P(sol) polarization free energy of solvation -86.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds