Wall clock time and date at job start Tue Mar 31 2020 21:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47263 * 2 1 4 4 C 1.46502 * 120.00234 * 270.00444 * 3 2 1 5 5 C 1.50690 * 109.47018 * 269.99859 * 4 3 2 6 6 H 1.08002 * 120.00271 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00211 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00168 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00341 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47003 * 90.00127 * 9 7 5 11 11 H 1.48494 * 109.47322 * 210.00066 * 9 7 5 12 12 H 1.48502 * 109.47243 * 330.00476 * 9 7 5 13 13 C 1.34778 * 119.99993 * 89.99606 * 3 2 1 14 14 O 1.21280 * 120.00114 * 179.97438 * 13 3 2 15 15 C 1.50698 * 119.99733 * 0.02562 * 13 3 2 16 16 N 1.46904 * 109.47204 * 183.39740 * 15 13 3 17 17 C 1.46856 * 110.99935 * 293.32764 * 16 15 13 18 18 C 1.53141 * 109.45792 * 173.65805 * 17 16 15 19 19 C 1.52574 * 109.31257 * 58.29303 * 18 17 16 20 20 C 1.53633 * 110.29975 * 181.46165 * 19 18 17 21 21 N 1.47189 * 103.66468 * 241.14807 * 20 19 18 22 22 C 1.34019 * 109.15085 * 359.97438 * 21 20 19 23 23 O 1.21585 * 123.06601 * 180.02562 * 22 21 20 24 24 N 1.34119 * 113.87351 * 0.02562 * 22 21 20 25 25 C 1.46502 * 125.51708 * 180.02562 * 24 22 21 26 26 C 1.52573 * 110.44833 * 303.65391 * 19 18 17 27 27 C 1.46846 * 111.00287 * 168.97013 * 16 15 13 28 28 H 1.09005 * 109.47272 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47050 * 299.99821 * 1 2 3 30 30 H 1.09002 * 109.47128 * 59.99675 * 1 2 3 31 31 H 1.09006 * 109.47140 * 240.00408 * 2 1 3 32 32 H 1.08997 * 109.47487 * 120.00590 * 2 1 3 33 33 H 1.08998 * 109.46749 * 29.99678 * 4 3 2 34 34 H 1.08998 * 109.47328 * 149.99785 * 4 3 2 35 35 H 0.96992 * 120.00757 * 179.97438 * 8 7 5 36 36 H 1.09000 * 109.47701 * 63.39412 * 15 13 3 37 37 H 1.09003 * 109.47082 * 303.39403 * 15 13 3 38 38 H 1.09002 * 109.47116 * 293.65174 * 17 16 15 39 39 H 1.09002 * 109.47791 * 53.65399 * 17 16 15 40 40 H 1.09001 * 109.49601 * 178.24699 * 18 17 16 41 41 H 1.09002 * 109.49364 * 298.34315 * 18 17 16 42 42 H 1.08999 * 110.58279 * 359.69086 * 20 19 18 43 43 H 1.08996 * 110.58655 * 122.44689 * 20 19 18 44 44 H 0.97002 * 125.42306 * 179.97438 * 21 20 19 45 45 H 1.08997 * 109.47189 * 179.78771 * 25 24 22 46 46 H 1.09006 * 109.47173 * 299.79471 * 25 24 22 47 47 H 1.09006 * 109.46956 * 59.78780 * 25 24 22 48 48 H 1.09000 * 109.49597 * 296.39096 * 26 19 18 49 49 H 1.08997 * 109.51519 * 176.31331 * 26 19 18 50 50 H 1.08993 * 109.47514 * 306.33507 * 27 16 15 51 51 H 1.09000 * 109.46612 * 66.34138 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6856 1.8351 -1.7038 6 1 4.3428 1.2309 -1.0959 7 6 4.1490 2.3897 -2.8780 8 7 3.3490 3.1259 -3.6181 9 14 5.9134 2.0968 -3.4170 10 1 5.9773 0.8755 -4.2593 11 1 6.3919 3.2640 -4.2004 12 1 6.7735 1.9180 -2.2197 13 6 2.2429 2.0166 1.1672 14 8 2.6477 3.1598 1.1672 15 6 1.9922 1.3060 2.4723 16 7 2.2321 2.2313 3.5877 17 6 3.6518 2.5977 3.6715 18 6 3.8372 3.6797 4.7393 19 6 3.3285 3.1581 6.0798 20 6 3.4705 4.2400 7.1613 21 7 4.3815 3.6316 8.1443 22 6 4.7232 2.4049 7.7266 23 8 5.4694 1.6755 8.3508 24 7 4.1672 2.0550 6.5574 25 6 4.3652 0.7769 5.8693 26 6 1.8732 2.7152 5.9619 27 6 1.7516 1.6647 4.8543 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.5816 1.6878 -2.0283 34 1 2.0955 3.1411 -1.1384 35 1 3.6749 3.5164 -4.4439 36 1 2.6654 0.4528 2.5567 37 1 0.9595 0.9585 2.5042 38 1 4.2387 1.7189 3.9388 39 1 3.9865 2.9783 2.7065 40 1 4.8948 3.9299 4.8238 41 1 3.2738 4.5692 4.4575 42 1 3.9086 5.1457 6.7420 43 1 2.5036 4.4578 7.6148 44 1 4.6860 4.0516 8.9640 45 1 3.7887 0.7690 4.9443 46 1 5.4230 0.6481 5.6395 47 1 4.0314 -0.0375 6.5125 48 1 1.2499 3.5753 5.7176 49 1 1.5455 2.2855 6.9085 50 1 0.7081 1.3687 4.7473 51 1 2.3520 0.7925 5.1131 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425541820.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:58 Heat of formation + Delta-G solvation = -12.152927 kcal Electronic energy + Delta-G solvation = -31425.746011 eV Core-core repulsion = 27361.860991 eV Total energy + Delta-G solvation = -4063.885019 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.88420 -39.52717 -38.24613 -36.29854 -35.24174 -34.19941 -32.87794 -32.34373 -31.09329 -30.11716 -28.95979 -27.40993 -26.77378 -25.20961 -23.51654 -23.04786 -22.53068 -21.76875 -21.00110 -20.23906 -18.34067 -17.32790 -16.64465 -16.41325 -16.36449 -16.09781 -15.95074 -15.40597 -15.11976 -14.83639 -14.50188 -14.26802 -14.15580 -13.93475 -13.87710 -13.56897 -13.36558 -13.15248 -12.86716 -12.71483 -12.69552 -12.64963 -12.11539 -11.95760 -11.91425 -11.51104 -11.40335 -11.22560 -11.11097 -10.92641 -10.86812 -10.74322 -10.64937 -10.52128 -10.21663 -10.10762 -9.64399 -9.47871 -8.90932 -8.71624 -8.45204 -8.09032 -7.65712 -6.05961 -4.10832 2.41992 2.99269 3.28138 3.35018 3.37484 3.42691 3.55236 3.66302 4.00634 4.16384 4.37944 4.43547 4.51613 4.70579 4.92686 4.96874 5.06669 5.10908 5.18365 5.20997 5.25888 5.28347 5.32427 5.37375 5.38928 5.45861 5.50686 5.55430 5.61859 5.69622 5.74771 5.77069 5.79321 5.90009 5.99850 6.10755 6.20135 6.25708 6.45482 6.53889 6.88052 6.91214 7.08429 7.14521 7.32905 7.44725 7.54852 7.90787 8.22204 8.43029 8.43924 8.89241 9.11646 9.54576 11.01979 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014735 B = 0.002967 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.792350 B = 9433.894610 C =10314.221821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.056 0.944 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.507 3.493 14 O -0.524 6.524 15 C 0.037 3.963 16 N -0.518 5.518 17 C 0.035 3.965 18 C -0.111 4.111 19 C 0.147 3.853 20 C 0.101 3.899 21 N -0.743 5.743 22 C 0.699 3.301 23 O -0.592 6.592 24 N -0.620 5.620 25 C 0.101 3.899 26 C -0.112 4.112 27 C 0.040 3.960 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.031 0.969 34 H 0.043 0.957 35 H 0.263 0.737 36 H 0.056 0.944 37 H 0.097 0.903 38 H 0.040 0.960 39 H 0.108 0.892 40 H 0.072 0.928 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.427 0.573 45 H 0.099 0.901 46 H 0.060 0.940 47 H 0.059 0.941 48 H 0.089 0.911 49 H 0.072 0.928 50 H 0.078 0.922 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.029 -2.875 19.585 20.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.129 3.871 5 C -0.565 4.565 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.293 3.707 14 O -0.400 6.400 15 C -0.094 4.094 16 N -0.243 5.243 17 C -0.092 4.092 18 C -0.150 4.150 19 C 0.061 3.939 20 C -0.024 4.024 21 N -0.405 5.405 22 C 0.399 3.601 23 O -0.471 6.471 24 N -0.358 5.358 25 C -0.040 4.040 26 C -0.151 4.151 27 C -0.088 4.088 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.115 0.885 38 H 0.057 0.943 39 H 0.126 0.874 40 H 0.090 0.910 41 H 0.109 0.891 42 H 0.104 0.896 43 H 0.102 0.898 44 H 0.268 0.732 45 H 0.117 0.883 46 H 0.079 0.921 47 H 0.078 0.922 48 H 0.108 0.892 49 H 0.090 0.910 50 H 0.097 0.903 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.683 -2.258 19.510 20.446 hybrid contribution 1.406 -0.731 -0.029 1.585 sum -4.277 -2.989 19.481 20.168 Atomic orbital electron populations 1.22225 0.96797 1.01346 1.02382 1.21398 0.93509 0.84344 1.02519 1.48266 1.64039 1.13151 1.07729 1.19237 0.96118 0.93649 0.78090 1.21423 0.96964 1.31859 1.06209 0.92591 1.24926 0.97764 0.94932 0.96430 1.69927 1.35677 1.33404 1.14321 0.86527 0.84769 0.77689 0.78602 1.20671 1.21087 1.19944 1.20089 0.78865 0.87073 0.84684 1.90626 1.44941 1.17732 1.86726 1.22067 1.02449 0.93979 0.90951 1.61538 1.19074 1.41669 1.02023 1.22595 0.87467 0.97389 1.01720 1.21841 1.01511 0.99757 0.91871 1.21048 0.91929 0.86000 0.94921 1.22447 0.94916 0.96380 0.88657 1.45148 1.52373 1.16890 1.26113 1.15957 0.80443 0.82202 0.81459 1.90946 1.40928 1.55192 1.60016 1.47027 1.49877 1.16777 1.22147 1.22033 1.02266 0.82350 0.97336 1.21841 0.94334 1.00482 0.98441 1.22405 1.00895 0.96108 0.89356 0.92250 0.93046 0.91997 0.89994 0.92012 0.95145 0.93875 0.92723 0.92658 0.88527 0.94258 0.87369 0.90986 0.89099 0.89611 0.89770 0.73181 0.88269 0.92089 0.92240 0.89224 0.90977 0.90340 0.93573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 10.20 37.16 0.38 -1.72 16 2 C 0.11 1.59 5.88 -4.04 -0.02 1.56 16 3 N -0.60 -11.91 2.46 -175.06 -0.43 -12.34 16 4 C 0.25 6.27 5.16 -5.20 -0.03 6.24 16 5 C -0.53 -14.50 9.39 -34.45 -0.32 -14.82 16 6 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.18 13.29 55.43 0.74 -25.45 16 9 Si 0.90 21.54 29.54 -169.99 -5.02 16.51 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 13 C 0.51 9.76 7.41 -10.99 -0.08 9.68 16 14 O -0.52 -12.25 13.82 5.56 0.08 -12.17 16 15 C 0.04 0.49 3.95 -4.97 -0.02 0.47 16 16 N -0.52 -6.54 4.39 -235.97 -1.04 -7.58 16 17 C 0.04 0.47 4.79 -3.78 -0.02 0.45 16 18 C -0.11 -1.21 4.90 -26.88 -0.13 -1.35 16 19 C 0.15 1.35 0.87 -131.89 -0.12 1.24 16 20 C 0.10 0.73 7.34 -3.34 -0.02 0.71 16 21 N -0.74 -6.81 6.38 -64.80 -0.41 -7.22 16 22 C 0.70 9.09 8.61 -88.18 -0.76 8.33 16 23 O -0.59 -10.16 17.70 5.29 0.09 -10.07 16 24 N -0.62 -6.90 2.81 -172.80 -0.49 -7.39 16 25 C 0.10 1.06 8.34 59.85 0.50 1.56 16 26 C -0.11 -0.92 4.90 -26.88 -0.13 -1.05 16 27 C 0.04 0.37 5.15 -3.78 -0.02 0.35 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.60 7.15 -51.93 -0.37 0.23 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.08 1.29 8.07 -51.93 -0.42 0.88 16 32 H 0.06 0.75 6.54 -51.93 -0.34 0.41 16 33 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 34 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 35 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.06 0.67 7.55 -51.93 -0.39 0.28 16 37 H 0.10 1.10 6.81 -51.93 -0.35 0.75 16 38 H 0.04 0.49 4.55 -51.93 -0.24 0.26 16 39 H 0.11 1.89 5.74 -51.93 -0.30 1.59 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.09 0.53 7.71 -51.93 -0.40 0.13 16 43 H 0.08 0.45 7.71 -51.93 -0.40 0.05 16 44 H 0.43 3.07 8.96 -40.82 -0.37 2.71 16 45 H 0.10 0.97 2.69 -51.93 -0.14 0.83 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.08 0.66 7.99 -51.93 -0.42 0.24 16 51 H 0.05 0.42 4.53 -51.93 -0.24 0.18 16 LS Contribution 386.81 15.07 5.83 5.83 Total: -1.00 -35.49 386.81 -9.64 -45.13 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -8.10 Total: 1.46 kcal Atomic # 6 Polarization: 14.16 SS G_CDS: -0.89 Total: 13.27 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: -1.63 Total: -59.97 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: 0.17 Total: -22.24 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.49 -9.64 -45.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425541820.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.982 kcal (2) G-P(sol) polarization free energy of solvation -35.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds