Wall clock time and date at job start Tue Mar 31 2020 21:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47263 * 2 1 4 4 C 1.46502 * 120.00234 * 270.00444 * 3 2 1 5 5 C 1.50690 * 109.47018 * 269.99859 * 4 3 2 6 6 H 1.08002 * 120.00271 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00211 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00168 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00341 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47003 * 90.00127 * 9 7 5 11 11 H 1.48494 * 109.47322 * 210.00066 * 9 7 5 12 12 H 1.48502 * 109.47243 * 330.00476 * 9 7 5 13 13 C 1.34778 * 119.99993 * 89.99606 * 3 2 1 14 14 O 1.21280 * 120.00114 * 179.97438 * 13 3 2 15 15 C 1.50698 * 119.99733 * 0.02562 * 13 3 2 16 16 N 1.46904 * 109.47204 * 183.39740 * 15 13 3 17 17 C 1.46856 * 110.99935 * 293.32764 * 16 15 13 18 18 C 1.53141 * 109.45792 * 173.65805 * 17 16 15 19 19 C 1.52574 * 109.31257 * 58.29303 * 18 17 16 20 20 C 1.53633 * 110.29975 * 181.46165 * 19 18 17 21 21 N 1.47189 * 103.66468 * 241.14807 * 20 19 18 22 22 C 1.34019 * 109.15085 * 359.97438 * 21 20 19 23 23 O 1.21585 * 123.06601 * 180.02562 * 22 21 20 24 24 N 1.34119 * 113.87351 * 0.02562 * 22 21 20 25 25 C 1.46502 * 125.51708 * 180.02562 * 24 22 21 26 26 C 1.52573 * 110.44833 * 303.65391 * 19 18 17 27 27 C 1.46846 * 111.00287 * 168.97013 * 16 15 13 28 28 H 1.09005 * 109.47272 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47050 * 299.99821 * 1 2 3 30 30 H 1.09002 * 109.47128 * 59.99675 * 1 2 3 31 31 H 1.09006 * 109.47140 * 240.00408 * 2 1 3 32 32 H 1.08997 * 109.47487 * 120.00590 * 2 1 3 33 33 H 1.08998 * 109.46749 * 29.99678 * 4 3 2 34 34 H 1.08998 * 109.47328 * 149.99785 * 4 3 2 35 35 H 0.96992 * 120.00757 * 179.97438 * 8 7 5 36 36 H 1.09000 * 109.47701 * 63.39412 * 15 13 3 37 37 H 1.09003 * 109.47082 * 303.39403 * 15 13 3 38 38 H 1.09002 * 109.47116 * 293.65174 * 17 16 15 39 39 H 1.09002 * 109.47791 * 53.65399 * 17 16 15 40 40 H 1.09001 * 109.49601 * 178.24699 * 18 17 16 41 41 H 1.09002 * 109.49364 * 298.34315 * 18 17 16 42 42 H 1.08999 * 110.58279 * 359.69086 * 20 19 18 43 43 H 1.08996 * 110.58655 * 122.44689 * 20 19 18 44 44 H 0.97002 * 125.42306 * 179.97438 * 21 20 19 45 45 H 1.08997 * 109.47189 * 179.78771 * 25 24 22 46 46 H 1.09006 * 109.47173 * 299.79471 * 25 24 22 47 47 H 1.09006 * 109.46956 * 59.78780 * 25 24 22 48 48 H 1.09000 * 109.49597 * 296.39096 * 26 19 18 49 49 H 1.08997 * 109.51519 * 176.31331 * 26 19 18 50 50 H 1.08993 * 109.47514 * 306.33507 * 27 16 15 51 51 H 1.09000 * 109.46612 * 66.34138 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6856 1.8351 -1.7038 6 1 4.3428 1.2309 -1.0959 7 6 4.1490 2.3897 -2.8780 8 7 3.3490 3.1259 -3.6181 9 14 5.9134 2.0968 -3.4170 10 1 5.9773 0.8755 -4.2593 11 1 6.3919 3.2640 -4.2004 12 1 6.7735 1.9180 -2.2197 13 6 2.2429 2.0166 1.1672 14 8 2.6477 3.1598 1.1672 15 6 1.9922 1.3060 2.4723 16 7 2.2321 2.2313 3.5877 17 6 3.6518 2.5977 3.6715 18 6 3.8372 3.6797 4.7393 19 6 3.3285 3.1581 6.0798 20 6 3.4705 4.2400 7.1613 21 7 4.3815 3.6316 8.1443 22 6 4.7232 2.4049 7.7266 23 8 5.4694 1.6755 8.3508 24 7 4.1672 2.0550 6.5574 25 6 4.3652 0.7769 5.8693 26 6 1.8732 2.7152 5.9619 27 6 1.7516 1.6647 4.8543 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.5816 1.6878 -2.0283 34 1 2.0955 3.1411 -1.1384 35 1 3.6749 3.5164 -4.4439 36 1 2.6654 0.4528 2.5567 37 1 0.9595 0.9585 2.5042 38 1 4.2387 1.7189 3.9388 39 1 3.9865 2.9783 2.7065 40 1 4.8948 3.9299 4.8238 41 1 3.2738 4.5692 4.4575 42 1 3.9086 5.1457 6.7420 43 1 2.5036 4.4578 7.6148 44 1 4.6860 4.0516 8.9640 45 1 3.7887 0.7690 4.9443 46 1 5.4230 0.6481 5.6395 47 1 4.0314 -0.0375 6.5125 48 1 1.2499 3.5753 5.7176 49 1 1.5455 2.2855 6.9085 50 1 0.7081 1.3687 4.7473 51 1 2.3520 0.7925 5.1131 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425541820.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:57 Heat of formation + Delta-G solvation = -39.509727 kcal Electronic energy + Delta-G solvation = -31426.932291 eV Core-core repulsion = 27361.860991 eV Total energy + Delta-G solvation = -4065.071299 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.72083 -40.85470 -39.37750 -37.35284 -36.74237 -35.09130 -34.84761 -33.32265 -31.92591 -31.56824 -30.13094 -28.76821 -27.82210 -26.39060 -24.66437 -24.34827 -23.87038 -22.70851 -21.90807 -21.05015 -19.81511 -18.60124 -18.21989 -17.83624 -17.31972 -17.23505 -16.96143 -16.57369 -16.46231 -16.01685 -15.78704 -15.37633 -15.26813 -14.89312 -14.75675 -14.61730 -14.47090 -14.41278 -14.17265 -13.70274 -13.62891 -13.58542 -13.50195 -13.29389 -13.13576 -12.91408 -12.80881 -12.62829 -12.44463 -12.21517 -12.13127 -12.05442 -11.87437 -11.71750 -11.62039 -11.56266 -11.18073 -10.63071 -10.40765 -10.33490 -9.52462 -9.35124 -9.07127 -8.20844 -6.35537 1.35852 1.38515 1.48442 1.62278 1.94781 2.04148 2.26545 2.42386 2.91237 3.02826 3.08421 3.31870 3.66070 3.71872 3.78444 3.90104 4.12819 4.17232 4.18882 4.33231 4.41530 4.43920 4.47126 4.51129 4.53646 4.58372 4.59484 4.70096 4.73830 4.76332 4.95489 4.97458 4.99030 5.03152 5.04488 5.10089 5.15038 5.18070 5.26271 5.28338 5.43776 5.61267 5.67555 5.90273 5.99852 6.09788 6.18403 6.21194 6.48153 6.73563 6.90884 7.31400 7.53848 7.61515 8.85714 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014735 B = 0.002967 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.792350 B = 9433.894610 C =10314.221821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.607 5.607 4 C 0.266 3.734 5 C -0.539 4.539 6 H 0.052 0.948 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.964 3.036 10 H -0.264 1.264 11 H -0.282 1.282 12 H -0.274 1.274 13 C 0.496 3.504 14 O -0.576 6.576 15 C 0.051 3.949 16 N -0.530 5.530 17 C 0.040 3.960 18 C -0.105 4.105 19 C 0.148 3.852 20 C 0.103 3.897 21 N -0.732 5.732 22 C 0.689 3.311 23 O -0.642 6.642 24 N -0.620 5.620 25 C 0.100 3.900 26 C -0.107 4.107 27 C 0.039 3.961 28 H 0.094 0.906 29 H 0.063 0.937 30 H 0.035 0.965 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.018 0.982 34 H -0.004 1.004 35 H 0.266 0.734 36 H 0.076 0.924 37 H 0.129 0.871 38 H 0.046 0.954 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.089 0.911 42 H 0.098 0.902 43 H 0.115 0.885 44 H 0.436 0.564 45 H 0.108 0.892 46 H 0.048 0.952 47 H 0.066 0.934 48 H 0.099 0.901 49 H 0.089 0.911 50 H 0.098 0.902 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.056 -4.231 21.585 23.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.339 5.339 4 C 0.144 3.856 5 C -0.578 4.578 6 H 0.070 0.930 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.789 3.211 10 H -0.189 1.189 11 H -0.207 1.207 12 H -0.199 1.199 13 C 0.284 3.716 14 O -0.456 6.456 15 C -0.080 4.080 16 N -0.256 5.256 17 C -0.088 4.088 18 C -0.144 4.144 19 C 0.062 3.938 20 C -0.022 4.022 21 N -0.393 5.393 22 C 0.389 3.611 23 O -0.525 6.525 24 N -0.357 5.357 25 C -0.041 4.041 26 C -0.146 4.146 27 C -0.087 4.087 28 H 0.112 0.888 29 H 0.082 0.918 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.118 0.882 33 H 0.036 0.964 34 H 0.014 0.986 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.146 0.854 38 H 0.063 0.937 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.108 0.892 42 H 0.117 0.883 43 H 0.133 0.867 44 H 0.279 0.721 45 H 0.125 0.875 46 H 0.066 0.934 47 H 0.085 0.915 48 H 0.118 0.882 49 H 0.107 0.893 50 H 0.117 0.883 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.760 -3.627 21.524 22.851 hybrid contribution 1.693 -0.272 -0.677 1.843 sum -5.067 -3.898 20.847 21.806 Atomic orbital electron populations 1.22151 0.94562 1.03390 1.01739 1.21717 0.95316 0.81480 1.03701 1.48291 1.64392 1.15016 1.06233 1.18616 0.94934 0.91478 0.80562 1.21709 0.97986 1.31735 1.06349 0.92998 1.25821 1.02130 0.94573 0.96542 1.70047 1.37708 1.34291 1.14798 0.85471 0.79321 0.78147 0.78195 1.18912 1.20739 1.19859 1.21210 0.77361 0.86748 0.86243 1.90605 1.47001 1.20324 1.87652 1.21987 1.04670 0.93600 0.87720 1.61483 1.18415 1.42335 1.03335 1.22406 0.88296 0.98148 0.99901 1.21761 1.01148 0.99030 0.92455 1.21140 0.92326 0.86028 0.94288 1.22648 0.96079 0.95766 0.87660 1.45125 1.51970 1.15664 1.26561 1.16251 0.80229 0.82890 0.81729 1.90904 1.43163 1.56876 1.61508 1.47113 1.49742 1.17230 1.21602 1.22060 1.01698 0.82573 0.97737 1.21849 0.93269 1.00680 0.98762 1.22537 1.01947 0.96551 0.87707 0.88763 0.91784 0.94566 0.91398 0.88220 0.96411 0.98635 0.92483 0.90586 0.85369 0.93670 0.92217 0.91825 0.89246 0.88342 0.86681 0.72117 0.87461 0.93373 0.91532 0.88244 0.89301 0.88330 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.62 10.20 71.98 0.73 -2.88 16 2 C 0.10 2.84 5.88 86.38 0.51 3.34 16 3 N -0.61 -24.53 2.46 -826.17 -2.03 -26.55 16 4 C 0.27 14.13 5.16 85.63 0.44 14.58 16 5 C -0.54 -30.78 9.39 25.60 0.24 -30.53 16 6 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 7 C 0.01 0.47 5.46 84.65 0.46 0.93 16 8 N -0.93 -56.11 13.29 21.45 0.28 -55.83 16 9 Si 0.96 44.84 29.54 68.60 2.03 46.86 16 10 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 13 C 0.50 19.27 7.41 87.66 0.65 19.92 16 14 O -0.58 -28.28 13.82 -3.03 -0.04 -28.32 16 15 C 0.05 1.25 3.95 85.56 0.34 1.59 16 16 N -0.53 -12.36 4.39 -900.48 -3.95 -16.31 16 17 C 0.04 1.05 4.79 86.36 0.41 1.47 16 18 C -0.11 -2.22 4.90 30.50 0.15 -2.07 16 19 C 0.15 2.36 0.87 3.52 0.00 2.36 16 20 C 0.10 1.16 7.34 86.46 0.63 1.80 16 21 N -0.73 -11.85 6.38 -477.60 -3.05 -14.90 16 22 C 0.69 17.06 8.61 179.50 1.55 18.61 16 23 O -0.64 -21.93 17.70 -3.98 -0.07 -22.00 16 24 N -0.62 -12.76 2.81 -819.26 -2.30 -15.06 16 25 C 0.10 1.96 8.34 127.77 1.07 3.02 16 26 C -0.11 -1.36 4.90 30.50 0.15 -1.21 16 27 C 0.04 0.58 5.15 86.36 0.44 1.03 16 28 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 29 H 0.06 1.29 7.15 -2.39 -0.02 1.27 16 30 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 2.11 8.07 -2.38 -0.02 2.09 16 32 H 0.10 2.07 6.54 -2.39 -0.02 2.05 16 33 H 0.02 0.97 8.07 -2.39 -0.02 0.95 16 34 H 0.00 -0.28 7.42 -2.39 -0.02 -0.29 16 35 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 36 H 0.08 1.59 7.55 -2.39 -0.02 1.58 16 37 H 0.13 2.37 6.81 -2.39 -0.02 2.35 16 38 H 0.05 1.11 4.55 -2.39 -0.01 1.10 16 39 H 0.06 2.19 5.74 -2.39 -0.01 2.18 16 40 H 0.06 1.42 8.14 -2.39 -0.02 1.41 16 41 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.10 0.93 7.71 -2.39 -0.02 0.91 16 43 H 0.12 0.70 7.71 -2.39 -0.02 0.68 16 44 H 0.44 5.42 8.96 -92.71 -0.83 4.58 16 45 H 0.11 1.88 2.69 -2.39 -0.01 1.87 16 46 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 47 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 48 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 50 H 0.10 1.15 7.99 -2.39 -0.02 1.13 16 51 H 0.05 0.75 4.53 -2.39 -0.01 0.74 16 Total: -1.00 -83.38 386.81 -1.23 -84.61 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.12 Total: 15.55 kcal Atomic # 6 Polarization: 24.17 SS G_CDS: 7.78 Total: 31.95 kcal Atomic # 7 Polarization: -117.61 SS G_CDS: -11.05 Total: -128.65 kcal Atomic # 8 Polarization: -50.20 SS G_CDS: -0.11 Total: -50.32 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -83.38 -1.23 -84.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425541820.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.099 kcal (2) G-P(sol) polarization free energy of solvation -83.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds