Wall clock time and date at job start Tue Mar 31 2020 21:20:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 N 1.46901 * 109.46902 * 2 1
4 4 C 1.46906 * 110.99826 * 170.00304 * 3 2 1
5 5 C 1.53243 * 109.33920 * 187.25484 * 4 3 2
6 6 N 1.47076 * 108.52005 * 306.16776 * 5 4 3
7 7 C 1.34774 * 120.87992 * 231.18752 * 6 5 4
8 8 O 1.21353 * 119.99728 * 181.62138 * 7 6 5
9 9 C 1.49443 * 120.00068 * 1.34487 * 7 6 5
10 10 O 1.21353 * 120.00082 * 354.09329 * 9 7 6
11 11 N 1.34774 * 120.00133 * 174.09375 * 9 7 6
12 12 C 1.46504 * 120.00411 * 180.02562 * 11 9 7
13 13 C 1.53039 * 109.45949 * 275.06940 * 12 11 9
14 14 C 1.53186 * 109.31434 * 178.61287 * 13 12 11
15 15 N 1.46927 * 108.77853 * 54.63320 * 14 13 12
16 16 C 1.36936 * 120.63243 * 126.41256 * 15 14 13
17 17 H 1.08005 * 119.99981 * 329.54998 * 16 15 14
18 18 C 1.38811 * 120.00141 * 149.54532 * 16 15 14
19 19 N 1.31615 * 119.99793 * 350.30944 * 18 16 15
20 20 Si 1.86792 * 120.00045 * 170.30321 * 18 16 15
21 21 H 1.48509 * 109.47138 * 90.00460 * 20 18 16
22 22 H 1.48505 * 109.47200 * 210.00010 * 20 18 16
23 23 H 1.48496 * 109.47306 * 330.00461 * 20 18 16
24 24 C 1.46927 * 118.73472 * 306.39274 * 15 14 13
25 25 C 1.53038 * 109.46275 * 154.99995 * 12 11 9
26 26 C 1.47082 * 118.23924 * 51.45882 * 6 5 4
27 27 C 1.46903 * 111.00099 * 294.29907 * 3 2 1
28 28 H 1.09003 * 109.47230 * 60.00166 * 1 2 3
29 29 H 1.08996 * 109.46928 * 179.97438 * 1 2 3
30 30 H 1.08995 * 109.47279 * 299.99982 * 1 2 3
31 31 H 1.09008 * 109.46961 * 240.00199 * 2 1 3
32 32 H 1.08994 * 109.47321 * 120.00404 * 2 1 3
33 33 H 1.09004 * 109.49244 * 67.29289 * 4 3 2
34 34 H 1.09000 * 109.49183 * 307.21308 * 4 3 2
35 35 H 1.08998 * 109.62358 * 186.45842 * 5 4 3
36 36 H 1.08995 * 109.62557 * 65.88160 * 5 4 3
37 37 H 0.97007 * 120.00414 * 359.97438 * 11 9 7
38 38 H 1.08999 * 109.45931 * 35.02600 * 12 11 9
39 39 H 1.09003 * 109.49927 * 298.56309 * 13 12 11
40 40 H 1.09003 * 109.49881 * 58.65871 * 13 12 11
41 41 H 1.08999 * 109.58629 * 294.84550 * 14 13 12
42 42 H 1.09004 * 109.70714 * 174.49226 * 14 13 12
43 43 H 0.96998 * 120.00034 * 179.97438 * 19 18 16
44 44 H 1.08991 * 109.58746 * 293.82059 * 24 15 14
45 45 H 1.09005 * 109.70112 * 173.46106 * 24 15 14
46 46 H 1.08998 * 109.49490 * 301.33507 * 25 12 11
47 47 H 1.08997 * 109.49997 * 61.43464 * 25 12 11
48 48 H 1.09003 * 109.62797 * 68.24645 * 26 6 5
49 49 H 1.08994 * 109.63250 * 188.82988 * 26 6 5
50 50 H 1.08996 * 109.49639 * 292.70861 * 27 3 2
51 51 H 1.08998 * 109.48823 * 52.79249 * 27 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0196 1.3850 0.0000
4 6 3.4685 1.4312 0.2381
5 6 3.9082 2.8889 0.4109
6 7 3.4446 3.6580 -0.7539
7 6 4.2947 4.4378 -1.4508
8 8 3.8887 5.0884 -2.3913
9 6 5.7359 4.5061 -1.0614
10 8 6.1200 3.9458 -0.0558
11 7 6.6091 5.1900 -1.8270
12 6 8.0220 5.2566 -1.4457
13 6 8.2273 6.3977 -0.4467
14 6 9.6990 6.4423 -0.0239
15 7 10.5346 6.5374 -1.2286
16 6 11.4640 7.5349 -1.3561
17 1 11.2960 8.4929 -0.8865
18 6 12.6223 7.3149 -2.0889
19 7 12.9204 6.1004 -2.4995
20 14 13.7575 8.7423 -2.4925
21 1 14.7660 8.8932 -1.4128
22 1 14.4473 8.4773 -3.7806
23 1 12.9619 9.9911 -2.6047
24 6 10.3542 5.5416 -2.2938
25 6 8.8751 5.5072 -2.6913
26 6 2.0274 3.5582 -1.1344
27 6 1.6630 2.0695 -1.2499
28 1 -0.3634 0.5138 -0.8900
29 1 -0.3633 -1.0276 -0.0005
30 1 -0.3633 0.5138 0.8899
31 1 1.8933 -0.5138 -0.8901
32 1 1.8933 -0.5139 0.8899
33 1 3.9909 0.9919 -0.6118
34 1 3.7067 0.8698 1.1416
35 1 4.9953 2.9385 0.4733
36 1 3.4674 3.2990 1.3195
37 1 6.3022 5.6377 -2.6311
38 1 8.3189 4.3140 -0.9859
39 1 7.9542 7.3439 -0.9140
40 1 7.6017 6.2305 0.4301
41 1 9.9495 5.5338 0.5237
42 1 9.8729 7.3112 0.6109
43 1 13.7296 5.9467 -3.0118
44 1 10.6581 4.5597 -1.9313
45 1 10.9587 5.8151 -3.1587
46 1 8.7107 4.7062 -3.4120
47 1 8.5960 6.4617 -3.1375
48 1 1.4092 4.0314 -0.3714
49 1 1.8703 4.0505 -2.0941
50 1 2.2106 1.6214 -2.0791
51 1 0.5918 1.9711 -1.4255
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000588122882.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:20:33
Heat of formation + Delta-G solvation = -39.787651 kcal
Electronic energy + Delta-G solvation = -30241.104222 eV
Core-core repulsion = 26176.020871 eV
Total energy + Delta-G solvation = -4065.083351 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-42.13804 -40.39834 -39.26251 -38.90815 -36.60688 -35.74284 -33.94058 -32.31773
-31.85891 -31.81166 -31.23059 -28.24246 -27.16608 -25.79931 -24.61768 -23.91187
-23.47746 -22.76460 -21.84250 -21.26414 -20.51648 -19.05203 -18.44616 -18.22399
-17.30110 -17.08030 -16.75663 -16.45997 -16.20201 -16.11006 -15.79289 -15.65936
-15.45840 -15.32914 -15.09942 -14.83580 -14.76289 -14.30131 -14.13165 -13.92556
-13.67080 -13.23064 -12.99500 -12.95125 -12.92767 -12.74051 -12.64326 -12.51914
-12.35556 -12.21102 -12.14644 -12.03402 -11.99266 -11.85923 -11.71918 -11.61409
-11.35390 -10.56578 -10.32207 -10.15265 -9.98648 -9.34828 -8.65363 -7.86141
-5.36442 0.25746 1.19088 1.48881 1.49686 1.59021 2.03908 2.34194
2.51790 2.87754 3.17790 3.31627 3.67419 3.80457 3.84289 3.91184
3.97455 3.99331 4.20217 4.21357 4.28664 4.38033 4.44693 4.46969
4.49818 4.60920 4.64669 4.65941 4.68152 4.80061 4.82763 4.91721
4.96626 4.99274 5.00718 5.07437 5.12461 5.13775 5.17661 5.30895
5.37124 5.46884 5.51243 5.64969 5.74400 5.86626 5.99398 6.06029
6.18172 6.42452 6.63685 6.88440 7.16670 7.84983 8.37305 9.19931
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.033683 B = 0.002039 C = 0.002008
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 831.071754 B =13727.634333 C =13938.679406
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C 0.048 3.952
3 N -0.545 5.545
4 C 0.047 3.953
5 C 0.059 3.941
6 N -0.578 5.578
7 C 0.508 3.492
8 O -0.546 6.546
9 C 0.509 3.491
10 O -0.525 6.525
11 N -0.680 5.680
12 C 0.160 3.840
13 C -0.127 4.127
14 C 0.146 3.854
15 N -0.610 5.610
16 C -0.261 4.261
17 H 0.066 0.934
18 C -0.050 4.050
19 N -0.936 5.936
20 Si 0.970 3.030
21 H -0.286 1.286
22 H -0.293 1.293
23 H -0.270 1.270
24 C 0.179 3.821
25 C -0.133 4.133
26 C 0.110 3.890
27 C 0.045 3.955
28 H 0.056 0.944
29 H 0.069 0.931
30 H 0.060 0.940
31 H 0.030 0.970
32 H 0.082 0.918
33 H 0.027 0.973
34 H 0.103 0.897
35 H 0.147 0.853
36 H 0.081 0.919
37 H 0.416 0.584
38 H 0.077 0.923
39 H 0.062 0.938
40 H 0.068 0.932
41 H 0.016 0.984
42 H 0.059 0.941
43 H 0.251 0.749
44 H 0.000 1.000
45 H 0.067 0.933
46 H 0.076 0.924
47 H 0.066 0.934
48 H 0.091 0.909
49 H 0.093 0.907
50 H 0.029 0.971
51 H 0.111 0.889
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -25.682 -10.947 3.583 28.147
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.079 4.079
3 N -0.270 5.270
4 C -0.082 4.082
5 C -0.062 4.062
6 N -0.311 5.311
7 C 0.291 3.709
8 O -0.424 6.424
9 C 0.290 3.710
10 O -0.404 6.404
11 N -0.330 5.330
12 C 0.057 3.943
13 C -0.167 4.167
14 C 0.020 3.980
15 N -0.334 5.334
16 C -0.391 4.391
17 H 0.084 0.916
18 C -0.245 4.245
19 N -0.582 5.582
20 Si 0.798 3.202
21 H -0.213 1.213
22 H -0.219 1.219
23 H -0.195 1.195
24 C 0.052 3.948
25 C -0.173 4.173
26 C -0.012 4.012
27 C -0.084 4.084
28 H 0.075 0.925
29 H 0.088 0.912
30 H 0.079 0.921
31 H 0.048 0.952
32 H 0.100 0.900
33 H 0.045 0.955
34 H 0.121 0.879
35 H 0.163 0.837
36 H 0.099 0.901
37 H 0.254 0.746
38 H 0.095 0.905
39 H 0.081 0.919
40 H 0.087 0.913
41 H 0.034 0.966
42 H 0.077 0.923
43 H 0.060 0.940
44 H 0.018 0.982
45 H 0.086 0.914
46 H 0.095 0.905
47 H 0.084 0.916
48 H 0.109 0.891
49 H 0.111 0.889
50 H 0.047 0.953
51 H 0.129 0.871
Dipole moment (debyes) X Y Z Total
from point charges -25.717 -10.795 4.089 28.189
hybrid contribution 1.245 0.302 -1.248 1.789
sum -24.472 -10.494 2.841 26.778
Atomic orbital electron populations
1.21778 0.93691 1.02364 1.02406 1.22156 0.97016 0.87622 1.01119
1.62082 1.13501 1.16876 1.34551 1.22480 0.87507 0.96446 1.01767
1.23358 1.06214 0.89965 0.86686 1.48175 1.09803 1.43383 1.29749
1.20033 0.86966 0.80872 0.83038 1.90739 1.78364 1.44062 1.29222
1.20245 0.87147 0.79613 0.83954 1.90344 1.78757 1.45330 1.26010
1.46039 1.08503 1.50860 1.27626 1.20924 0.78006 0.99285 0.96112
1.22217 0.97605 0.98132 0.98702 1.20971 0.89409 0.98812 0.88844
1.44315 1.41527 1.32009 1.15554 1.19504 0.96934 0.92206 1.30497
0.91582 1.25884 0.98186 0.98401 1.02003 1.70107 1.25974 1.20549
1.41578 0.85245 0.78795 0.79328 0.76869 1.21281 1.21889 1.19520
1.20602 0.91447 0.90223 0.92499 1.22323 0.96775 1.01988 0.96172
1.22091 0.79340 0.97067 1.02671 1.22593 1.02675 0.92839 0.90285
0.92471 0.91168 0.92053 0.95168 0.89963 0.95463 0.87879 0.83684
0.90097 0.74643 0.90486 0.91906 0.91293 0.96610 0.92259 0.94024
0.98198 0.91429 0.90508 0.91556 0.89081 0.88879 0.95300 0.87112
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.24 9.84 71.98 0.71 -0.54 16
2 C 0.05 0.54 5.68 86.30 0.49 1.03 16
3 N -0.54 -7.85 4.63 -894.27 -4.14 -11.99 16
4 C 0.05 0.75 5.62 86.38 0.49 1.24 16
5 C 0.06 1.14 6.36 86.35 0.55 1.69 16
6 N -0.58 -12.44 3.00 -818.63 -2.46 -14.90 16
7 C 0.51 13.25 7.77 87.27 0.68 13.93 16
8 O -0.55 -16.02 15.95 -3.26 -0.05 -16.07 16
9 C 0.51 14.13 7.77 87.27 0.68 14.81 16
10 O -0.53 -15.78 12.69 -3.26 -0.04 -15.82 16
11 N -0.68 -18.80 5.07 -443.74 -2.25 -21.05 16
12 C 0.16 5.20 2.41 45.02 0.11 5.31 16
13 C -0.13 -4.31 5.65 30.67 0.17 -4.14 16
14 C 0.15 6.02 6.52 86.36 0.56 6.59 16
15 N -0.61 -30.11 2.99 -699.10 -2.09 -32.21 16
16 C -0.26 -14.13 9.60 84.03 0.81 -13.33 16
17 H 0.07 3.49 7.85 -2.91 -0.02 3.46 16
18 C -0.05 -2.72 5.08 84.86 0.43 -2.29 16
19 N -0.94 -54.31 10.92 21.65 0.24 -54.07 16
20 Si 0.97 44.32 29.56 68.60 2.03 46.35 16
21 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16
22 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16
23 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16
24 C 0.18 8.35 5.26 86.36 0.45 8.81 16
25 C -0.13 -4.69 5.55 30.67 0.17 -4.52 16
26 C 0.11 1.86 6.62 86.50 0.57 2.43 16
27 C 0.04 0.63 5.48 86.54 0.47 1.10 16
28 H 0.06 0.47 6.40 -2.39 -0.02 0.45 16
29 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16
30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16
31 H 0.03 0.36 8.13 -2.38 -0.02 0.34 16
32 H 0.08 0.83 7.97 -2.39 -0.02 0.82 16
33 H 0.03 0.50 8.14 -2.38 -0.02 0.48 16
34 H 0.10 1.37 7.99 -2.39 -0.02 1.35 16
35 H 0.15 3.41 3.91 -75.83 -0.30 3.11 16
36 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16
37 H 0.42 10.53 8.09 -92.70 -0.75 9.78 16
38 H 0.08 2.71 7.58 -2.39 -0.02 2.69 16
39 H 0.06 2.14 8.14 -2.39 -0.02 2.13 16
40 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16
41 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16
42 H 0.06 2.39 7.93 -2.38 -0.02 2.37 16
43 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16
44 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16
45 H 0.07 3.59 6.00 -2.38 -0.01 3.57 16
46 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16
47 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16
48 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16
49 H 0.09 1.68 7.07 -2.39 -0.02 1.66 16
50 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16
51 H 0.11 1.12 6.16 -2.39 -0.01 1.11 16
Total: -1.00 -63.76 392.43 -1.53 -65.29
By element:
Atomic # 1 Polarization: 22.46 SS G_CDS: -0.11 Total: 22.35 kcal
Atomic # 6 Polarization: 24.78 SS G_CDS: 7.34 Total: 32.12 kcal
Atomic # 7 Polarization: -123.51 SS G_CDS: -10.70 Total: -134.22 kcal
Atomic # 8 Polarization: -31.80 SS G_CDS: -0.09 Total: -31.89 kcal
Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal
Total: -63.76 -1.53 -65.29 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000588122882.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 25.503 kcal
(2) G-P(sol) polarization free energy of solvation -63.758 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.254 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.533 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.291 kcal
(6) G-S(sol) free energy of system = (1) + (5) -39.788 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds