Wall clock time and date at job start Tue Mar 31 2020 21:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.46934 * 2 1 4 4 C 1.36738 * 127.13215 * 87.81255 * 3 2 1 5 5 C 1.50696 * 126.35288 * 359.97437 * 4 3 2 6 6 H 1.09004 * 110.43566 * 1.09896 * 5 4 3 7 7 C 1.54804 * 110.49270 * 238.55031 * 5 4 3 8 8 C 1.54999 * 102.09598 * 220.44416 * 7 5 4 9 9 O 1.44382 * 103.63137 * 36.94214 * 8 7 5 10 10 C 1.43892 * 106.89929 * 320.16232 * 9 8 7 11 11 H 1.08996 * 109.73032 * 266.88550 * 10 9 8 12 12 C 1.52994 * 110.07240 * 145.85398 * 10 9 8 13 13 N 1.30299 * 107.30273 * 180.23879 * 4 3 2 14 14 N 1.28529 * 110.05082 * 359.55783 * 13 4 3 15 15 C 1.31219 * 109.86228 * 0.45338 * 14 13 4 16 16 N 1.38586 * 126.47481 * 179.69288 * 15 14 13 17 17 C 1.46895 * 110.99867 * 294.37068 * 16 15 14 18 18 C 1.50698 * 109.46947 * 195.52811 * 17 16 15 19 19 H 1.07999 * 120.00238 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00079 * 180.02562 * 18 17 16 21 21 N 1.31521 * 120.00341 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00135 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47058 * 90.00102 * 22 20 18 24 24 H 1.48498 * 109.47140 * 209.99765 * 22 20 18 25 25 H 1.48494 * 109.46922 * 329.99945 * 22 20 18 26 26 C 1.46900 * 110.99512 * 58.32472 * 16 15 14 27 27 C 1.53000 * 109.47358 * 70.00300 * 26 16 15 28 28 O 1.42902 * 109.47299 * 64.99306 * 27 26 16 29 29 C 1.42900 * 113.99982 * 180.02562 * 28 27 26 30 30 H 1.09003 * 109.47026 * 175.35281 * 1 2 3 31 31 H 1.08996 * 109.47331 * 295.34812 * 1 2 3 32 32 H 1.09002 * 109.47384 * 55.35500 * 1 2 3 33 33 H 1.09002 * 109.47085 * 239.99761 * 2 1 3 34 34 H 1.08999 * 109.47034 * 120.00336 * 2 1 3 35 35 H 1.09000 * 110.91232 * 102.24075 * 7 5 4 36 36 H 1.09010 * 110.93546 * 338.65143 * 7 5 4 37 37 H 1.08991 * 110.61857 * 155.52239 * 8 7 5 38 38 H 1.08997 * 110.61398 * 278.36190 * 8 7 5 39 39 H 1.08999 * 109.47150 * 301.94755 * 12 10 9 40 40 H 1.09001 * 109.47702 * 61.95490 * 12 10 9 41 41 H 1.09003 * 109.47133 * 181.95215 * 12 10 9 42 42 H 1.08996 * 109.47355 * 315.52610 * 17 16 15 43 43 H 1.09003 * 109.47145 * 75.52679 * 17 16 15 44 44 H 0.96992 * 120.00638 * 179.97438 * 21 20 18 45 45 H 1.09005 * 109.46641 * 189.99831 * 26 16 15 46 46 H 1.08998 * 109.47296 * 309.99389 * 26 16 15 47 47 H 1.08995 * 109.46999 * 184.99495 * 27 26 16 48 48 H 1.09005 * 109.46658 * 304.99545 * 27 26 16 49 49 H 1.09005 * 109.47099 * 60.00651 * 29 28 27 50 50 H 1.09002 * 109.46690 * 179.97438 * 29 28 27 51 51 H 1.08988 * 109.47147 * 300.00212 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2542 2.1733 1.0893 5 6 2.0589 1.7880 2.5331 6 1 1.7119 0.7574 2.6083 7 6 1.0575 2.7484 3.2196 8 6 1.7096 2.9577 4.6101 9 8 3.1241 2.9860 4.3219 10 6 3.3678 1.9784 3.3239 11 1 3.6485 1.0425 3.8069 12 6 4.4839 2.4323 2.3811 13 7 2.6737 3.3251 0.6475 14 7 2.7274 3.3114 -0.6366 15 6 2.3325 2.1439 -1.0869 16 7 2.2496 1.7584 -2.4155 17 6 1.2279 2.5381 -3.1270 18 6 0.8941 1.8581 -4.4298 19 1 1.3915 0.9390 -4.7022 20 6 -0.0455 2.4099 -5.2745 21 7 -0.6509 3.5295 -4.9431 22 14 -0.4588 1.5675 -6.8897 23 1 -1.5745 0.6107 -6.6777 24 1 -0.8646 2.5871 -7.8902 25 1 0.7340 0.8349 -7.3853 26 6 3.5553 1.8720 -3.0790 27 6 4.4985 0.7965 -2.5361 28 8 4.0038 -0.4956 -2.8936 29 6 4.8157 -1.5770 -2.4318 30 1 -0.3633 -1.0243 -0.0833 31 1 -0.3634 0.4399 0.9287 32 1 -0.3634 0.5842 -0.8455 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 0.0764 2.2836 3.3161 36 1 0.9876 3.6912 2.6770 37 1 1.3879 3.9032 5.0465 38 1 1.4698 2.1281 5.2752 39 1 4.2043 3.3773 1.9154 40 1 5.4061 2.5649 2.9469 41 1 4.6367 1.6780 1.6092 42 1 0.3302 2.6069 -2.5127 43 1 1.6090 3.5395 -3.3270 44 1 -1.3117 3.9180 -5.5375 45 1 3.4299 1.7365 -4.1533 46 1 3.9775 2.8577 -2.8839 47 1 5.4920 0.9359 -2.9623 48 1 4.5542 0.8766 -1.4505 49 1 4.8775 -1.5461 -1.3439 50 1 4.3724 -2.5229 -2.7433 51 1 5.8158 -1.4871 -2.8553 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592407703.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:26 Heat of formation + Delta-G solvation = 6.493045 kcal Electronic energy + Delta-G solvation = -32008.607821 eV Core-core repulsion = 27945.531352 eV Total energy + Delta-G solvation = -4063.076469 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.69012 -39.58115 -37.94678 -36.33428 -35.39643 -33.32667 -32.59164 -31.52908 -30.29961 -29.77060 -28.66473 -26.60200 -26.17915 -25.75103 -23.88518 -22.69525 -22.43137 -22.19267 -22.06162 -19.79017 -19.42207 -17.11003 -16.80204 -16.36355 -16.18436 -15.88278 -15.83655 -15.51724 -15.38426 -15.20481 -14.59836 -14.50338 -14.14431 -13.75372 -13.69718 -13.25799 -12.90417 -12.77140 -12.42747 -12.39078 -12.26988 -12.15487 -12.03632 -11.98015 -11.51867 -11.36830 -11.31680 -11.21728 -11.19697 -10.96040 -10.86131 -10.77174 -10.65552 -10.44332 -10.12892 -10.03994 -9.86560 -9.63045 -9.47344 -9.37840 -8.50819 -8.39674 -7.76389 -6.07291 -4.10379 2.11784 2.65137 3.24107 3.30122 3.36546 3.40783 3.71022 4.03999 4.21703 4.33765 4.43684 4.55701 4.59988 4.76008 4.85099 4.93824 5.03350 5.11419 5.24127 5.27989 5.29712 5.34039 5.35694 5.42416 5.45267 5.51183 5.54640 5.59588 5.62496 5.68462 5.71134 5.73565 5.78501 5.84559 5.97109 5.98089 6.16698 6.21388 6.27368 6.44946 6.48255 6.56694 6.80106 6.92888 7.17993 7.30027 7.41826 7.73224 7.86041 8.03929 8.41556 8.97528 9.20872 9.53911 11.03135 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012901 B = 0.003807 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.866219 B = 7354.026617 C = 8307.593939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.109 3.891 3 N -0.463 5.463 4 C 0.164 3.836 5 C -0.027 4.027 6 H 0.095 0.905 7 C -0.143 4.143 8 C 0.049 3.951 9 O -0.367 6.367 10 C 0.091 3.909 11 H 0.070 0.930 12 C -0.160 4.160 13 N -0.277 5.277 14 N -0.324 5.324 15 C 0.378 3.622 16 N -0.458 5.458 17 C 0.212 3.788 18 C -0.511 4.511 19 H 0.070 0.930 20 C 0.059 3.941 21 N -0.895 5.895 22 Si 0.900 3.100 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.272 1.272 26 C 0.072 3.928 27 C 0.069 3.931 28 O -0.367 6.367 29 C 0.030 3.970 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.109 0.891 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.060 0.940 39 H 0.100 0.900 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.027 0.973 43 H 0.011 0.989 44 H 0.263 0.737 45 H 0.107 0.893 46 H 0.060 0.940 47 H 0.049 0.951 48 H 0.034 0.966 49 H 0.031 0.969 50 H 0.082 0.918 51 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.766 -9.531 15.754 19.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.014 4.014 3 N -0.156 5.156 4 C -0.102 4.102 5 C -0.048 4.048 6 H 0.113 0.887 7 C -0.182 4.182 8 C -0.028 4.028 9 O -0.286 6.286 10 C 0.033 3.967 11 H 0.088 0.912 12 C -0.218 4.218 13 N -0.118 5.118 14 N -0.168 5.168 15 C 0.023 3.977 16 N -0.185 5.185 17 C 0.088 3.912 18 C -0.549 4.549 19 H 0.088 0.912 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.728 3.272 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.197 1.197 26 C -0.055 4.055 27 C -0.009 4.009 28 O -0.285 6.285 29 C -0.067 4.067 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.128 0.872 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.078 0.922 39 H 0.119 0.881 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.045 0.955 43 H 0.029 0.971 44 H 0.072 0.928 45 H 0.125 0.875 46 H 0.078 0.922 47 H 0.067 0.933 48 H 0.052 0.948 49 H 0.050 0.950 50 H 0.101 0.899 51 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 6.962 -8.376 15.609 19.033 hybrid contribution -0.625 -1.255 -0.834 1.631 sum 6.337 -9.631 14.775 18.741 Atomic orbital electron populations 1.22113 0.93871 1.03272 1.03167 1.21789 0.95939 0.79202 1.04424 1.46431 1.49470 1.13606 1.06120 1.23935 1.06135 0.89861 0.90296 1.20905 0.97169 1.00425 0.86288 0.88719 1.23223 0.98090 1.00788 0.96102 1.23505 0.81281 1.02200 0.95766 1.88950 1.23930 1.57576 1.58173 1.22613 0.94232 0.91509 0.88369 0.91227 1.22258 0.96971 1.04471 0.98063 1.73872 1.17108 1.17213 1.03610 1.74709 1.22177 1.17106 1.02789 1.22867 0.98496 0.86596 0.89773 1.59105 1.08544 1.56747 0.94131 1.19792 0.87259 0.91305 0.92825 1.21104 1.22520 1.09275 1.02037 0.91169 1.24970 0.95949 0.94929 0.98477 1.69975 1.26884 1.19008 1.37508 0.86459 0.78764 0.79022 0.82948 1.20697 1.21312 1.19654 1.22131 0.86946 0.95407 1.01043 1.22617 0.96461 0.84016 0.97782 1.88093 1.49466 1.13505 1.77432 1.22685 0.95056 0.91145 0.97793 0.90645 0.92775 0.90545 0.87231 0.90176 0.89888 0.88969 0.88694 0.92213 0.88119 0.92630 0.92647 0.95486 0.97129 0.92773 0.87466 0.92236 0.93261 0.94783 0.95035 0.89930 0.94674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 10.24 37.16 0.38 -1.73 16 2 C 0.11 1.43 6.58 -4.04 -0.03 1.40 16 3 N -0.46 -7.62 2.81 -114.09 -0.32 -7.94 16 4 C 0.16 2.59 5.12 -154.02 -0.79 1.80 16 5 C -0.03 -0.31 3.45 -90.24 -0.31 -0.62 16 6 H 0.09 0.87 7.07 -51.93 -0.37 0.51 16 7 C -0.14 -1.55 6.70 -24.72 -0.17 -1.71 16 8 C 0.05 0.47 7.71 38.21 0.29 0.76 16 9 O -0.37 -4.66 11.21 -35.23 -0.39 -5.05 16 10 C 0.09 1.07 4.04 -26.16 -0.11 0.96 16 11 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 12 C -0.16 -2.14 8.30 37.15 0.31 -1.83 16 13 N -0.28 -5.29 9.37 32.99 0.31 -4.98 16 14 N -0.32 -6.96 11.93 30.31 0.36 -6.60 16 15 C 0.38 7.60 5.36 -318.87 -1.71 5.88 16 16 N -0.46 -9.77 4.41 -175.88 -0.78 -10.55 16 17 C 0.21 5.47 4.68 -4.98 -0.02 5.45 16 18 C -0.51 -13.83 8.39 -34.44 -0.29 -14.12 16 19 H 0.07 1.89 7.60 -52.49 -0.40 1.49 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 22 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 26 C 0.07 1.40 5.17 -3.82 -0.02 1.38 16 27 C 0.07 1.09 6.06 37.16 0.23 1.32 16 28 O -0.37 -5.98 10.65 -35.23 -0.38 -6.36 16 29 C 0.03 0.35 11.01 101.05 1.11 1.47 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.11 1.57 8.14 -51.93 -0.42 1.15 16 34 H 0.08 0.77 7.34 -51.93 -0.38 0.39 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.09 1.23 7.75 -51.92 -0.40 0.83 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.10 1.64 5.68 -51.93 -0.29 1.34 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.05 0.75 7.61 -51.93 -0.40 0.36 16 42 H 0.03 0.77 7.98 -51.93 -0.41 0.35 16 43 H 0.01 0.31 8.06 -51.93 -0.42 -0.11 16 44 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 45 H 0.11 2.20 7.04 -51.93 -0.37 1.83 16 46 H 0.06 1.16 7.82 -51.93 -0.41 0.76 16 47 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.03 0.55 7.39 -51.93 -0.38 0.17 16 49 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 51 H 0.03 0.36 8.14 -51.94 -0.42 -0.06 16 LS Contribution 408.28 15.07 6.15 6.15 Total: -1.00 -32.52 408.28 -9.40 -41.92 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -8.86 Total: 0.80 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -1.22 Total: 1.94 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: 0.31 Total: -55.59 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: -0.77 Total: -11.41 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.52 -9.40 -41.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592407703.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.415 kcal (2) G-P(sol) polarization free energy of solvation -32.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds