Wall clock time and date at job start Tue Mar 31 2020 21:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.46934 * 2 1 4 4 C 1.36738 * 127.13215 * 87.81255 * 3 2 1 5 5 C 1.50696 * 126.35288 * 359.97437 * 4 3 2 6 6 H 1.09004 * 110.43566 * 1.09896 * 5 4 3 7 7 C 1.54804 * 110.49270 * 238.55031 * 5 4 3 8 8 C 1.54999 * 102.09598 * 220.44416 * 7 5 4 9 9 O 1.44382 * 103.63137 * 36.94214 * 8 7 5 10 10 C 1.43892 * 106.89929 * 320.16232 * 9 8 7 11 11 H 1.08996 * 109.73032 * 266.88550 * 10 9 8 12 12 C 1.52994 * 110.07240 * 145.85398 * 10 9 8 13 13 N 1.30299 * 107.30273 * 180.23879 * 4 3 2 14 14 N 1.28529 * 110.05082 * 359.55783 * 13 4 3 15 15 C 1.31219 * 109.86228 * 0.45338 * 14 13 4 16 16 N 1.38586 * 126.47481 * 179.69288 * 15 14 13 17 17 C 1.46895 * 110.99867 * 294.37068 * 16 15 14 18 18 C 1.50698 * 109.46947 * 195.52811 * 17 16 15 19 19 H 1.07999 * 120.00238 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00079 * 180.02562 * 18 17 16 21 21 N 1.31521 * 120.00341 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00135 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47058 * 90.00102 * 22 20 18 24 24 H 1.48498 * 109.47140 * 209.99765 * 22 20 18 25 25 H 1.48494 * 109.46922 * 329.99945 * 22 20 18 26 26 C 1.46900 * 110.99512 * 58.32472 * 16 15 14 27 27 C 1.53000 * 109.47358 * 70.00300 * 26 16 15 28 28 O 1.42902 * 109.47299 * 64.99306 * 27 26 16 29 29 C 1.42900 * 113.99982 * 180.02562 * 28 27 26 30 30 H 1.09003 * 109.47026 * 175.35281 * 1 2 3 31 31 H 1.08996 * 109.47331 * 295.34812 * 1 2 3 32 32 H 1.09002 * 109.47384 * 55.35500 * 1 2 3 33 33 H 1.09002 * 109.47085 * 239.99761 * 2 1 3 34 34 H 1.08999 * 109.47034 * 120.00336 * 2 1 3 35 35 H 1.09000 * 110.91232 * 102.24075 * 7 5 4 36 36 H 1.09010 * 110.93546 * 338.65143 * 7 5 4 37 37 H 1.08991 * 110.61857 * 155.52239 * 8 7 5 38 38 H 1.08997 * 110.61398 * 278.36190 * 8 7 5 39 39 H 1.08999 * 109.47150 * 301.94755 * 12 10 9 40 40 H 1.09001 * 109.47702 * 61.95490 * 12 10 9 41 41 H 1.09003 * 109.47133 * 181.95215 * 12 10 9 42 42 H 1.08996 * 109.47355 * 315.52610 * 17 16 15 43 43 H 1.09003 * 109.47145 * 75.52679 * 17 16 15 44 44 H 0.96992 * 120.00638 * 179.97438 * 21 20 18 45 45 H 1.09005 * 109.46641 * 189.99831 * 26 16 15 46 46 H 1.08998 * 109.47296 * 309.99389 * 26 16 15 47 47 H 1.08995 * 109.46999 * 184.99495 * 27 26 16 48 48 H 1.09005 * 109.46658 * 304.99545 * 27 26 16 49 49 H 1.09005 * 109.47099 * 60.00651 * 29 28 27 50 50 H 1.09002 * 109.46690 * 179.97438 * 29 28 27 51 51 H 1.08988 * 109.47147 * 300.00212 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2542 2.1733 1.0893 5 6 2.0589 1.7880 2.5331 6 1 1.7119 0.7574 2.6083 7 6 1.0575 2.7484 3.2196 8 6 1.7096 2.9577 4.6101 9 8 3.1241 2.9860 4.3219 10 6 3.3678 1.9784 3.3239 11 1 3.6485 1.0425 3.8069 12 6 4.4839 2.4323 2.3811 13 7 2.6737 3.3251 0.6475 14 7 2.7274 3.3114 -0.6366 15 6 2.3325 2.1439 -1.0869 16 7 2.2496 1.7584 -2.4155 17 6 1.2279 2.5381 -3.1270 18 6 0.8941 1.8581 -4.4298 19 1 1.3915 0.9390 -4.7022 20 6 -0.0455 2.4099 -5.2745 21 7 -0.6509 3.5295 -4.9431 22 14 -0.4588 1.5675 -6.8897 23 1 -1.5745 0.6107 -6.6777 24 1 -0.8646 2.5871 -7.8902 25 1 0.7340 0.8349 -7.3853 26 6 3.5553 1.8720 -3.0790 27 6 4.4985 0.7965 -2.5361 28 8 4.0038 -0.4956 -2.8936 29 6 4.8157 -1.5770 -2.4318 30 1 -0.3633 -1.0243 -0.0833 31 1 -0.3634 0.4399 0.9287 32 1 -0.3634 0.5842 -0.8455 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 0.0764 2.2836 3.3161 36 1 0.9876 3.6912 2.6770 37 1 1.3879 3.9032 5.0465 38 1 1.4698 2.1281 5.2752 39 1 4.2043 3.3773 1.9154 40 1 5.4061 2.5649 2.9469 41 1 4.6367 1.6780 1.6092 42 1 0.3302 2.6069 -2.5127 43 1 1.6090 3.5395 -3.3270 44 1 -1.3117 3.9180 -5.5375 45 1 3.4299 1.7365 -4.1533 46 1 3.9775 2.8577 -2.8839 47 1 5.4920 0.9359 -2.9623 48 1 4.5542 0.8766 -1.4505 49 1 4.8775 -1.5461 -1.3439 50 1 4.3724 -2.5229 -2.7433 51 1 5.8158 -1.4871 -2.8553 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592407703.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:25 Heat of formation + Delta-G solvation = -14.866079 kcal Electronic energy + Delta-G solvation = -32009.534022 eV Core-core repulsion = 27945.531352 eV Total energy + Delta-G solvation = -4064.002671 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.08673 -40.50702 -39.31094 -37.83526 -36.64772 -34.85579 -34.20852 -32.41984 -31.49632 -31.22389 -30.25981 -28.21493 -27.16793 -26.99441 -25.08665 -24.37424 -24.00588 -23.27249 -23.06465 -21.23655 -20.59331 -18.79562 -17.98955 -17.74729 -17.64383 -17.20248 -16.81447 -16.70532 -16.57382 -16.42681 -16.32509 -15.65727 -15.35611 -15.25195 -14.80243 -14.51726 -14.25095 -14.02121 -13.87066 -13.63310 -13.55737 -13.40858 -13.15942 -13.11175 -12.91768 -12.75803 -12.66711 -12.48358 -12.43924 -12.33580 -12.16023 -12.07538 -11.91113 -11.86407 -11.78830 -11.59578 -11.36251 -11.00766 -10.66365 -10.62369 -10.58544 -9.88245 -9.53908 -8.22932 -6.34917 0.74152 1.33804 1.42848 1.43977 1.56274 1.79164 2.39543 2.83078 2.87581 2.97210 3.10862 3.17794 3.54081 3.62158 3.81300 3.87632 3.97310 4.06290 4.10390 4.12275 4.26797 4.28310 4.32687 4.37810 4.42870 4.51740 4.53734 4.57118 4.62310 4.63757 4.66701 4.73443 4.81093 4.85943 4.87365 4.89717 4.93407 4.98059 5.02778 5.09827 5.14621 5.17611 5.23176 5.41365 5.61606 5.80196 5.91936 5.97317 6.01166 6.30347 6.59471 6.79540 7.34896 7.76802 8.88656 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012901 B = 0.003807 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.866219 B = 7354.026617 C = 8307.593939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.103 3.897 3 N -0.458 5.458 4 C 0.190 3.810 5 C -0.029 4.029 6 H 0.136 0.864 7 C -0.143 4.143 8 C 0.051 3.949 9 O -0.393 6.393 10 C 0.094 3.906 11 H 0.106 0.894 12 C -0.158 4.158 13 N -0.310 5.310 14 N -0.363 5.363 15 C 0.356 3.644 16 N -0.450 5.450 17 C 0.237 3.763 18 C -0.518 4.518 19 H 0.073 0.927 20 C 0.006 3.994 21 N -0.936 5.936 22 Si 0.974 3.026 23 H -0.271 1.271 24 H -0.284 1.284 25 H -0.260 1.260 26 C 0.071 3.929 27 C 0.086 3.914 28 O -0.395 6.395 29 C 0.025 3.975 30 H 0.105 0.895 31 H 0.070 0.930 32 H 0.024 0.976 33 H 0.095 0.905 34 H 0.130 0.870 35 H 0.110 0.890 36 H 0.055 0.945 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.050 0.950 42 H -0.010 1.010 43 H -0.030 1.030 44 H 0.265 0.735 45 H 0.090 0.910 46 H 0.047 0.953 47 H 0.074 0.926 48 H 0.032 0.968 49 H 0.044 0.956 50 H 0.097 0.903 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.973 -13.203 17.697 23.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.018 4.018 3 N -0.150 5.150 4 C -0.078 4.078 5 C -0.050 4.050 6 H 0.153 0.847 7 C -0.182 4.182 8 C -0.025 4.025 9 O -0.312 6.312 10 C 0.036 3.964 11 H 0.124 0.876 12 C -0.216 4.216 13 N -0.151 5.151 14 N -0.207 5.207 15 C -0.001 4.001 16 N -0.175 5.175 17 C 0.111 3.889 18 C -0.556 4.556 19 H 0.091 0.909 20 C -0.193 4.193 21 N -0.576 5.576 22 Si 0.798 3.202 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.184 1.184 26 C -0.057 4.057 27 C 0.009 3.991 28 O -0.314 6.314 29 C -0.071 4.071 30 H 0.123 0.877 31 H 0.089 0.911 32 H 0.043 0.957 33 H 0.114 0.886 34 H 0.148 0.852 35 H 0.128 0.872 36 H 0.074 0.926 37 H 0.119 0.881 38 H 0.112 0.888 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.008 0.992 43 H -0.013 1.013 44 H 0.074 0.926 45 H 0.108 0.892 46 H 0.065 0.935 47 H 0.092 0.908 48 H 0.050 0.950 49 H 0.063 0.937 50 H 0.116 0.884 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.190 -12.075 17.577 22.505 hybrid contribution -0.665 -0.093 -1.306 1.469 sum 6.525 -12.168 16.271 21.340 Atomic orbital electron populations 1.22075 0.93578 1.04325 1.01759 1.22141 0.96116 0.77357 1.06202 1.46620 1.48718 1.14706 1.05004 1.24806 1.02691 0.88436 0.91847 1.21304 0.97932 1.02734 0.83014 0.84652 1.23227 0.99444 0.99103 0.96433 1.23700 0.79472 1.04046 0.95278 1.88928 1.25779 1.58296 1.58246 1.22703 0.93113 0.92544 0.88029 0.87632 1.22177 0.98435 1.02564 0.98413 1.73848 1.19241 1.19402 1.02562 1.74592 1.23270 1.18439 1.04367 1.22701 1.00268 0.87340 0.89782 1.58990 1.08446 1.55250 0.94863 1.19248 0.87054 0.89953 0.92610 1.21319 1.22544 1.09238 1.02483 0.90923 1.25932 0.95584 0.95416 1.02351 1.70126 1.27601 1.20732 1.39098 0.85310 0.78939 0.77968 0.77978 1.19684 1.20994 1.18421 1.22132 0.86835 0.96598 1.00113 1.22351 0.96088 0.83294 0.97410 1.88039 1.51132 1.14164 1.78046 1.22913 0.95349 0.90058 0.98744 0.87651 0.91060 0.95652 0.88616 0.85181 0.87209 0.92606 0.88135 0.88787 0.91582 0.91764 0.93134 0.99180 1.01268 0.92611 0.89208 0.93526 0.90760 0.94960 0.93724 0.88444 0.93225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.78 10.24 71.98 0.74 -3.04 16 2 C 0.10 2.46 6.58 86.38 0.57 3.03 16 3 N -0.46 -14.96 2.81 -514.86 -1.45 -16.41 16 4 C 0.19 5.88 5.12 137.64 0.70 6.59 16 5 C -0.03 -0.58 3.45 -10.55 -0.04 -0.62 16 6 H 0.14 1.68 7.07 -2.39 -0.02 1.67 16 7 C -0.14 -2.75 6.70 31.89 0.21 -2.54 16 8 C 0.05 0.81 7.71 72.67 0.56 1.37 16 9 O -0.39 -9.02 11.21 -148.98 -1.67 -10.69 16 10 C 0.09 1.92 4.04 30.97 0.13 2.04 16 11 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 12 C -0.16 -4.09 8.30 71.98 0.60 -3.49 16 13 N -0.31 -12.40 9.37 -49.54 -0.46 -12.87 16 14 N -0.36 -16.66 11.93 -58.00 -0.69 -17.35 16 15 C 0.36 15.04 5.36 260.11 1.40 16.44 16 16 N -0.45 -20.32 4.41 -710.37 -3.13 -23.46 16 17 C 0.24 13.20 4.68 85.56 0.40 13.60 16 18 C -0.52 -29.28 8.39 25.60 0.21 -29.06 16 19 H 0.07 4.01 7.60 -2.91 -0.02 3.98 16 20 C 0.01 0.32 5.46 84.65 0.46 0.78 16 21 N -0.94 -57.29 13.29 21.45 0.28 -57.00 16 22 Si 0.97 44.10 29.54 68.60 2.03 46.13 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 24 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 25 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 26 C 0.07 2.88 5.17 86.30 0.45 3.33 16 27 C 0.09 2.73 6.06 71.98 0.44 3.17 16 28 O -0.39 -12.47 10.65 -148.98 -1.59 -14.06 16 29 C 0.03 0.53 11.01 113.37 1.25 1.78 16 30 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.13 1.83 7.34 -2.39 -0.02 1.82 16 35 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.06 1.49 7.75 -2.38 -0.02 1.48 16 37 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.07 2.21 5.68 -2.39 -0.01 2.20 16 40 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.05 1.32 7.61 -2.39 -0.02 1.30 16 42 H -0.01 -0.62 7.98 -2.39 -0.02 -0.63 16 43 H -0.03 -1.91 8.06 -2.39 -0.02 -1.93 16 44 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 45 H 0.09 3.91 7.04 -2.38 -0.02 3.89 16 46 H 0.05 1.98 7.82 -2.39 -0.02 1.96 16 47 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 48 H 0.03 1.04 7.39 -2.38 -0.02 1.02 16 49 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 50 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 51 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -78.29 408.28 2.29 -76.00 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 0.90 Total: 16.35 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: 8.07 Total: 13.36 kcal Atomic # 7 Polarization: -121.64 SS G_CDS: -5.45 Total: -127.09 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -3.26 Total: -24.75 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -78.29 2.29 -76.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592407703.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.129 kcal (2) G-P(sol) polarization free energy of solvation -78.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds