Wall clock time and date at job start Tue Mar 31 2020 21:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47250 * 2 1 4 4 C 1.36734 * 127.13847 * 275.67468 * 3 2 1 5 5 C 1.50700 * 126.34583 * 0.02562 * 4 3 2 6 6 H 1.08996 * 110.43831 * 2.54668 * 5 4 3 7 7 C 1.54816 * 110.48871 * 125.23405 * 5 4 3 8 8 C 1.54996 * 102.09277 * 139.55532 * 7 5 4 9 9 O 1.44381 * 103.49207 * 322.97560 * 8 7 5 10 10 C 1.43745 * 106.97146 * 40.06347 * 9 8 7 11 11 H 1.09001 * 109.99829 * 213.99252 * 10 9 8 12 12 C 1.52996 * 109.87886 * 92.90972 * 10 9 8 13 13 N 1.30288 * 107.30770 * 179.97438 * 4 3 2 14 14 N 1.28533 * 110.05192 * 359.72648 * 13 4 3 15 15 C 1.31212 * 109.85745 * 0.45508 * 14 13 4 16 16 N 1.38580 * 126.47357 * 179.81996 * 15 14 13 17 17 C 1.46898 * 111.00268 * 106.22822 * 16 15 14 18 18 C 1.50704 * 109.46896 * 299.46435 * 17 16 15 19 19 H 1.07995 * 120.00451 * 4.97186 * 18 17 16 20 20 C 1.37884 * 119.99766 * 184.96581 * 18 17 16 21 21 N 1.31513 * 120.00112 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99841 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47154 * 60.00163 * 22 20 18 24 24 H 1.48501 * 109.47036 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46989 * 300.00085 * 22 20 18 26 26 C 1.46906 * 110.99849 * 342.27981 * 16 15 14 27 27 C 1.53002 * 109.47106 * 198.97126 * 26 16 15 28 28 O 1.42899 * 109.47131 * 65.18921 * 27 26 16 29 29 C 1.42895 * 114.00109 * 179.97438 * 28 27 26 30 30 H 1.08994 * 109.47073 * 307.22947 * 1 2 3 31 31 H 1.09007 * 109.46678 * 67.23091 * 1 2 3 32 32 H 1.08994 * 109.47056 * 187.22627 * 1 2 3 33 33 H 1.09002 * 109.47164 * 239.99880 * 2 1 3 34 34 H 1.09004 * 109.47319 * 120.00077 * 2 1 3 35 35 H 1.08996 * 110.90609 * 257.75545 * 7 5 4 36 36 H 1.09002 * 110.90680 * 21.35542 * 7 5 4 37 37 H 1.09005 * 110.61555 * 204.47199 * 8 7 5 38 38 H 1.09007 * 110.61730 * 81.47851 * 8 7 5 39 39 H 1.08990 * 109.47434 * 302.16267 * 12 10 9 40 40 H 1.09005 * 109.47174 * 62.17260 * 12 10 9 41 41 H 1.09008 * 109.47093 * 182.16106 * 12 10 9 42 42 H 1.09003 * 109.47162 * 59.45771 * 17 16 15 43 43 H 1.08990 * 109.47523 * 179.46220 * 17 16 15 44 44 H 0.97000 * 120.00303 * 180.02562 * 21 20 18 45 45 H 1.08999 * 109.47180 * 78.96598 * 26 16 15 46 46 H 1.09007 * 109.46509 * 318.96774 * 26 16 15 47 47 H 1.08999 * 109.47229 * 185.19131 * 27 26 16 48 48 H 1.08994 * 109.46836 * 305.19423 * 27 26 16 49 49 H 1.09004 * 109.46832 * 60.00202 * 29 28 27 50 50 H 1.09000 * 109.47780 * 180.02562 * 29 28 27 51 51 H 1.09007 * 109.47292 * 300.00798 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1919 2.1955 -1.0847 5 6 1.9139 1.8394 -2.5224 6 1 1.5018 0.8328 -2.5923 7 6 0.9483 2.8687 -3.1586 8 6 1.5550 3.0521 -4.5730 9 8 2.9785 2.9894 -4.3396 10 6 3.1988 1.9559 -3.3651 11 1 4.0396 2.2211 -2.7242 12 6 3.4808 0.6277 -4.0702 13 7 2.6412 3.3366 -0.6448 14 7 2.7569 3.3010 0.6348 15 6 2.3939 2.1222 1.0825 16 7 2.3872 1.7097 2.4055 17 6 1.0162 1.6391 2.9281 18 6 0.3800 3.0033 2.8554 19 1 0.9079 3.8211 2.3875 20 6 -0.8761 3.2074 3.3863 21 7 -1.5187 2.2117 3.9564 22 14 -1.6649 4.8983 3.2956 23 1 -1.8062 5.3029 1.8738 24 1 -3.0051 4.8541 3.9337 25 1 -0.8103 5.8820 4.0077 26 6 3.2222 2.5887 3.2352 27 6 3.5789 1.8717 4.5389 28 8 4.4003 0.7387 4.2500 29 6 4.7923 -0.0047 5.4057 30 1 -0.3633 0.6217 0.8182 31 1 -0.3633 0.3978 -0.9477 32 1 -0.3633 -1.0195 0.1293 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 -0.0635 2.4676 -3.2183 36 1 0.9609 3.8077 -2.6051 37 1 1.2762 4.0209 -4.9876 38 1 1.2385 2.2452 -5.2340 39 1 2.6443 0.3779 -4.7226 40 1 4.3906 0.7175 -4.6639 41 1 3.6088 -0.1586 -3.3261 42 1 0.4357 0.9353 2.3315 43 1 1.0394 1.3038 3.9649 44 1 -2.4025 2.3551 4.3295 45 1 2.6738 3.5031 3.4616 46 1 4.1360 2.8373 2.6954 47 1 4.1198 2.5553 5.1932 48 1 2.6655 1.5416 5.0335 49 1 3.9042 -0.3738 5.9188 50 1 5.4135 -0.8474 5.1022 51 1 5.3586 0.6402 6.0778 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592407723.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:30 Heat of formation + Delta-G solvation = -4.253659 kcal Electronic energy + Delta-G solvation = -31805.510370 eV Core-core repulsion = 27741.967889 eV Total energy + Delta-G solvation = -4063.542482 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.36125 -39.53882 -37.90325 -36.38267 -35.20710 -33.00148 -32.59006 -31.28908 -30.17070 -29.67603 -28.70851 -26.87417 -26.00071 -25.59717 -23.67912 -23.20294 -22.36194 -21.75170 -21.33945 -19.73172 -19.38477 -17.15744 -16.79960 -16.24220 -16.13193 -16.04779 -15.73016 -15.53241 -14.81762 -14.69148 -14.52078 -14.39405 -14.25806 -13.78280 -13.45038 -13.38409 -12.89842 -12.76925 -12.62389 -12.21846 -12.09748 -12.01710 -11.93841 -11.63866 -11.47625 -11.36809 -11.24494 -11.06663 -11.01370 -10.99782 -10.86419 -10.72509 -10.47017 -10.43698 -10.26253 -9.97376 -9.70368 -9.59069 -9.47737 -9.24289 -8.68706 -8.56560 -7.39590 -6.19324 -4.26733 2.41494 2.86458 3.25254 3.28423 3.35318 3.55744 3.87419 4.21787 4.33135 4.41800 4.58465 4.62522 4.73929 4.89511 5.03501 5.10105 5.14253 5.15717 5.25560 5.28511 5.38735 5.44606 5.44724 5.47888 5.55648 5.70384 5.70991 5.77721 5.78613 5.82720 5.84597 5.87660 5.94728 5.96256 5.99770 6.10134 6.11622 6.24216 6.42818 6.49904 6.63416 6.72304 6.89261 7.00066 7.27712 7.28246 7.48839 7.67826 7.77294 8.00420 8.16555 8.83226 9.41154 9.51044 10.86602 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.009396 B = 0.004545 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2979.325965 B = 6159.194129 C = 7847.412518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.112 3.888 3 N -0.472 5.472 4 C 0.153 3.847 5 C -0.019 4.019 6 H 0.094 0.906 7 C -0.143 4.143 8 C 0.048 3.952 9 O -0.365 6.365 10 C 0.087 3.913 11 H 0.099 0.901 12 C -0.170 4.170 13 N -0.277 5.277 14 N -0.335 5.335 15 C 0.415 3.585 16 N -0.459 5.459 17 C 0.186 3.814 18 C -0.554 4.554 19 H 0.069 0.931 20 C 0.071 3.929 21 N -0.891 5.891 22 Si 0.891 3.109 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.274 1.274 26 C 0.079 3.921 27 C 0.068 3.932 28 O -0.381 6.381 29 C 0.032 3.968 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.038 0.962 43 H 0.049 0.951 44 H 0.264 0.736 45 H 0.084 0.916 46 H 0.074 0.926 47 H 0.049 0.951 48 H 0.059 0.941 49 H 0.038 0.962 50 H 0.078 0.922 51 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.054 -7.575 -9.207 13.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.011 4.011 3 N -0.167 5.167 4 C -0.115 4.115 5 C -0.040 4.040 6 H 0.112 0.888 7 C -0.182 4.182 8 C -0.028 4.028 9 O -0.284 6.284 10 C 0.028 3.972 11 H 0.117 0.883 12 C -0.227 4.227 13 N -0.116 5.116 14 N -0.180 5.180 15 C 0.059 3.941 16 N -0.183 5.183 17 C 0.062 3.938 18 C -0.593 4.593 19 H 0.087 0.913 20 C -0.132 4.132 21 N -0.529 5.529 22 Si 0.718 3.282 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.199 1.199 26 C -0.049 4.049 27 C -0.008 4.008 28 O -0.300 6.300 29 C -0.065 4.065 30 H 0.106 0.894 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.119 0.881 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.056 0.944 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.102 0.898 46 H 0.092 0.908 47 H 0.067 0.933 48 H 0.077 0.923 49 H 0.057 0.943 50 H 0.096 0.904 51 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 6.794 -6.629 -9.315 13.299 hybrid contribution -1.786 0.022 0.627 1.893 sum 5.008 -6.606 -8.688 12.008 Atomic orbital electron populations 1.22302 0.93874 1.03368 1.03853 1.21728 0.95866 0.79470 1.04077 1.46049 1.51081 1.13440 1.06150 1.23865 1.07547 0.89662 0.90392 1.20788 0.96599 1.00320 0.86328 0.88751 1.23220 0.98445 1.00451 0.96087 1.23528 0.81418 1.01990 0.95900 1.88929 1.23042 1.55831 1.60571 1.22736 0.97209 0.88218 0.89058 0.88295 1.22302 1.02504 0.96780 1.01155 1.73803 1.16180 1.17680 1.03980 1.74651 1.26244 1.14454 1.02635 1.22500 0.96564 0.86394 0.88641 1.59232 1.15876 1.47765 0.95444 1.20132 0.79662 0.97384 0.96605 1.21780 1.02265 0.96419 1.38847 0.91258 1.24882 0.96935 0.96899 0.94509 1.69917 1.13844 1.31129 1.37980 0.86655 0.78364 0.84582 0.78567 1.20215 1.21223 1.19907 1.21939 0.96530 0.94357 0.92047 1.22645 0.93823 0.87291 0.97086 1.87963 1.69637 1.41794 1.30562 1.22652 0.98894 0.95747 0.89179 0.89395 0.92686 0.90955 0.90057 0.88122 0.90004 0.88862 0.88798 0.92360 0.92233 0.91590 0.91635 0.94398 0.93256 0.92622 0.89806 0.90790 0.93270 0.92286 0.94344 0.90386 0.94818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.57 10.00 37.16 0.37 -2.19 16 2 C 0.11 1.62 6.04 -4.04 -0.02 1.60 16 3 N -0.47 -8.70 2.81 -114.08 -0.32 -9.02 16 4 C 0.15 2.75 6.38 -154.03 -0.98 1.77 16 5 C -0.02 -0.26 3.08 -90.24 -0.28 -0.54 16 6 H 0.09 1.05 6.76 -51.93 -0.35 0.70 16 7 C -0.14 -1.83 6.70 -24.72 -0.17 -2.00 16 8 C 0.05 0.53 7.66 38.21 0.29 0.83 16 9 O -0.37 -5.09 11.19 -35.23 -0.39 -5.48 16 10 C 0.09 1.13 3.75 -26.16 -0.10 1.03 16 11 H 0.10 1.49 7.69 -51.93 -0.40 1.09 16 12 C -0.17 -1.67 9.30 37.16 0.35 -1.32 16 13 N -0.28 -5.97 11.93 32.99 0.39 -5.57 16 14 N -0.34 -7.78 10.88 30.31 0.33 -7.45 16 15 C 0.42 8.97 5.79 -318.89 -1.85 7.12 16 16 N -0.46 -9.77 4.59 -175.88 -0.81 -10.58 16 17 C 0.19 4.40 4.97 -4.97 -0.02 4.38 16 18 C -0.55 -14.64 7.47 -34.44 -0.26 -14.90 16 19 H 0.07 1.94 6.45 -52.49 -0.34 1.61 16 20 C 0.07 1.91 5.46 -17.82 -0.10 1.81 16 21 N -0.89 -24.50 13.29 55.43 0.74 -23.77 16 22 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 25 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 26 C 0.08 1.58 4.74 -3.82 -0.02 1.56 16 27 C 0.07 1.19 6.12 37.16 0.23 1.41 16 28 O -0.38 -6.54 10.65 -35.23 -0.38 -6.91 16 29 C 0.03 0.41 11.01 101.05 1.11 1.53 16 30 H 0.09 1.69 5.89 -51.93 -0.31 1.39 16 31 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.08 0.90 7.56 -51.93 -0.39 0.51 16 34 H 0.10 1.51 8.10 -51.93 -0.42 1.09 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.09 1.45 7.67 -51.93 -0.40 1.06 16 37 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.52 8.11 -51.92 -0.42 0.10 16 39 H 0.06 0.51 8.11 -51.93 -0.42 0.09 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 42 H 0.04 0.92 5.03 -51.93 -0.26 0.66 16 43 H 0.05 1.24 6.66 -51.93 -0.35 0.89 16 44 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.08 1.83 6.49 -51.93 -0.34 1.49 16 46 H 0.07 1.49 7.69 -51.93 -0.40 1.09 16 47 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.06 1.09 6.68 -51.93 -0.35 0.74 16 49 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 50 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 51 H 0.03 0.38 8.14 -51.92 -0.42 -0.04 16 LS Contribution 403.30 15.07 6.08 6.08 Total: -1.00 -31.79 403.30 -9.33 -41.11 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -8.50 Total: 3.05 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -1.44 Total: 2.10 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: 0.33 Total: -56.39 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: -0.77 Total: -12.39 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.79 -9.33 -41.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592407723.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.859 kcal (2) G-P(sol) polarization free energy of solvation -31.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds