Wall clock time and date at job start Tue Mar 31 2020 21:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47250 * 2 1 4 4 C 1.36734 * 127.13847 * 275.67468 * 3 2 1 5 5 C 1.50700 * 126.34583 * 0.02562 * 4 3 2 6 6 H 1.08996 * 110.43831 * 2.54668 * 5 4 3 7 7 C 1.54816 * 110.48871 * 125.23405 * 5 4 3 8 8 C 1.54996 * 102.09277 * 139.55532 * 7 5 4 9 9 O 1.44381 * 103.49207 * 322.97560 * 8 7 5 10 10 C 1.43745 * 106.97146 * 40.06347 * 9 8 7 11 11 H 1.09001 * 109.99829 * 213.99252 * 10 9 8 12 12 C 1.52996 * 109.87886 * 92.90972 * 10 9 8 13 13 N 1.30288 * 107.30770 * 179.97438 * 4 3 2 14 14 N 1.28533 * 110.05192 * 359.72648 * 13 4 3 15 15 C 1.31212 * 109.85745 * 0.45508 * 14 13 4 16 16 N 1.38580 * 126.47357 * 179.81996 * 15 14 13 17 17 C 1.46898 * 111.00268 * 106.22822 * 16 15 14 18 18 C 1.50704 * 109.46896 * 299.46435 * 17 16 15 19 19 H 1.07995 * 120.00451 * 4.97186 * 18 17 16 20 20 C 1.37884 * 119.99766 * 184.96581 * 18 17 16 21 21 N 1.31513 * 120.00112 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99841 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47154 * 60.00163 * 22 20 18 24 24 H 1.48501 * 109.47036 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46989 * 300.00085 * 22 20 18 26 26 C 1.46906 * 110.99849 * 342.27981 * 16 15 14 27 27 C 1.53002 * 109.47106 * 198.97126 * 26 16 15 28 28 O 1.42899 * 109.47131 * 65.18921 * 27 26 16 29 29 C 1.42895 * 114.00109 * 179.97438 * 28 27 26 30 30 H 1.08994 * 109.47073 * 307.22947 * 1 2 3 31 31 H 1.09007 * 109.46678 * 67.23091 * 1 2 3 32 32 H 1.08994 * 109.47056 * 187.22627 * 1 2 3 33 33 H 1.09002 * 109.47164 * 239.99880 * 2 1 3 34 34 H 1.09004 * 109.47319 * 120.00077 * 2 1 3 35 35 H 1.08996 * 110.90609 * 257.75545 * 7 5 4 36 36 H 1.09002 * 110.90680 * 21.35542 * 7 5 4 37 37 H 1.09005 * 110.61555 * 204.47199 * 8 7 5 38 38 H 1.09007 * 110.61730 * 81.47851 * 8 7 5 39 39 H 1.08990 * 109.47434 * 302.16267 * 12 10 9 40 40 H 1.09005 * 109.47174 * 62.17260 * 12 10 9 41 41 H 1.09008 * 109.47093 * 182.16106 * 12 10 9 42 42 H 1.09003 * 109.47162 * 59.45771 * 17 16 15 43 43 H 1.08990 * 109.47523 * 179.46220 * 17 16 15 44 44 H 0.97000 * 120.00303 * 180.02562 * 21 20 18 45 45 H 1.08999 * 109.47180 * 78.96598 * 26 16 15 46 46 H 1.09007 * 109.46509 * 318.96774 * 26 16 15 47 47 H 1.08999 * 109.47229 * 185.19131 * 27 26 16 48 48 H 1.08994 * 109.46836 * 305.19423 * 27 26 16 49 49 H 1.09004 * 109.46832 * 60.00202 * 29 28 27 50 50 H 1.09000 * 109.47780 * 180.02562 * 29 28 27 51 51 H 1.09007 * 109.47292 * 300.00798 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1919 2.1955 -1.0847 5 6 1.9139 1.8394 -2.5224 6 1 1.5018 0.8328 -2.5923 7 6 0.9483 2.8687 -3.1586 8 6 1.5550 3.0521 -4.5730 9 8 2.9785 2.9894 -4.3396 10 6 3.1988 1.9559 -3.3651 11 1 4.0396 2.2211 -2.7242 12 6 3.4808 0.6277 -4.0702 13 7 2.6412 3.3366 -0.6448 14 7 2.7569 3.3010 0.6348 15 6 2.3939 2.1222 1.0825 16 7 2.3872 1.7097 2.4055 17 6 1.0162 1.6391 2.9281 18 6 0.3800 3.0033 2.8554 19 1 0.9079 3.8211 2.3875 20 6 -0.8761 3.2074 3.3863 21 7 -1.5187 2.2117 3.9564 22 14 -1.6649 4.8983 3.2956 23 1 -1.8062 5.3029 1.8738 24 1 -3.0051 4.8541 3.9337 25 1 -0.8103 5.8820 4.0077 26 6 3.2222 2.5887 3.2352 27 6 3.5789 1.8717 4.5389 28 8 4.4003 0.7387 4.2500 29 6 4.7923 -0.0047 5.4057 30 1 -0.3633 0.6217 0.8182 31 1 -0.3633 0.3978 -0.9477 32 1 -0.3633 -1.0195 0.1293 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 -0.0635 2.4676 -3.2183 36 1 0.9609 3.8077 -2.6051 37 1 1.2762 4.0209 -4.9876 38 1 1.2385 2.2452 -5.2340 39 1 2.6443 0.3779 -4.7226 40 1 4.3906 0.7175 -4.6639 41 1 3.6088 -0.1586 -3.3261 42 1 0.4357 0.9353 2.3315 43 1 1.0394 1.3038 3.9649 44 1 -2.4025 2.3551 4.3295 45 1 2.6738 3.5031 3.4616 46 1 4.1360 2.8373 2.6954 47 1 4.1198 2.5553 5.1932 48 1 2.6655 1.5416 5.0335 49 1 3.9042 -0.3738 5.9188 50 1 5.4135 -0.8474 5.1022 51 1 5.3586 0.6402 6.0778 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592407723.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:29 Heat of formation + Delta-G solvation = -24.347437 kcal Electronic energy + Delta-G solvation = -31806.381702 eV Core-core repulsion = 27741.967889 eV Total energy + Delta-G solvation = -4064.413813 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.89132 -40.56575 -39.38123 -37.88605 -36.58453 -34.74820 -34.02241 -32.17004 -31.51808 -31.08384 -30.31613 -28.43131 -27.12940 -26.97353 -25.05308 -24.83857 -23.80183 -22.90556 -22.47983 -21.24585 -20.75666 -18.86367 -18.24975 -17.63636 -17.56654 -17.30887 -17.04879 -16.86303 -16.50096 -15.99541 -15.93489 -15.65051 -15.36736 -15.10704 -14.92601 -14.62965 -14.28043 -13.94984 -13.79006 -13.64769 -13.41196 -13.20078 -13.08445 -13.01498 -12.84560 -12.83029 -12.60809 -12.57581 -12.30681 -12.29570 -12.19318 -12.11132 -11.99148 -11.94210 -11.86747 -11.78433 -11.22234 -10.94974 -10.69334 -10.66877 -10.51349 -10.29897 -9.11078 -8.26251 -6.39276 0.91275 1.29405 1.30649 1.39452 1.45744 1.95752 2.31393 2.90674 2.94351 3.02540 3.03829 3.26140 3.58176 3.67295 3.81588 3.98891 4.08689 4.12471 4.13889 4.20640 4.27649 4.31655 4.32728 4.40657 4.45814 4.52608 4.59460 4.62570 4.64742 4.68248 4.71617 4.81797 4.86218 4.87320 4.92212 4.95885 5.01920 5.06588 5.11794 5.18056 5.19627 5.23840 5.30940 5.39789 5.67488 5.72803 5.87469 5.97172 6.01944 6.34852 6.50146 6.74683 7.30087 7.92630 8.77641 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.009396 B = 0.004545 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2979.325965 B = 6159.194129 C = 7847.412518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.104 3.896 3 N -0.471 5.471 4 C 0.175 3.825 5 C -0.020 4.020 6 H 0.131 0.869 7 C -0.145 4.145 8 C 0.051 3.949 9 O -0.390 6.390 10 C 0.089 3.911 11 H 0.067 0.933 12 C -0.162 4.162 13 N -0.321 5.321 14 N -0.371 5.371 15 C 0.392 3.608 16 N -0.450 5.450 17 C 0.204 3.796 18 C -0.557 4.557 19 H 0.047 0.953 20 C 0.034 3.966 21 N -0.910 5.910 22 Si 0.939 3.061 23 H -0.286 1.286 24 H -0.273 1.273 25 H -0.273 1.273 26 C 0.082 3.918 27 C 0.080 3.920 28 O -0.403 6.403 29 C 0.026 3.974 30 H 0.035 0.965 31 H 0.069 0.931 32 H 0.102 0.898 33 H 0.129 0.871 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.055 0.945 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.077 0.923 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.267 0.733 45 H 0.058 0.942 46 H 0.068 0.932 47 H 0.075 0.925 48 H 0.045 0.955 49 H 0.040 0.960 50 H 0.098 0.902 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.725 -9.690 -10.954 15.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.017 4.017 3 N -0.165 5.165 4 C -0.094 4.094 5 C -0.041 4.041 6 H 0.148 0.852 7 C -0.183 4.183 8 C -0.025 4.025 9 O -0.310 6.310 10 C 0.030 3.970 11 H 0.085 0.915 12 C -0.219 4.219 13 N -0.160 5.160 14 N -0.215 5.215 15 C 0.035 3.965 16 N -0.174 5.174 17 C 0.079 3.921 18 C -0.596 4.596 19 H 0.065 0.935 20 C -0.167 4.167 21 N -0.549 5.549 22 Si 0.765 3.235 23 H -0.213 1.213 24 H -0.198 1.198 25 H -0.198 1.198 26 C -0.046 4.046 27 C 0.003 3.997 28 O -0.322 6.322 29 C -0.070 4.070 30 H 0.054 0.946 31 H 0.088 0.912 32 H 0.121 0.879 33 H 0.147 0.853 34 H 0.112 0.888 35 H 0.124 0.876 36 H 0.074 0.926 37 H 0.120 0.880 38 H 0.111 0.889 39 H 0.099 0.901 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.087 0.913 47 H 0.093 0.907 48 H 0.063 0.937 49 H 0.059 0.941 50 H 0.116 0.884 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.471 -8.753 -11.059 15.518 hybrid contribution -1.642 0.674 1.100 2.088 sum 4.829 -8.080 -9.959 13.703 Atomic orbital electron populations 1.22216 0.93693 1.04178 1.02394 1.22106 0.95907 0.77569 1.06115 1.46347 1.50310 1.14680 1.05206 1.24768 1.04167 0.88361 0.92087 1.21145 0.97484 1.02279 0.83191 0.85157 1.23221 0.99773 0.98573 0.96760 1.23710 0.79708 1.03906 0.95129 1.88903 1.24856 1.56604 1.60608 1.22690 0.95665 0.89757 0.88934 0.91463 1.22246 1.03459 0.94705 1.01488 1.73720 1.18813 1.19991 1.03493 1.74522 1.27293 1.15870 1.03784 1.22600 0.97853 0.86881 0.89216 1.59256 1.14467 1.47972 0.95667 1.19794 0.80907 0.95784 0.95623 1.21839 1.02386 0.97009 1.38343 0.93460 1.25424 0.97373 0.99463 0.94481 1.69972 1.14160 1.32228 1.38547 0.85912 0.78210 0.81508 0.77850 1.21253 1.19768 1.19827 1.21881 0.95663 0.93838 0.93195 1.22448 0.93852 0.87962 0.95429 1.87911 1.69449 1.41900 1.32955 1.22891 0.99500 0.96260 0.88324 0.94592 0.91241 0.87936 0.85346 0.88769 0.87622 0.92632 0.88026 0.88910 0.90113 0.91451 0.90362 0.94770 0.94800 0.92360 0.92364 0.91300 0.90739 0.93658 0.94143 0.88379 0.92997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.55 10.00 71.98 0.72 -3.83 16 2 C 0.10 2.81 6.04 86.38 0.52 3.33 16 3 N -0.47 -17.26 2.81 -514.85 -1.45 -18.70 16 4 C 0.17 6.28 6.38 137.64 0.88 7.16 16 5 C -0.02 -0.50 3.08 -10.55 -0.03 -0.53 16 6 H 0.13 2.29 6.76 -2.39 -0.02 2.27 16 7 C -0.14 -3.43 6.70 31.90 0.21 -3.22 16 8 C 0.05 1.00 7.66 72.66 0.56 1.55 16 9 O -0.39 -10.30 11.19 -148.98 -1.67 -11.96 16 10 C 0.09 2.15 3.75 30.97 0.12 2.26 16 11 H 0.07 2.04 7.69 -2.39 -0.02 2.02 16 12 C -0.16 -2.58 9.30 71.98 0.67 -1.91 16 13 N -0.32 -14.42 11.93 -49.54 -0.59 -15.01 16 14 N -0.37 -18.08 10.88 -58.01 -0.63 -18.71 16 15 C 0.39 17.52 5.79 260.12 1.51 19.03 16 16 N -0.45 -19.86 4.59 -710.35 -3.26 -23.13 16 17 C 0.20 10.02 4.97 85.56 0.43 10.44 16 18 C -0.56 -30.53 7.47 25.60 0.19 -30.34 16 19 H 0.05 2.79 6.45 -2.91 -0.02 2.77 16 20 C 0.03 1.85 5.46 84.66 0.46 2.32 16 21 N -0.91 -50.71 13.29 21.45 0.28 -50.42 16 22 Si 0.94 44.80 29.54 68.60 2.03 46.82 16 23 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 24 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 25 H -0.27 -12.90 7.11 99.48 0.71 -12.20 16 26 C 0.08 3.44 4.74 86.30 0.41 3.85 16 27 C 0.08 2.82 6.12 71.98 0.44 3.26 16 28 O -0.40 -13.68 10.65 -148.98 -1.59 -15.26 16 29 C 0.03 0.64 11.01 113.37 1.25 1.89 16 30 H 0.04 1.37 5.89 -2.39 -0.01 1.36 16 31 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.13 2.27 7.56 -2.39 -0.02 2.25 16 34 H 0.09 2.70 8.10 -2.38 -0.02 2.68 16 35 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.05 1.75 7.67 -2.39 -0.02 1.73 16 37 H 0.10 1.79 8.14 -2.38 -0.02 1.77 16 38 H 0.09 1.21 8.11 -2.38 -0.02 1.19 16 39 H 0.08 0.97 8.11 -2.39 -0.02 0.95 16 40 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 41 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 42 H 0.03 1.72 5.03 -2.39 -0.01 1.71 16 43 H 0.03 1.77 6.66 -2.39 -0.02 1.75 16 44 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 45 H 0.06 2.71 6.49 -2.39 -0.02 2.70 16 46 H 0.07 2.92 7.69 -2.38 -0.02 2.90 16 47 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 48 H 0.05 1.71 6.68 -2.39 -0.02 1.70 16 49 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 51 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 Total: -1.00 -73.55 403.30 2.37 -71.18 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.92 Total: 19.92 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: 8.33 Total: 15.27 kcal Atomic # 7 Polarization: -120.32 SS G_CDS: -5.65 Total: -125.97 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -3.25 Total: -27.23 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -73.55 2.37 -71.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592407723.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.835 kcal (2) G-P(sol) polarization free energy of solvation -73.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds