Wall clock time and date at job start Tue Mar 31 2020 21:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.47198 * 2 1 4 4 C 1.46766 * 124.35058 * 89.99677 * 3 2 1 5 5 C 1.54481 * 105.47448 * 197.01804 * 4 3 2 6 6 H 1.08999 * 110.96843 * 92.74393 * 5 4 3 7 7 C 1.52996 * 110.97023 * 216.46678 * 5 4 3 8 8 N 1.46501 * 109.47240 * 185.00268 * 7 5 4 9 9 C 1.34776 * 120.00050 * 180.02562 * 8 7 5 10 10 O 1.21589 * 119.99802 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00067 * 180.02562 * 9 8 7 12 12 C 1.46499 * 119.99908 * 180.02562 * 11 9 8 13 13 C 1.53045 * 109.46020 * 275.06520 * 12 11 9 14 14 C 1.53192 * 109.31365 * 178.61368 * 13 12 11 15 15 N 1.46925 * 108.77285 * 54.63919 * 14 13 12 16 16 C 1.36936 * 120.63359 * 126.36782 * 15 14 13 17 17 H 1.07997 * 120.00277 * 207.69751 * 16 15 14 18 18 C 1.38814 * 119.99871 * 27.69748 * 16 15 14 19 19 N 1.31616 * 119.99987 * 17.35059 * 18 16 15 20 20 Si 1.86793 * 120.00105 * 197.35049 * 18 16 15 21 21 H 1.48500 * 109.47075 * 89.99897 * 20 18 16 22 22 H 1.48499 * 109.47501 * 210.00182 * 20 18 16 23 23 H 1.48507 * 109.47237 * 330.00003 * 20 18 16 24 24 C 1.46928 * 118.73882 * 306.38910 * 15 14 13 25 25 C 1.53045 * 109.45871 * 154.99987 * 12 11 9 26 26 C 1.54625 * 101.76478 * 334.58524 * 5 4 3 27 27 C 1.34418 * 124.35169 * 269.70557 * 3 2 1 28 28 O 1.21287 * 124.94200 * 359.56834 * 27 3 2 29 29 H 1.08999 * 109.47301 * 299.99842 * 1 2 3 30 30 H 1.09006 * 109.46899 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47062 * 60.00257 * 1 2 3 32 32 H 1.08995 * 109.47322 * 120.00175 * 2 1 3 33 33 H 1.08999 * 109.47301 * 240.00158 * 2 1 3 34 34 H 1.08999 * 110.24366 * 316.02451 * 4 3 2 35 35 H 1.09007 * 110.24335 * 77.92950 * 4 3 2 36 36 H 1.09006 * 109.47126 * 305.00157 * 7 5 4 37 37 H 1.08998 * 109.47058 * 64.99727 * 7 5 4 38 38 H 0.96988 * 119.99880 * 0.02562 * 8 7 5 39 39 H 0.97003 * 120.00045 * 359.97438 * 11 9 8 40 40 H 1.08994 * 109.46316 * 35.02148 * 12 11 9 41 41 H 1.08999 * 109.49803 * 298.57047 * 13 12 11 42 42 H 1.08998 * 109.49775 * 58.66692 * 13 12 11 43 43 H 1.08998 * 109.58721 * 294.85209 * 14 13 12 44 44 H 1.08997 * 109.58670 * 174.42234 * 14 13 12 45 45 H 0.97003 * 120.00170 * 179.97438 * 19 18 16 46 46 H 1.09005 * 109.58678 * 293.82329 * 24 15 14 47 47 H 1.08997 * 109.59193 * 173.40021 * 24 15 14 48 48 H 1.08995 * 109.49498 * 301.33499 * 25 12 11 49 49 H 1.09001 * 109.49828 * 61.43177 * 25 12 11 50 50 H 1.09004 * 110.48030 * 143.47361 * 26 5 4 51 51 H 1.09002 * 110.48777 * 266.11620 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2943 2.1619 1.2117 5 6 2.3529 3.6346 0.7487 6 1 1.3782 4.1129 0.8454 7 6 3.4196 4.4103 1.5239 8 7 3.3664 5.8247 1.1458 9 6 4.2204 6.7045 1.7053 10 8 5.0348 6.3243 2.5243 11 7 4.1711 8.0057 1.3578 12 6 5.0998 8.9619 1.9656 13 6 4.5309 9.4467 3.3011 14 6 5.5204 10.4197 3.9499 15 7 5.8202 11.4957 2.9955 16 6 5.6665 12.8086 3.3533 17 1 5.4460 13.5511 2.6007 18 6 5.7940 13.1850 4.6833 19 7 6.3860 12.3810 5.5409 20 14 5.1255 14.8326 5.2559 21 1 3.7166 14.6693 5.6956 22 1 5.9435 15.3314 6.3905 23 1 5.1851 15.8070 4.1368 24 6 6.2877 11.1365 1.6497 25 6 5.2896 10.1554 1.0266 26 6 2.7504 3.4821 -0.7378 27 6 2.2766 2.0944 -1.1097 28 8 2.1462 1.6856 -2.2442 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.4932 2.0265 1.9383 35 1 3.2493 1.8627 1.6438 36 1 3.2341 4.3130 2.5937 37 1 4.4048 4.0079 1.2880 38 1 2.7165 6.1279 0.4928 39 1 3.5211 8.3090 0.7047 40 1 6.0610 8.4768 2.1353 41 1 3.5815 9.9538 3.1294 42 1 4.3741 8.5935 3.9609 43 1 6.4388 9.8910 4.2049 44 1 5.0781 10.8436 4.8514 45 1 6.4755 12.6442 6.4703 46 1 7.2687 10.6662 1.7171 47 1 6.3517 12.0333 1.0335 48 1 5.6728 9.8065 0.0677 49 1 4.3330 10.6559 0.8764 50 1 2.2490 4.2352 -1.3458 51 1 3.8318 3.5555 -0.8530 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593336155.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:12 Heat of formation + Delta-G solvation = -47.334105 kcal Electronic energy + Delta-G solvation = -29269.930591 eV Core-core repulsion = 25204.520001 eV Total energy + Delta-G solvation = -4065.410590 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.00706 -39.90483 -37.67342 -37.04243 -35.57189 -34.34696 -33.60500 -32.06746 -30.47386 -29.92858 -29.31861 -28.46700 -26.03614 -24.73711 -23.64798 -22.23741 -22.03975 -21.43508 -20.63383 -19.81493 -19.39185 -18.09373 -17.49248 -16.99324 -16.66519 -16.06973 -15.69033 -15.46841 -14.97142 -14.65758 -14.46864 -14.24725 -14.15739 -14.14222 -13.76265 -13.70070 -13.48224 -13.07437 -12.99980 -12.81335 -12.69766 -12.45097 -12.38013 -12.24441 -11.82093 -11.59289 -11.48688 -11.45683 -11.11241 -10.91296 -10.73696 -10.37444 -10.21726 -10.16793 -10.10837 -9.98626 -9.74335 -9.54826 -9.23292 -9.20698 -8.61648 -8.38344 -6.68022 -5.77435 -3.20120 2.17858 2.45150 2.78236 3.36308 3.38451 3.45190 3.46523 3.80445 3.87116 4.12627 4.34457 4.46010 4.50210 4.55543 4.67417 4.80219 4.87721 4.93819 5.04525 5.19091 5.21111 5.27604 5.31575 5.37894 5.41044 5.47409 5.48460 5.62405 5.66600 5.66859 5.85436 6.06716 6.10526 6.25528 6.35095 6.37635 6.46553 6.60024 6.64355 6.67168 6.77374 6.90263 6.96077 7.09782 7.40720 7.70219 7.75036 7.80755 8.12362 8.46013 8.74671 9.22095 9.85520 10.42084 11.31026 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.031599 B = 0.001729 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.904857 B =16194.098225 C =16532.198998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.121 3.879 3 N -0.621 5.621 4 C 0.110 3.890 5 C -0.112 4.112 6 H 0.099 0.901 7 C 0.152 3.848 8 N -0.753 5.753 9 C 0.702 3.298 10 O -0.588 6.588 11 N -0.739 5.739 12 C 0.169 3.831 13 C -0.146 4.146 14 C 0.173 3.827 15 N -0.592 5.592 16 C -0.254 4.254 17 H 0.066 0.934 18 C 0.002 3.998 19 N -0.901 5.901 20 Si 0.902 3.098 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.148 3.852 25 C -0.138 4.138 26 C -0.152 4.152 27 C 0.518 3.482 28 O -0.533 6.533 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.394 0.606 39 H 0.390 0.610 40 H 0.081 0.919 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.021 0.979 44 H 0.089 0.911 45 H 0.254 0.746 46 H 0.021 0.979 47 H 0.058 0.942 48 H 0.055 0.945 49 H 0.062 0.938 50 H 0.104 0.896 51 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.796 -22.339 -10.594 27.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.001 4.001 3 N -0.356 5.356 4 C -0.013 4.013 5 C -0.132 4.132 6 H 0.118 0.882 7 C 0.027 3.973 8 N -0.410 5.410 9 C 0.402 3.598 10 O -0.465 6.465 11 N -0.392 5.392 12 C 0.065 3.935 13 C -0.187 4.187 14 C 0.047 3.953 15 N -0.315 5.315 16 C -0.384 4.384 17 H 0.084 0.916 18 C -0.197 4.197 19 N -0.545 5.545 20 Si 0.732 3.268 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.205 1.205 24 C 0.021 3.979 25 C -0.179 4.179 26 C -0.192 4.192 27 C 0.306 3.694 28 O -0.409 6.409 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.227 0.773 39 H 0.223 0.777 40 H 0.099 0.901 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.039 0.961 44 H 0.107 0.893 45 H 0.064 0.936 46 H 0.038 0.962 47 H 0.076 0.924 48 H 0.073 0.927 49 H 0.081 0.919 50 H 0.122 0.878 51 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -11.053 -22.943 -10.232 27.446 hybrid contribution -1.073 1.047 -0.137 1.506 sum -12.126 -21.896 -10.370 27.093 Atomic orbital electron populations 1.22160 0.95651 1.02473 1.02514 1.21355 0.94442 0.81006 1.03287 1.48351 1.65927 1.14046 1.07241 1.22036 1.02448 0.89426 0.87414 1.22398 1.00840 0.95397 0.94526 0.88224 1.21061 0.97833 0.79446 0.99009 1.45053 1.39759 1.07861 1.48309 1.15978 0.81451 0.81096 0.81311 1.90944 1.40344 1.78456 1.36795 1.45527 1.40202 1.06290 1.47220 1.20912 0.92130 0.87351 0.93123 1.22575 1.00734 0.99499 0.95876 1.20771 0.94326 0.86947 0.93296 1.44110 1.75819 1.02684 1.08909 1.19189 1.42015 0.84503 0.92673 0.91615 1.25050 0.99180 0.97767 0.97656 1.70040 1.43508 1.37336 1.03623 0.86291 0.78581 0.83669 0.78212 1.21502 1.21781 1.20455 1.20842 0.93486 0.95521 0.88042 1.22344 1.01727 0.96380 0.97399 1.22496 1.04307 0.95664 0.96733 1.20943 0.76265 0.87892 0.84335 1.90736 1.53410 1.75587 1.21180 0.92323 0.91320 0.92248 0.90186 0.89964 0.89778 0.90240 0.90851 0.91095 0.77256 0.77723 0.90082 0.92840 0.92837 0.96123 0.89273 0.93589 0.96158 0.92352 0.92665 0.91926 0.87797 0.87271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.85 10.24 37.16 0.38 -0.47 16 2 C 0.12 0.67 6.66 -4.04 -0.03 0.64 16 3 N -0.62 -4.13 2.93 -172.41 -0.51 -4.63 16 4 C 0.11 0.48 6.91 -3.12 -0.02 0.46 16 5 C -0.11 -0.52 3.16 -88.99 -0.28 -0.80 16 6 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 7 C 0.15 1.09 4.98 -4.04 -0.02 1.07 16 8 N -0.75 -6.63 5.50 -65.23 -0.36 -6.98 16 9 C 0.70 9.77 8.53 -86.92 -0.74 9.03 16 10 O -0.59 -10.97 16.01 5.29 0.08 -10.88 16 11 N -0.74 -9.81 5.08 -58.63 -0.30 -10.10 16 12 C 0.17 2.87 2.41 -67.88 -0.16 2.71 16 13 C -0.15 -2.89 5.65 -26.61 -0.15 -3.04 16 14 C 0.17 4.19 5.31 -3.71 -0.02 4.17 16 15 N -0.59 -14.66 2.99 -172.32 -0.52 -15.18 16 16 C -0.25 -6.90 9.59 -15.06 -0.14 -7.04 16 17 H 0.07 1.74 7.89 -52.49 -0.41 1.33 16 18 C 0.00 0.06 4.91 -17.43 -0.09 -0.02 16 19 N -0.90 -26.24 11.19 55.49 0.62 -25.62 16 20 Si 0.90 21.56 29.59 -169.99 -5.03 16.53 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 C 0.15 3.01 6.52 -3.71 -0.02 2.99 16 25 C -0.14 -2.24 5.55 -26.61 -0.15 -2.39 16 26 C -0.15 -0.92 6.36 -26.74 -0.17 -1.09 16 27 C 0.52 4.71 8.02 -10.86 -0.09 4.62 16 28 O -0.53 -7.11 17.59 5.55 0.10 -7.01 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 0.55 7.92 -51.93 -0.41 0.14 16 34 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 35 H 0.08 0.31 7.89 -51.93 -0.41 -0.10 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.58 7.93 -51.93 -0.41 0.17 16 38 H 0.39 2.34 8.49 -40.82 -0.35 2.00 16 39 H 0.39 3.94 8.62 -40.82 -0.35 3.59 16 40 H 0.08 1.58 7.58 -51.93 -0.39 1.19 16 41 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.09 2.42 6.04 -51.93 -0.31 2.10 16 45 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 48 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 50 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 51 H 0.11 0.68 7.75 -51.93 -0.40 0.28 16 LS Contribution 407.31 15.07 6.14 6.14 Total: -1.00 -35.59 407.31 -10.39 -45.98 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -8.92 Total: 0.92 kcal Atomic # 6 Polarization: 12.54 SS G_CDS: -1.70 Total: 10.84 kcal Atomic # 7 Polarization: -61.46 SS G_CDS: -1.06 Total: -62.52 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: 0.18 Total: -17.90 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.59 -10.39 -45.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593336155.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.357 kcal (2) G-P(sol) polarization free energy of solvation -35.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds