Wall clock time and date at job start Tue Mar 31 2020 21:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.47198 * 2 1 4 4 C 1.46766 * 124.35058 * 89.99677 * 3 2 1 5 5 C 1.54481 * 105.47448 * 197.01804 * 4 3 2 6 6 H 1.08999 * 110.96843 * 92.74393 * 5 4 3 7 7 C 1.52996 * 110.97023 * 216.46678 * 5 4 3 8 8 N 1.46501 * 109.47240 * 185.00268 * 7 5 4 9 9 C 1.34776 * 120.00050 * 180.02562 * 8 7 5 10 10 O 1.21589 * 119.99802 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00067 * 180.02562 * 9 8 7 12 12 C 1.46499 * 119.99908 * 180.02562 * 11 9 8 13 13 C 1.53045 * 109.46020 * 275.06520 * 12 11 9 14 14 C 1.53192 * 109.31365 * 178.61368 * 13 12 11 15 15 N 1.46925 * 108.77285 * 54.63919 * 14 13 12 16 16 C 1.36936 * 120.63359 * 126.36782 * 15 14 13 17 17 H 1.07997 * 120.00277 * 207.69751 * 16 15 14 18 18 C 1.38814 * 119.99871 * 27.69748 * 16 15 14 19 19 N 1.31616 * 119.99987 * 17.35059 * 18 16 15 20 20 Si 1.86793 * 120.00105 * 197.35049 * 18 16 15 21 21 H 1.48500 * 109.47075 * 89.99897 * 20 18 16 22 22 H 1.48499 * 109.47501 * 210.00182 * 20 18 16 23 23 H 1.48507 * 109.47237 * 330.00003 * 20 18 16 24 24 C 1.46928 * 118.73882 * 306.38910 * 15 14 13 25 25 C 1.53045 * 109.45871 * 154.99987 * 12 11 9 26 26 C 1.54625 * 101.76478 * 334.58524 * 5 4 3 27 27 C 1.34418 * 124.35169 * 269.70557 * 3 2 1 28 28 O 1.21287 * 124.94200 * 359.56834 * 27 3 2 29 29 H 1.08999 * 109.47301 * 299.99842 * 1 2 3 30 30 H 1.09006 * 109.46899 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47062 * 60.00257 * 1 2 3 32 32 H 1.08995 * 109.47322 * 120.00175 * 2 1 3 33 33 H 1.08999 * 109.47301 * 240.00158 * 2 1 3 34 34 H 1.08999 * 110.24366 * 316.02451 * 4 3 2 35 35 H 1.09007 * 110.24335 * 77.92950 * 4 3 2 36 36 H 1.09006 * 109.47126 * 305.00157 * 7 5 4 37 37 H 1.08998 * 109.47058 * 64.99727 * 7 5 4 38 38 H 0.96988 * 119.99880 * 0.02562 * 8 7 5 39 39 H 0.97003 * 120.00045 * 359.97438 * 11 9 8 40 40 H 1.08994 * 109.46316 * 35.02148 * 12 11 9 41 41 H 1.08999 * 109.49803 * 298.57047 * 13 12 11 42 42 H 1.08998 * 109.49775 * 58.66692 * 13 12 11 43 43 H 1.08998 * 109.58721 * 294.85209 * 14 13 12 44 44 H 1.08997 * 109.58670 * 174.42234 * 14 13 12 45 45 H 0.97003 * 120.00170 * 179.97438 * 19 18 16 46 46 H 1.09005 * 109.58678 * 293.82329 * 24 15 14 47 47 H 1.08997 * 109.59193 * 173.40021 * 24 15 14 48 48 H 1.08995 * 109.49498 * 301.33499 * 25 12 11 49 49 H 1.09001 * 109.49828 * 61.43177 * 25 12 11 50 50 H 1.09004 * 110.48030 * 143.47361 * 26 5 4 51 51 H 1.09002 * 110.48777 * 266.11620 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2943 2.1619 1.2117 5 6 2.3529 3.6346 0.7487 6 1 1.3782 4.1129 0.8454 7 6 3.4196 4.4103 1.5239 8 7 3.3664 5.8247 1.1458 9 6 4.2204 6.7045 1.7053 10 8 5.0348 6.3243 2.5243 11 7 4.1711 8.0057 1.3578 12 6 5.0998 8.9619 1.9656 13 6 4.5309 9.4467 3.3011 14 6 5.5204 10.4197 3.9499 15 7 5.8202 11.4957 2.9955 16 6 5.6665 12.8086 3.3533 17 1 5.4460 13.5511 2.6007 18 6 5.7940 13.1850 4.6833 19 7 6.3860 12.3810 5.5409 20 14 5.1255 14.8326 5.2559 21 1 3.7166 14.6693 5.6956 22 1 5.9435 15.3314 6.3905 23 1 5.1851 15.8070 4.1368 24 6 6.2877 11.1365 1.6497 25 6 5.2896 10.1554 1.0266 26 6 2.7504 3.4821 -0.7378 27 6 2.2766 2.0944 -1.1097 28 8 2.1462 1.6856 -2.2442 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.4932 2.0265 1.9383 35 1 3.2493 1.8627 1.6438 36 1 3.2341 4.3130 2.5937 37 1 4.4048 4.0079 1.2880 38 1 2.7165 6.1279 0.4928 39 1 3.5211 8.3090 0.7047 40 1 6.0610 8.4768 2.1353 41 1 3.5815 9.9538 3.1294 42 1 4.3741 8.5935 3.9609 43 1 6.4388 9.8910 4.2049 44 1 5.0781 10.8436 4.8514 45 1 6.4755 12.6442 6.4703 46 1 7.2687 10.6662 1.7171 47 1 6.3517 12.0333 1.0335 48 1 5.6728 9.8065 0.0677 49 1 4.3330 10.6559 0.8764 50 1 2.2490 4.2352 -1.3458 51 1 3.8318 3.5555 -0.8530 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593336155.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:11 Heat of formation + Delta-G solvation = -73.010012 kcal Electronic energy + Delta-G solvation = -29271.043982 eV Core-core repulsion = 25204.520001 eV Total energy + Delta-G solvation = -4066.523981 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.62382 -41.00497 -39.11341 -37.87998 -36.35859 -35.84178 -34.40284 -33.70110 -31.75483 -31.33643 -30.53036 -29.03321 -27.13983 -26.13900 -24.16233 -23.86895 -23.60031 -21.99009 -21.73420 -21.03479 -20.37507 -19.23650 -18.62954 -18.06240 -17.58797 -17.06113 -16.73279 -16.40284 -16.29998 -15.84146 -15.52624 -15.32069 -15.16254 -15.11505 -14.87757 -14.71410 -14.64339 -14.33830 -14.20681 -13.96872 -13.55955 -13.32941 -13.17478 -13.10804 -12.98408 -12.76165 -12.59899 -12.58498 -12.29032 -12.08223 -12.03837 -12.00194 -11.93068 -11.82490 -11.49540 -11.38786 -11.14183 -10.86865 -10.56174 -10.23538 -9.75395 -9.65754 -8.69371 -7.85171 -5.30971 1.49198 1.50405 1.51824 1.59486 1.71924 2.07829 2.26277 2.53488 3.25118 3.28075 3.32218 3.53647 3.70347 3.75666 3.93268 3.99861 4.13372 4.14977 4.25921 4.32929 4.39412 4.48556 4.52263 4.59486 4.64680 4.70763 4.71644 4.74093 4.84679 4.85494 4.89354 4.93752 4.97619 5.09689 5.13139 5.16924 5.18239 5.26211 5.36146 5.49500 5.54984 5.61189 5.66445 5.67792 5.73465 6.09018 6.12493 6.40781 7.11733 7.15702 7.22208 7.70578 7.87138 8.39526 9.21744 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.031599 B = 0.001729 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.904857 B =16194.098225 C =16532.198998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.114 3.886 3 N -0.617 5.617 4 C 0.108 3.892 5 C -0.093 4.093 6 H 0.119 0.881 7 C 0.152 3.848 8 N -0.731 5.731 9 C 0.698 3.302 10 O -0.638 6.638 11 N -0.726 5.726 12 C 0.181 3.819 13 C -0.129 4.129 14 C 0.181 3.819 15 N -0.609 5.609 16 C -0.260 4.260 17 H 0.074 0.926 18 C -0.055 4.055 19 N -0.938 5.938 20 Si 0.969 3.031 21 H -0.286 1.286 22 H -0.298 1.298 23 H -0.265 1.265 24 C 0.140 3.860 25 C -0.121 4.121 26 C -0.147 4.147 27 C 0.506 3.494 28 O -0.586 6.586 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.035 0.965 32 H 0.106 0.894 33 H 0.064 0.936 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.413 0.587 39 H 0.411 0.589 40 H 0.054 0.946 41 H 0.060 0.940 42 H 0.045 0.955 43 H -0.012 1.012 44 H 0.054 0.946 45 H 0.249 0.751 46 H 0.011 0.989 47 H 0.067 0.933 48 H 0.090 0.910 49 H 0.075 0.925 50 H 0.115 0.885 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.833 -22.448 -11.767 28.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.007 4.007 3 N -0.350 5.350 4 C -0.015 4.015 5 C -0.112 4.112 6 H 0.137 0.863 7 C 0.028 3.972 8 N -0.388 5.388 9 C 0.398 3.602 10 O -0.520 6.520 11 N -0.381 5.381 12 C 0.076 3.924 13 C -0.170 4.170 14 C 0.055 3.945 15 N -0.333 5.333 16 C -0.391 4.391 17 H 0.091 0.909 18 C -0.250 4.250 19 N -0.585 5.585 20 Si 0.797 3.203 21 H -0.213 1.213 22 H -0.225 1.225 23 H -0.190 1.190 24 C 0.014 3.986 25 C -0.160 4.160 26 C -0.186 4.186 27 C 0.295 3.705 28 O -0.467 6.467 29 H 0.088 0.912 30 H 0.100 0.900 31 H 0.054 0.946 32 H 0.124 0.876 33 H 0.082 0.918 34 H 0.125 0.875 35 H 0.105 0.895 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.249 0.751 39 H 0.247 0.753 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.063 0.937 43 H 0.006 0.994 44 H 0.073 0.927 45 H 0.058 0.942 46 H 0.029 0.971 47 H 0.085 0.915 48 H 0.109 0.891 49 H 0.094 0.906 50 H 0.133 0.867 51 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -13.155 -23.073 -11.457 28.925 hybrid contribution -0.397 0.991 0.224 1.090 sum -13.552 -22.082 -11.233 28.239 Atomic orbital electron populations 1.22102 0.95052 1.03180 1.01803 1.21501 0.94929 0.80642 1.03663 1.48518 1.64620 1.14428 1.07434 1.22225 1.03822 0.88709 0.86748 1.22255 1.00655 0.95396 0.92885 0.86296 1.21131 0.98358 0.78494 0.99268 1.44852 1.38576 1.07790 1.47557 1.16168 0.81547 0.81515 0.80980 1.90924 1.42611 1.79288 1.39150 1.45086 1.40026 1.05664 1.47313 1.20466 0.91509 0.88239 0.92215 1.22308 0.99576 0.97922 0.97145 1.20489 0.93747 0.87443 0.92866 1.44353 1.76393 1.02086 1.10419 1.19584 1.40820 0.85696 0.92953 0.90853 1.25851 0.99914 1.01264 0.97947 1.70212 1.45365 1.39332 1.03550 0.85243 0.77512 0.79925 0.77626 1.21260 1.22539 1.18955 1.21056 0.94282 0.97030 0.86203 1.22127 1.01171 0.94707 0.97996 1.22489 1.04244 0.94150 0.97760 1.21478 0.75828 0.89142 0.84049 1.90702 1.55924 1.76828 1.23282 0.91232 0.90014 0.94572 0.87629 0.91780 0.87508 0.89456 0.91134 0.91978 0.75077 0.75269 0.92747 0.92122 0.93653 0.99362 0.92714 0.94215 0.97091 0.91466 0.89126 0.90608 0.86684 0.87376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 10.24 71.98 0.74 -0.67 16 2 C 0.11 1.12 6.66 86.38 0.58 1.69 16 3 N -0.62 -7.20 2.93 -817.98 -2.40 -9.60 16 4 C 0.11 0.62 6.91 86.83 0.60 1.22 16 5 C -0.09 -0.57 3.16 -9.74 -0.03 -0.60 16 6 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 7 C 0.15 1.80 4.98 86.38 0.43 2.23 16 8 N -0.73 -10.70 5.50 -478.54 -2.63 -13.33 16 9 C 0.70 18.04 8.53 179.06 1.53 19.57 16 10 O -0.64 -23.50 16.01 -4.00 -0.06 -23.56 16 11 N -0.73 -17.30 5.08 -457.68 -2.33 -19.62 16 12 C 0.18 5.93 2.41 45.02 0.11 6.04 16 13 C -0.13 -5.08 5.65 30.67 0.17 -4.90 16 14 C 0.18 9.08 5.31 86.36 0.46 9.54 16 15 N -0.61 -30.34 2.99 -699.10 -2.09 -32.43 16 16 C -0.26 -14.13 9.59 84.03 0.81 -13.32 16 17 H 0.07 3.80 7.89 -2.91 -0.02 3.78 16 18 C -0.05 -3.06 4.91 84.86 0.42 -2.64 16 19 N -0.94 -56.54 11.19 21.65 0.24 -56.29 16 20 Si 0.97 44.68 29.59 68.60 2.03 46.71 16 21 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 22 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 23 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 24 C 0.14 5.55 6.52 86.36 0.56 6.11 16 25 C -0.12 -3.56 5.55 30.67 0.17 -3.39 16 26 C -0.15 -1.47 6.36 30.59 0.19 -1.28 16 27 C 0.51 8.82 8.02 87.90 0.71 9.52 16 28 O -0.59 -16.03 17.59 -3.05 -0.05 -16.09 16 29 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.08 0.48 8.14 -2.38 -0.02 0.46 16 31 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.06 0.87 7.92 -2.39 -0.02 0.85 16 34 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 35 H 0.09 0.43 7.89 -2.38 -0.02 0.42 16 36 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.06 0.90 7.93 -2.39 -0.02 0.88 16 38 H 0.41 3.23 8.49 -92.72 -0.79 2.44 16 39 H 0.41 6.57 8.62 -92.71 -0.80 5.78 16 40 H 0.05 2.12 7.58 -2.39 -0.02 2.10 16 41 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 43 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 44 H 0.05 3.10 6.04 -2.39 -0.01 3.09 16 45 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 46 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 47 H 0.07 2.51 7.93 -2.39 -0.02 2.50 16 48 H 0.09 2.11 8.14 -2.39 -0.02 2.10 16 49 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 50 H 0.11 0.92 8.14 -2.38 -0.02 0.90 16 51 H 0.11 1.15 7.75 -2.39 -0.02 1.13 16 Total: -1.00 -81.89 407.31 -0.52 -82.41 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -0.66 Total: 12.69 kcal Atomic # 6 Polarization: 21.69 SS G_CDS: 7.43 Total: 29.12 kcal Atomic # 7 Polarization: -122.07 SS G_CDS: -9.21 Total: -131.28 kcal Atomic # 8 Polarization: -39.53 SS G_CDS: -0.12 Total: -39.65 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -81.89 -0.52 -82.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593336155.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.396 kcal (2) G-P(sol) polarization free energy of solvation -81.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds